Wall clock time and date at job start Tue Mar 31 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99717 * 2 1 4 4 H 1.48495 * 109.47552 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46790 * 120.00639 * 3 2 1 6 6 H 1.48503 * 109.47444 * 240.00430 * 3 2 1 7 7 C 1.37873 * 119.99733 * 180.28636 * 2 1 3 8 8 H 1.08008 * 119.99668 * 200.29503 * 7 2 1 9 9 C 1.50697 * 120.00515 * 20.28767 * 7 2 1 10 10 H 1.08995 * 109.47158 * 305.45515 * 9 7 2 11 11 N 1.46496 * 109.47242 * 185.44889 * 9 7 2 12 12 C 1.34782 * 120.00219 * 155.00154 * 11 9 7 13 13 O 1.21364 * 119.99349 * 0.02562 * 12 11 9 14 14 C 1.49352 * 120.00518 * 180.02562 * 12 11 9 15 15 O 1.21370 * 119.99781 * 0.02562 * 14 12 11 16 16 N 1.34771 * 120.00152 * 179.97438 * 14 12 11 17 17 C 1.39335 * 119.99945 * 184.88136 * 16 14 12 18 18 C 1.39071 * 119.67063 * 185.55842 * 17 16 14 19 19 C 1.38349 * 119.12149 * 179.97438 * 18 17 16 20 20 C 1.39015 * 118.47995 * 0.02562 * 19 18 17 21 21 F 1.35099 * 120.36584 * 179.97438 * 20 19 18 22 22 C 1.38308 * 119.26656 * 359.97438 * 20 19 18 23 23 N 1.31931 * 120.81552 * 359.72768 * 22 20 19 24 24 C 1.53003 * 109.46775 * 65.45572 * 9 7 2 25 25 F 1.39908 * 109.47138 * 54.59503 * 24 9 7 26 26 F 1.39897 * 109.47212 * 174.59703 * 24 9 7 27 27 F 1.39904 * 109.47108 * 294.59832 * 24 9 7 28 28 H 0.96998 * 120.00219 * 175.47290 * 1 2 3 29 29 H 0.97008 * 120.00396 * 335.00892 * 11 9 7 30 30 H 0.96999 * 120.00416 * 4.89131 * 16 14 12 31 31 H 1.07997 * 120.43629 * 359.97438 * 18 17 16 32 32 H 1.08005 * 120.76053 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.59511 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1027 1.6966 -1.2125 7 6 2.0044 -1.1940 -0.0060 8 1 3.0342 -1.2247 0.3183 9 6 1.3211 -2.4564 -0.4648 10 1 0.4048 -2.6020 0.1072 11 7 2.2141 -3.5987 -0.2557 12 6 1.7014 -4.8358 -0.1024 13 8 0.4999 -5.0032 -0.1380 14 6 2.6117 -6.0003 0.1114 15 8 3.8132 -5.8327 0.1475 16 7 2.0989 -7.2372 0.2652 17 6 2.9391 -8.3073 0.5656 18 6 2.4221 -9.5976 0.6086 19 6 3.2667 -10.6518 0.9075 20 6 4.6069 -10.3778 1.1552 21 9 5.4651 -11.3782 1.4513 22 6 5.0519 -9.0696 1.0952 23 7 4.2226 -8.0864 0.8016 24 6 0.9811 -2.3405 -1.9520 25 9 2.1397 -2.0312 -2.6726 26 9 0.4594 -3.5561 -2.4072 27 9 0.0332 -1.3281 -2.1362 28 1 -0.4850 -0.8374 -0.0663 29 1 3.1745 -3.4649 -0.2275 30 1 1.1450 -7.3824 0.1666 31 1 1.3751 -9.7742 0.4112 32 1 2.8933 -11.6645 0.9476 33 1 6.0920 -8.8508 1.2862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120974566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:08 Heat of formation + Delta-G solvation = -211.474372 kcal Electronic energy + Delta-G solvation = -28636.689566 eV Core-core repulsion = 23584.082380 eV Total energy + Delta-G solvation = -5052.607185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.068 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.20635 -48.92504 -46.47262 -46.37330 -41.23742 -39.86468 -38.21131 -35.66431 -34.82977 -32.89795 -32.79510 -30.15194 -28.69300 -25.45811 -24.60304 -24.41392 -23.01703 -21.62574 -20.32165 -19.25129 -18.26453 -17.87256 -17.56487 -17.40626 -17.13291 -17.01725 -16.42060 -16.19805 -16.04175 -15.65852 -14.94604 -14.60841 -14.23754 -14.11369 -13.93164 -13.86570 -13.56944 -13.40652 -13.22403 -13.05112 -12.93194 -12.89657 -12.72967 -12.59262 -12.43583 -11.63206 -11.44444 -11.21218 -10.99038 -10.86777 -10.35879 -10.24704 -10.03486 -9.62262 -9.28797 -8.77510 -8.55660 -8.54683 -6.85456 -4.63702 0.46369 0.73242 1.60683 2.16219 3.15761 3.27670 3.34468 3.42857 3.50698 3.52500 3.74861 4.00231 4.12105 4.23983 4.32983 4.43974 4.58581 4.76207 4.80120 5.10732 5.28534 5.34237 5.41970 5.47805 5.53209 5.84718 6.26492 6.36737 6.57413 6.66412 7.07127 7.37986 7.72292 7.88538 7.98049 8.24682 8.33610 9.06622 10.51309 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.002792 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.411902 B =10024.694910 C =10565.934167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.041 3.959 3 Si 1.074 2.926 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.639 4.639 8 H 0.078 0.922 9 C 0.232 3.768 10 H 0.085 0.915 11 N -0.668 5.668 12 C 0.503 3.497 13 O -0.517 6.517 14 C 0.504 3.496 15 O -0.447 6.447 16 N -0.638 5.638 17 C 0.357 3.643 18 C -0.175 4.175 19 C -0.078 4.078 20 C 0.011 3.989 21 F -0.133 7.133 22 C 0.114 3.886 23 N -0.453 5.453 24 C 0.415 3.585 25 F -0.191 7.191 26 F -0.207 7.207 27 F -0.174 7.174 28 H 0.278 0.722 29 H 0.415 0.585 30 H 0.432 0.568 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.715 -17.620 1.376 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.172 4.172 3 Si 0.899 3.101 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.675 4.675 8 H 0.096 0.904 9 C 0.126 3.874 10 H 0.102 0.898 11 N -0.318 5.318 12 C 0.282 3.718 13 O -0.393 6.393 14 C 0.285 3.715 15 O -0.313 6.313 16 N -0.287 5.287 17 C 0.125 3.875 18 C -0.198 4.198 19 C -0.105 4.105 20 C -0.012 4.012 21 F -0.111 7.111 22 C -0.046 4.046 23 N -0.167 5.167 24 C 0.359 3.641 25 F -0.172 7.172 26 F -0.189 7.189 27 F -0.155 7.155 28 H 0.090 0.910 29 H 0.252 0.748 30 H 0.271 0.729 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.784 -14.997 1.358 15.800 hybrid contribution -0.129 -2.814 -0.407 2.847 sum 4.655 -17.812 0.951 18.435 Atomic orbital electron populations 1.70772 1.07122 1.32397 1.38026 1.26052 0.95939 1.03092 0.92081 0.83471 0.75141 0.74243 0.77249 1.20295 1.20848 1.20551 1.21691 1.01742 0.91067 1.53006 0.90400 1.19944 0.94541 0.86385 0.86493 0.89760 1.45761 1.12309 1.05299 1.68470 1.19821 0.88171 0.84453 0.79388 1.90770 1.14459 1.84762 1.49359 1.20642 0.88995 0.83913 0.77957 1.90860 1.14426 1.84002 1.42017 1.43261 1.11905 1.05680 1.67875 1.18505 0.88552 0.86330 0.94067 1.21429 1.02105 0.90317 1.05942 1.21412 0.91388 1.00789 0.96907 1.18722 0.88760 0.86617 1.07094 1.91514 1.69190 1.59344 1.91096 1.22849 1.00495 0.86051 0.95226 1.67716 1.01908 1.34106 1.12951 1.23020 0.73977 0.72545 0.94579 1.93054 1.50143 1.93061 1.80973 1.93085 1.87543 1.46646 1.91645 1.93160 1.65385 1.60855 1.96144 0.90967 0.74809 0.72880 0.83187 0.83025 0.81073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.43 12.44 55.43 0.69 -22.74 16 2 C 0.04 1.06 4.74 -17.82 -0.08 0.98 16 3 Si 1.07 23.05 29.95 -169.99 -5.09 17.96 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.64 -16.03 8.21 -34.44 -0.28 -16.32 16 8 H 0.08 1.89 7.80 -52.48 -0.41 1.48 16 9 C 0.23 5.47 1.92 -69.08 -0.13 5.33 16 10 H 0.08 2.14 6.62 -51.93 -0.34 1.79 16 11 N -0.67 -13.50 5.02 -55.40 -0.28 -13.78 16 12 C 0.50 9.37 7.30 -11.63 -0.08 9.29 16 13 O -0.52 -10.36 15.10 5.48 0.08 -10.28 16 14 C 0.50 8.16 7.84 -11.63 -0.09 8.07 16 15 O -0.45 -8.05 14.77 5.48 0.08 -7.97 16 16 N -0.64 -8.04 5.38 -11.85 -0.06 -8.10 16 17 C 0.36 4.22 7.41 -154.76 -1.15 3.08 16 18 C -0.17 -1.41 9.94 -39.23 -0.39 -1.80 16 19 C -0.08 -0.58 10.15 -39.25 -0.40 -0.98 16 20 C 0.01 0.10 7.34 -39.27 -0.29 -0.19 16 21 F -0.13 -1.23 17.28 2.25 0.04 -1.19 16 22 C 0.11 1.20 11.16 -17.48 -0.20 1.00 16 23 N -0.45 -6.12 7.92 -12.32 -0.10 -6.22 16 24 C 0.41 9.89 2.82 37.16 0.10 9.99 16 25 F -0.19 -4.48 16.87 2.25 0.04 -4.44 16 26 F -0.21 -4.74 15.54 2.25 0.03 -4.70 16 27 F -0.17 -4.42 14.10 2.25 0.03 -4.39 16 28 H 0.28 7.69 5.99 -40.82 -0.24 7.45 16 29 H 0.42 7.89 8.00 -40.82 -0.33 7.56 16 30 H 0.43 4.37 8.18 -40.82 -0.33 4.03 16 31 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.15 0.70 8.06 -52.48 -0.42 0.27 16 33 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -30.60 315.27 -4.49 -35.10 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -1.72 Total: 7.56 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: -2.99 Total: 18.46 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.25 Total: -50.84 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.16 Total: -18.24 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 0.14 Total: -14.73 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.09 Total: 17.96 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.60 -4.49 -35.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120974566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.378 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds