Wall clock time and date at job start Tue Mar 31 2020 18:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99717 * 2 1 4 4 H 1.48495 * 109.47552 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46790 * 120.00639 * 3 2 1 6 6 H 1.48503 * 109.47444 * 240.00430 * 3 2 1 7 7 C 1.37873 * 119.99733 * 180.28636 * 2 1 3 8 8 H 1.08008 * 119.99668 * 200.29503 * 7 2 1 9 9 C 1.50697 * 120.00515 * 20.28767 * 7 2 1 10 10 H 1.08995 * 109.47158 * 305.45515 * 9 7 2 11 11 N 1.46496 * 109.47242 * 185.44889 * 9 7 2 12 12 C 1.34782 * 120.00219 * 155.00154 * 11 9 7 13 13 O 1.21364 * 119.99349 * 0.02562 * 12 11 9 14 14 C 1.49352 * 120.00518 * 180.02562 * 12 11 9 15 15 O 1.21370 * 119.99781 * 0.02562 * 14 12 11 16 16 N 1.34771 * 120.00152 * 179.97438 * 14 12 11 17 17 C 1.39335 * 119.99945 * 184.88136 * 16 14 12 18 18 C 1.39071 * 119.67063 * 185.55842 * 17 16 14 19 19 C 1.38349 * 119.12149 * 179.97438 * 18 17 16 20 20 C 1.39015 * 118.47995 * 0.02562 * 19 18 17 21 21 F 1.35099 * 120.36584 * 179.97438 * 20 19 18 22 22 C 1.38308 * 119.26656 * 359.97438 * 20 19 18 23 23 N 1.31931 * 120.81552 * 359.72768 * 22 20 19 24 24 C 1.53003 * 109.46775 * 65.45572 * 9 7 2 25 25 F 1.39908 * 109.47138 * 54.59503 * 24 9 7 26 26 F 1.39897 * 109.47212 * 174.59703 * 24 9 7 27 27 F 1.39904 * 109.47108 * 294.59832 * 24 9 7 28 28 H 0.96998 * 120.00219 * 175.47290 * 1 2 3 29 29 H 0.97008 * 120.00396 * 335.00892 * 11 9 7 30 30 H 0.96999 * 120.00416 * 4.89131 * 16 14 12 31 31 H 1.07997 * 120.43629 * 359.97438 * 18 17 16 32 32 H 1.08005 * 120.76053 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.59511 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1027 1.6966 -1.2125 7 6 2.0044 -1.1940 -0.0060 8 1 3.0342 -1.2247 0.3183 9 6 1.3211 -2.4564 -0.4648 10 1 0.4048 -2.6020 0.1072 11 7 2.2141 -3.5987 -0.2557 12 6 1.7014 -4.8358 -0.1024 13 8 0.4999 -5.0032 -0.1380 14 6 2.6117 -6.0003 0.1114 15 8 3.8132 -5.8327 0.1475 16 7 2.0989 -7.2372 0.2652 17 6 2.9391 -8.3073 0.5656 18 6 2.4221 -9.5976 0.6086 19 6 3.2667 -10.6518 0.9075 20 6 4.6069 -10.3778 1.1552 21 9 5.4651 -11.3782 1.4513 22 6 5.0519 -9.0696 1.0952 23 7 4.2226 -8.0864 0.8016 24 6 0.9811 -2.3405 -1.9520 25 9 2.1397 -2.0312 -2.6726 26 9 0.4594 -3.5561 -2.4072 27 9 0.0332 -1.3281 -2.1362 28 1 -0.4850 -0.8374 -0.0663 29 1 3.1745 -3.4649 -0.2275 30 1 1.1450 -7.3824 0.1666 31 1 1.3751 -9.7742 0.4112 32 1 2.8933 -11.6645 0.9476 33 1 6.0920 -8.8508 1.2862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120974566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:07 Heat of formation + Delta-G solvation = -232.371602 kcal Electronic energy + Delta-G solvation = -28637.595738 eV Core-core repulsion = 23584.082380 eV Total energy + Delta-G solvation = -5053.513357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.068 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.86336 -49.94151 -48.39539 -48.33214 -42.32544 -41.03555 -39.54387 -37.19549 -36.15013 -34.63215 -33.60908 -31.08449 -30.42985 -26.69778 -26.57149 -25.24515 -24.19359 -23.18830 -21.70332 -20.61473 -19.62127 -19.28936 -19.08464 -19.00376 -18.58699 -18.27248 -17.95313 -17.44558 -17.11539 -16.72637 -16.22086 -15.72522 -15.59530 -15.43868 -15.32558 -15.25000 -14.90275 -14.86452 -14.82822 -14.67957 -14.54339 -14.46977 -14.40404 -14.36130 -13.69240 -13.39780 -13.11376 -12.90071 -12.56948 -11.97727 -11.91827 -11.47441 -11.17886 -11.04497 -10.52977 -10.49015 -10.37413 -9.39951 -8.88671 -6.67282 -0.42434 0.04608 0.35670 0.93407 1.56693 1.63208 1.84500 1.85343 2.10052 2.25565 2.47039 2.60252 2.85825 2.97854 3.06670 3.34166 3.41764 3.49525 3.65146 3.71716 3.79124 3.96480 4.45171 4.46177 4.72917 4.82008 4.92342 4.96771 5.19789 5.48156 5.66263 5.93908 6.11157 6.28445 6.44331 6.70169 6.90163 7.10498 8.47550 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.002792 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.411902 B =10024.694910 C =10565.934167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.000 4.000 3 Si 1.114 2.886 4 H -0.282 1.282 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.646 4.646 8 H 0.084 0.916 9 C 0.238 3.762 10 H 0.063 0.937 11 N -0.671 5.671 12 C 0.503 3.497 13 O -0.532 6.532 14 C 0.514 3.486 15 O -0.470 6.470 16 N -0.623 5.623 17 C 0.325 3.675 18 C -0.152 4.152 19 C -0.069 4.069 20 C 0.017 3.983 21 F -0.132 7.132 22 C 0.096 3.904 23 N -0.494 5.494 24 C 0.416 3.584 25 F -0.188 7.188 26 F -0.201 7.201 27 F -0.184 7.184 28 H 0.266 0.734 29 H 0.421 0.579 30 H 0.442 0.558 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -19.556 1.550 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.207 4.207 3 Si 0.933 3.067 4 H -0.207 1.207 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.681 4.681 8 H 0.102 0.898 9 C 0.130 3.870 10 H 0.081 0.919 11 N -0.323 5.323 12 C 0.283 3.717 13 O -0.409 6.409 14 C 0.293 3.707 15 O -0.339 6.339 16 N -0.273 5.273 17 C 0.095 3.905 18 C -0.175 4.175 19 C -0.095 4.095 20 C -0.005 4.005 21 F -0.111 7.111 22 C -0.063 4.063 23 N -0.208 5.208 24 C 0.360 3.640 25 F -0.169 7.169 26 F -0.183 7.183 27 F -0.166 7.166 28 H 0.077 0.923 29 H 0.258 0.742 30 H 0.284 0.716 31 H 0.205 0.795 32 H 0.207 0.793 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.272 -17.013 1.546 17.878 hybrid contribution -0.270 -2.421 -0.445 2.477 sum 5.001 -19.434 1.101 20.098 Atomic orbital electron populations 1.70878 1.08048 1.31665 1.40419 1.27339 0.95967 1.06301 0.91130 0.82978 0.74426 0.70780 0.78469 1.20745 1.18622 1.19482 1.21955 1.01991 0.91642 1.52541 0.89816 1.19596 0.94143 0.87302 0.85912 0.91948 1.45644 1.12155 1.05256 1.69196 1.20299 0.88393 0.84709 0.78258 1.90752 1.15341 1.85090 1.49707 1.20026 0.88037 0.84263 0.78327 1.90856 1.14905 1.84383 1.43787 1.43044 1.12637 1.04699 1.66933 1.18790 0.88396 0.87122 0.96204 1.21772 1.03845 0.88432 1.03440 1.21836 0.90262 1.02327 0.95085 1.18821 0.89558 0.86033 1.06137 1.91521 1.69431 1.59155 1.91003 1.22997 1.00802 0.86475 0.95983 1.67555 1.03192 1.35940 1.14139 1.22942 0.73851 0.72473 0.94746 1.93053 1.49919 1.93065 1.80904 1.93090 1.87473 1.46165 1.91582 1.93139 1.65845 1.61406 1.96214 0.92296 0.74164 0.71576 0.79550 0.79305 0.80196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.96 12.44 21.45 0.27 -48.69 16 2 C 0.00 -0.01 4.74 84.65 0.40 0.39 16 3 Si 1.11 45.74 29.95 68.60 2.05 47.79 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.65 -32.44 8.21 25.60 0.21 -32.23 16 8 H 0.08 4.03 7.80 -2.91 -0.02 4.01 16 9 C 0.24 11.33 1.92 44.25 0.09 11.42 16 10 H 0.06 3.27 6.62 -2.39 -0.02 3.26 16 11 N -0.67 -27.37 5.02 -447.53 -2.25 -29.62 16 12 C 0.50 18.81 7.30 87.24 0.64 19.45 16 13 O -0.53 -21.34 15.10 -3.29 -0.05 -21.39 16 14 C 0.51 16.51 7.84 87.24 0.68 17.19 16 15 O -0.47 -17.05 14.77 -3.31 -0.05 -17.10 16 16 N -0.62 -14.97 5.38 -309.76 -1.67 -16.64 16 17 C 0.32 7.16 7.41 132.95 0.98 8.15 16 18 C -0.15 -1.93 9.94 22.50 0.22 -1.71 16 19 C -0.07 -0.76 10.15 22.48 0.23 -0.53 16 20 C 0.02 0.28 7.34 22.47 0.16 0.44 16 21 F -0.13 -2.15 17.28 44.97 0.78 -1.37 16 22 C 0.10 1.94 11.16 84.69 0.95 2.89 16 23 N -0.49 -13.05 7.92 -192.89 -1.53 -14.58 16 24 C 0.42 19.95 2.82 71.98 0.20 20.16 16 25 F -0.19 -8.78 16.87 44.97 0.76 -8.02 16 26 F -0.20 -9.20 15.54 44.97 0.70 -8.50 16 27 F -0.18 -9.51 14.10 44.97 0.63 -8.88 16 28 H 0.27 15.13 5.99 -92.71 -0.56 14.57 16 29 H 0.42 16.11 8.00 -92.70 -0.74 15.37 16 30 H 0.44 8.23 8.18 -92.71 -0.76 7.47 16 31 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -66.49 315.27 4.38 -62.11 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.04 Total: 19.28 kcal Atomic # 6 Polarization: 40.84 SS G_CDS: 4.77 Total: 45.61 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -5.17 Total: -109.52 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.10 Total: -38.49 kcal Atomic # 9 Polarization: -29.64 SS G_CDS: 2.87 Total: -26.77 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.05 Total: 47.79 kcal Total: -66.49 4.38 -62.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120974566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.263 kcal (2) G-P(sol) polarization free energy of solvation -66.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds