Wall clock time and date at job start Tue Mar 31 2020 19:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38925 * 119.69774 * 2 1 4 4 C 1.37681 * 120.64268 * 179.72410 * 3 2 1 5 5 C 1.39231 * 119.80865 * 0.27841 * 4 3 2 6 6 N 1.37508 * 133.13157 * 180.02562 * 5 4 3 7 7 H 0.96993 * 125.60860 * 359.95864 * 6 5 4 8 8 C 1.38345 * 108.78888 * 180.02562 * 6 5 4 9 9 C 1.46872 * 125.46209 * 179.97438 * 8 6 5 10 10 O 1.21663 * 120.00314 * 180.02562 * 9 8 6 11 11 N 1.34780 * 119.99684 * 0.02562 * 9 8 6 12 12 C 1.46496 * 119.99924 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47472 * 179.97438 * 12 11 9 14 14 O 1.21300 * 119.99408 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00384 * 179.97438 * 13 12 11 16 16 C 1.37102 * 120.00017 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99913 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99931 * 180.02562 * 16 15 13 19 19 N 1.31416 * 120.00119 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00121 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46962 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47374 * 119.99593 * 20 18 16 23 23 H 1.48504 * 109.46934 * 239.99896 * 20 18 16 24 24 C 1.36029 * 109.08010 * 359.97438 * 8 6 5 25 25 Cl 1.73599 * 126.15114 * 180.02562 * 24 8 6 26 26 C 1.40825 * 119.42953 * 359.97438 * 5 4 3 27 27 C 1.36458 * 119.68945 * 180.30793 * 2 1 3 28 28 H 1.09001 * 109.47165 * 89.99604 * 1 2 3 29 29 H 1.08996 * 109.47638 * 209.99784 * 1 2 3 30 30 H 1.08998 * 109.46609 * 329.99733 * 1 2 3 31 31 H 1.08002 * 119.68189 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.09700 * 180.30156 * 4 3 2 33 33 H 0.97000 * 119.99847 * 359.97438 * 11 9 8 34 34 H 1.08994 * 109.47344 * 300.00034 * 12 11 9 35 35 H 1.09004 * 109.47382 * 59.99947 * 12 11 9 36 36 H 0.96995 * 120.00247 * 0.02562 * 15 13 12 37 37 H 0.96998 * 120.00132 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.08626 * 359.96944 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2068 0.0000 4 6 3.5719 1.2295 0.0057 5 6 4.2839 0.0330 0.0057 6 7 5.6270 -0.2618 0.0109 7 1 6.3476 0.3874 0.0153 8 6 5.7815 -1.6366 0.0073 9 6 7.0654 -2.3498 0.0104 10 8 7.0856 -3.5662 0.0063 11 7 8.2212 -1.6566 0.0178 12 6 9.5019 -2.3679 0.0204 13 6 10.6310 -1.3697 0.0283 14 8 10.3895 -0.1810 0.0310 15 7 11.9089 -1.7978 0.0323 16 6 12.9360 -0.8897 0.0389 17 1 12.7211 0.1686 0.0413 18 6 14.2536 -1.3310 0.0425 19 7 14.5151 -2.6189 0.0401 20 14 15.6530 -0.0938 0.0523 21 1 15.0965 1.2830 0.0543 22 1 16.4828 -0.2945 1.2674 23 1 16.4923 -0.2863 -1.1576 24 6 4.5536 -2.2220 0.0004 25 17 4.2325 -3.9280 -0.0056 26 6 3.5837 -1.1888 0.0003 27 6 2.1829 -1.1854 -0.0064 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6452 2.1362 0.0004 32 1 4.0980 2.1727 0.0106 33 1 8.2051 -0.6867 0.0208 34 1 9.5664 -2.9969 0.9081 35 1 9.5738 -2.9901 -0.8717 36 1 12.1020 -2.7483 0.0297 37 1 15.4349 -2.9270 0.0430 38 1 1.6392 -2.1186 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117321521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:04 Heat of formation + Delta-G solvation = -47.948453 kcal Electronic energy + Delta-G solvation = -24720.459349 eV Core-core repulsion = 20780.969390 eV Total energy + Delta-G solvation = -3939.489959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.76713 -40.92010 -39.89081 -38.29212 -37.51868 -36.32468 -35.45965 -33.41756 -33.19557 -32.46740 -30.44279 -29.35066 -27.43094 -26.47482 -24.63788 -22.87282 -21.98671 -21.50677 -21.22395 -20.19800 -19.67672 -18.38952 -17.44649 -17.24821 -17.01182 -16.60690 -16.26757 -16.11581 -16.00669 -15.62502 -15.52525 -15.22039 -14.92381 -14.82018 -14.37221 -14.20391 -14.03528 -13.63560 -13.57673 -13.06972 -12.96419 -12.93762 -12.69088 -12.47063 -12.18151 -12.12456 -12.11502 -11.88073 -11.60627 -11.25651 -10.70814 -10.61465 -10.39830 -10.12346 -9.26372 -8.80388 -8.53657 -6.03959 -0.46020 0.51652 0.86949 0.99088 1.33198 1.41758 1.55035 1.69391 1.85754 1.95845 2.02874 2.27645 2.78023 3.04443 3.13631 3.43748 3.56434 3.94814 4.06993 4.13604 4.16998 4.31651 4.37494 4.39149 4.41705 4.55999 4.83158 4.96710 5.00165 5.05396 5.14232 5.29639 5.36280 5.37873 5.43684 5.71310 5.88483 5.99602 6.16720 6.31397 6.44294 6.85103 7.00641 7.40421 7.89919 8.63229 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.002251 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.686962 B =12436.482321 C =13652.717114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C -0.075 4.075 4 C -0.130 4.130 5 C 0.110 3.890 6 N -0.559 5.559 7 H 0.435 0.565 8 C 0.021 3.979 9 C 0.579 3.421 10 O -0.537 6.537 11 N -0.700 5.700 12 C 0.122 3.878 13 C 0.432 3.568 14 O -0.625 6.625 15 N -0.557 5.557 16 C -0.336 4.336 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.915 5.915 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.048 4.048 25 Cl -0.024 7.024 26 C -0.128 4.128 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.410 0.590 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.840 5.532 -0.094 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.094 4.094 4 C -0.150 4.150 5 C 0.000 4.000 6 N -0.166 5.166 7 H 0.277 0.723 8 C -0.092 4.092 9 C 0.366 3.634 10 O -0.414 6.414 11 N -0.354 5.354 12 C -0.006 4.006 13 C 0.219 3.781 14 O -0.513 6.513 15 N -0.192 5.192 16 C -0.465 4.465 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.555 5.555 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.085 4.085 25 Cl 0.005 6.995 26 C -0.132 4.132 27 C -0.093 4.093 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.248 0.752 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.600 5.230 -0.090 26.129 hybrid contribution 1.669 0.149 -0.003 1.676 sum -23.931 5.378 -0.093 24.528 Atomic orbital electron populations 1.20805 0.88788 1.03800 1.03153 1.19783 0.97793 0.92172 1.01359 1.21266 0.92561 0.98894 0.96686 1.20470 0.94410 0.94913 1.05252 1.18549 0.82350 0.95795 1.03273 1.41851 1.07163 1.04684 1.62859 0.72330 1.19564 0.93280 0.83547 1.12761 1.17170 0.82297 0.86724 0.77242 1.90877 1.86881 1.12977 1.50686 1.45489 1.04368 1.11314 1.74209 1.20864 0.81214 0.93523 1.04952 1.20337 0.84461 0.89489 0.83796 1.90464 1.84122 1.18451 1.58254 1.41837 1.04290 1.09964 1.63117 1.19769 0.85543 0.90885 1.50347 0.89456 1.26143 1.00636 0.98647 0.95765 1.69683 1.22211 1.14417 1.49139 0.84808 0.77095 0.77781 0.78279 1.19357 1.19688 1.19695 1.20177 0.92129 0.86359 1.09855 1.98348 1.95294 1.09145 1.96757 1.18051 0.94470 0.90491 1.10214 1.20422 0.90362 0.99433 0.99049 0.90400 0.91233 0.89927 0.82018 0.83022 0.75176 0.88094 0.88105 0.76626 0.91040 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.99 71.24 0.71 -0.18 16 2 C -0.11 -1.55 5.84 -20.12 -0.12 -1.67 16 3 C -0.07 -0.92 9.66 22.30 0.22 -0.70 16 4 C -0.13 -1.96 10.08 22.38 0.23 -1.73 16 5 C 0.11 2.34 7.25 39.12 0.28 2.62 16 6 N -0.56 -12.43 6.08 -177.09 -1.08 -13.50 16 7 H 0.44 7.85 8.12 -92.71 -0.75 7.10 16 8 C 0.02 0.58 6.97 39.86 0.28 0.86 16 9 C 0.58 18.70 7.79 86.50 0.67 19.38 16 10 O -0.54 -19.95 15.39 -4.23 -0.07 -20.02 16 11 N -0.70 -22.34 5.52 -470.65 -2.60 -24.94 16 12 C 0.12 4.26 6.15 85.63 0.53 4.79 16 13 C 0.43 19.22 7.85 87.66 0.69 19.90 16 14 O -0.62 -30.89 15.24 -3.09 -0.05 -30.93 16 15 N -0.56 -27.22 5.29 -306.99 -1.62 -28.85 16 16 C -0.34 -18.12 9.68 84.04 0.81 -17.30 16 17 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 18 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 19 N -0.91 -47.89 13.05 21.66 0.28 -47.61 16 20 Si 1.00 41.08 29.55 68.60 2.03 43.10 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 C -0.05 -1.35 6.72 22.61 0.15 -1.20 16 25 Cl -0.02 -0.68 27.67 -2.72 -0.08 -0.76 16 26 C -0.13 -3.04 6.16 -21.34 -0.13 -3.17 16 27 C -0.07 -1.40 9.68 22.30 0.22 -1.19 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 30 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 31 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.41 12.45 6.49 -92.71 -0.60 11.85 16 34 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 37 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -67.04 351.17 0.90 -66.14 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.92 Total: 37.07 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 5.00 Total: 20.30 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -5.02 Total: -114.90 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.11 Total: -50.95 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -67.04 0.90 -66.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117321521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.190 kcal (2) G-P(sol) polarization free energy of solvation -67.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds