Wall clock time and date at job start Tue Mar 31 2020 18:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86794 * 120.00370 * 2 1 4 4 H 1.48499 * 109.47025 * 270.00288 * 3 2 1 5 5 H 1.48498 * 109.47037 * 30.00310 * 3 2 1 6 6 H 1.48499 * 109.47394 * 150.00057 * 3 2 1 7 7 C 1.38801 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99878 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47012 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00438 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99727 * 179.97438 * 11 10 9 14 14 C 1.46572 * 119.98351 * 354.82476 * 13 11 10 15 15 C 1.53114 * 109.88738 * 243.98376 * 14 13 11 16 16 S 1.81760 * 109.21676 * 302.41198 * 15 14 13 17 17 O 1.42093 * 108.68635 * 300.87028 * 16 15 14 18 18 O 1.42095 * 108.79233 * 169.48110 * 16 15 14 19 19 C 1.81498 * 101.14145 * 55.15555 * 16 15 14 20 20 H 1.09000 * 109.59826 * 63.52924 * 19 16 15 21 21 C 1.52900 * 110.21987 * 184.69901 * 19 16 15 22 22 O 1.43075 * 108.89599 * 177.65798 * 21 19 16 23 23 C 1.42801 * 114.57339 * 299.30169 * 22 21 19 24 24 C 1.53251 * 109.85962 * 60.07430 * 23 22 21 25 25 C 1.46153 * 119.97604 * 174.82443 * 13 11 10 26 26 H 1.08996 * 109.18887 * 234.44760 * 25 13 11 27 27 H 0.96996 * 119.99200 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47317 * 59.99553 * 10 9 7 29 29 H 1.08999 * 109.47195 * 299.99555 * 10 9 7 30 30 H 1.09002 * 109.40055 * 123.85710 * 14 13 11 31 31 H 1.08994 * 109.39980 * 4.11313 * 14 13 11 32 32 H 1.08996 * 109.51168 * 182.48569 * 15 14 13 33 33 H 1.08998 * 109.55441 * 62.36280 * 15 14 13 34 34 H 1.08995 * 109.56706 * 297.48897 * 21 19 16 35 35 H 1.09007 * 109.56220 * 57.83816 * 21 19 16 36 36 H 1.08996 * 109.41233 * 299.95021 * 23 22 21 37 37 H 1.09007 * 109.40595 * 180.18904 * 23 22 21 38 38 H 1.08994 * 109.59631 * 183.20035 * 24 23 22 39 39 H 1.09000 * 109.59474 * 62.75486 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9847 -0.0025 11 6 5.5730 -3.2327 -0.0039 12 8 6.3440 -2.2966 -0.0035 13 7 6.0455 -4.4949 -0.0045 14 6 5.1183 -5.6243 0.1106 15 6 5.3854 -6.3869 1.4112 16 16 7.1148 -6.9460 1.4325 17 8 7.3369 -7.7820 0.3052 18 8 7.4224 -7.4330 2.7314 19 6 7.9932 -5.3786 1.1760 20 1 7.8012 -4.7102 2.0154 21 6 9.4954 -5.6305 1.0419 22 8 10.1529 -4.3857 0.7866 23 6 9.7394 -3.7307 -0.4131 24 6 8.2384 -3.4277 -0.3499 25 6 7.4823 -4.7367 -0.1201 26 1 7.6658 -5.4124 -0.9554 27 1 -0.4849 0.8401 0.0004 28 1 3.6432 -3.4311 -0.8926 29 1 3.6440 -3.4323 0.8873 30 1 5.2573 -6.2948 -0.7374 31 1 4.0936 -5.2527 0.1127 32 1 4.7228 -7.2504 1.4695 33 1 5.2043 -5.7309 2.2626 34 1 9.8771 -6.0620 1.9671 35 1 9.6780 -6.3163 0.2145 36 1 9.9428 -4.3767 -1.2671 37 1 10.2926 -2.7983 -0.5258 38 1 7.9161 -2.9795 -1.2897 39 1 8.0385 -2.7408 0.4725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141967687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:38 Heat of formation + Delta-G solvation = -119.882361 kcal Electronic energy + Delta-G solvation = -25796.450654 eV Core-core repulsion = 21959.036313 eV Total energy + Delta-G solvation = -3837.414341 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.00362 -38.88601 -37.50438 -36.53826 -36.40688 -33.64650 -32.54604 -31.73827 -31.07842 -29.25128 -25.77563 -25.33956 -24.44722 -23.91299 -21.40263 -19.95223 -19.18092 -17.91466 -17.52417 -17.29005 -16.80180 -16.46994 -16.34662 -16.17537 -15.76591 -15.32308 -15.06045 -14.64649 -14.20762 -14.15442 -14.01649 -13.67458 -13.53792 -13.03835 -12.87636 -12.79149 -12.54410 -12.43058 -12.35239 -12.22789 -12.12088 -11.75508 -11.37980 -11.15560 -11.11397 -11.10016 -10.73064 -10.54274 -10.17830 -9.95016 -9.16230 -9.09866 -9.00494 -8.64380 -7.05909 -6.39202 -4.12802 -0.47885 2.17311 2.30588 2.52795 2.87990 3.12259 3.24511 3.40641 3.42817 3.48236 3.55145 3.75632 4.05950 4.10342 4.22717 4.32046 4.41451 4.52181 4.64520 4.70987 4.82293 4.94341 4.99375 5.00096 5.11806 5.16187 5.18022 5.23216 5.30392 5.51541 5.54032 5.77078 5.80192 5.97044 6.39461 6.77952 6.96267 7.83487 8.07985 8.30509 9.06553 10.69943 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.003575 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.902885 B = 7829.292730 C = 8875.434704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.524 4.524 8 H 0.089 0.911 9 S -0.138 6.138 10 C -0.130 4.130 11 C 0.539 3.461 12 O -0.496 6.496 13 N -0.629 5.629 14 C 0.116 3.884 15 C -0.621 4.621 16 S 2.422 3.578 17 O -0.930 6.930 18 O -0.934 6.934 19 C -0.627 4.627 20 H 0.153 0.847 21 C 0.089 3.911 22 O -0.367 6.367 23 C 0.050 3.950 24 C -0.142 4.142 25 C 0.164 3.836 26 H 0.096 0.904 27 H 0.272 0.728 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.523 -14.189 0.232 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.672 4.672 8 H 0.107 0.893 9 S 0.089 5.911 10 C -0.280 4.280 11 C 0.327 3.673 12 O -0.369 6.369 13 N -0.365 5.365 14 C -0.008 4.008 15 C -0.752 4.752 16 S 2.604 3.396 17 O -0.927 6.927 18 O -0.931 6.931 19 C -0.737 4.737 20 H 0.171 0.829 21 C 0.010 3.990 22 O -0.285 6.285 23 C -0.027 4.027 24 C -0.180 4.180 25 C 0.059 3.941 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.959 -13.461 0.463 21.656 hybrid contribution -1.635 0.249 -0.105 1.658 sum 15.323 -13.212 0.358 20.236 Atomic orbital electron populations 1.69932 1.05930 1.27901 1.47643 1.24706 0.94445 0.98972 0.93059 0.86741 0.81843 0.83316 0.79969 1.19157 1.19845 1.15981 1.22276 0.88048 0.97572 1.59295 0.89344 1.84813 1.09616 0.99285 1.97436 1.23432 0.93683 1.05015 1.05911 1.20431 0.90839 0.81529 0.74486 1.90721 1.57188 1.42281 1.46678 1.48140 1.05840 1.06688 1.75816 1.21381 0.96796 0.88329 0.94290 1.30593 1.24684 1.12244 1.07690 1.08038 0.78953 0.77205 0.75444 1.93593 1.84109 1.62439 1.52578 1.93610 1.82691 1.77386 1.39394 1.31322 1.10401 1.22999 1.09010 0.82925 1.22220 0.85858 0.87902 1.03009 1.87948 1.62696 1.34439 1.43452 1.22950 0.95635 0.97761 0.86350 1.22781 0.92830 0.95496 1.06884 1.20824 0.80133 1.00010 0.93134 0.88632 0.91820 0.88086 0.88252 0.88479 0.86322 0.83123 0.83986 0.87200 0.91163 0.93147 0.87877 0.89062 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.97 55.49 0.78 -24.81 16 2 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 3 Si 0.86 20.88 27.74 -169.99 -4.71 16.17 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16 7 C -0.52 -14.28 10.04 30.94 0.31 -13.97 16 8 H 0.09 2.51 8.03 -52.49 -0.42 2.09 16 9 S -0.14 -3.21 18.55 -107.50 -1.99 -5.21 16 10 C -0.13 -2.19 4.48 36.01 0.16 -2.03 16 11 C 0.54 8.05 7.58 -10.98 -0.08 7.97 16 12 O -0.50 -8.75 11.39 5.56 0.06 -8.69 16 13 N -0.63 -6.80 2.80 -166.06 -0.47 -7.27 16 14 C 0.12 0.93 6.11 -3.94 -0.02 0.91 16 15 C -0.62 -4.17 6.55 37.22 0.24 -3.93 16 16 S 2.42 21.04 4.70 -107.50 -0.51 20.53 16 17 O -0.93 -9.99 17.96 -57.82 -1.04 -11.03 16 18 O -0.93 -10.96 18.11 -57.82 -1.05 -12.01 16 19 C -0.63 -5.60 2.62 -26.58 -0.07 -5.67 16 20 H 0.15 1.35 8.14 -51.93 -0.42 0.92 16 21 C 0.09 0.78 6.22 37.11 0.23 1.01 16 22 O -0.37 -3.95 10.74 -35.23 -0.38 -4.32 16 23 C 0.05 0.48 6.84 37.29 0.26 0.73 16 24 C -0.14 -1.61 3.86 -26.64 -0.10 -1.71 16 25 C 0.16 1.63 2.49 -67.96 -0.17 1.46 16 26 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.10 1.57 7.92 -51.92 -0.41 1.16 16 29 H 0.10 1.53 7.64 -51.92 -0.40 1.13 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.12 0.91 5.77 -51.93 -0.30 0.61 16 32 H 0.15 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.11 7.43 -51.93 -0.39 0.73 16 39 H 0.12 1.62 6.11 -51.93 -0.32 1.30 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -35.64 333.65 -8.81 -44.45 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.19 Total: -0.25 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 0.66 Total: -12.59 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.31 Total: -32.08 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -2.40 Total: -36.05 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.71 Total: 16.17 kcal Atomic # 16 Polarization: 17.82 SS G_CDS: -2.50 Total: 15.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.64 -8.81 -44.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141967687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.436 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds