Wall clock time and date at job start Tue Mar 31 2020 18:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 120.00082 * 2 1 4 4 H 1.48500 * 109.47014 * 269.72918 * 3 2 1 5 5 H 1.48505 * 109.46828 * 29.72797 * 3 2 1 6 6 H 1.48500 * 109.46819 * 149.72725 * 3 2 1 7 7 C 1.38794 * 119.99964 * 179.73202 * 2 1 3 8 8 H 1.08000 * 120.00126 * 359.97438 * 7 2 1 9 9 S 1.76205 * 120.00061 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99999 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47399 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99711 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00554 * 180.02562 * 11 10 9 14 14 C 1.46354 * 119.61551 * 341.04429 * 13 11 10 15 15 C 1.53204 * 109.45436 * 115.58929 * 14 13 11 16 16 S 1.81660 * 108.87685 * 58.41569 * 15 14 13 17 17 O 1.42097 * 108.63965 * 58.76869 * 16 15 14 18 18 O 1.42094 * 108.64116 * 190.03145 * 16 15 14 19 19 C 1.81568 * 101.46223 * 304.39939 * 16 15 14 20 20 H 1.08998 * 109.57543 * 175.70601 * 19 16 15 21 21 C 1.53023 * 109.48015 * 295.91290 * 19 16 15 22 22 O 1.42929 * 109.37058 * 177.20543 * 21 19 16 23 23 C 1.42881 * 114.16405 * 299.02816 * 22 21 19 24 24 C 1.53095 * 109.48260 * 60.96299 * 23 22 21 25 25 C 1.46389 * 119.62276 * 160.77417 * 13 11 10 26 26 H 1.08998 * 109.61506 * 123.65795 * 25 13 11 27 27 H 0.97005 * 119.99952 * 0.26650 * 1 2 3 28 28 H 1.09007 * 109.47128 * 300.00209 * 10 9 7 29 29 H 1.09004 * 109.47238 * 59.99892 * 10 9 7 30 30 H 1.09002 * 109.47822 * 235.58449 * 14 13 11 31 31 H 1.08996 * 109.47416 * 355.59608 * 14 13 11 32 32 H 1.08996 * 109.56938 * 178.23374 * 15 14 13 33 33 H 1.09003 * 109.56971 * 298.59892 * 15 14 13 34 34 H 1.08997 * 109.48655 * 297.17547 * 21 19 16 35 35 H 1.08999 * 109.48604 * 57.21956 * 21 19 16 36 36 H 1.09001 * 109.46782 * 180.96456 * 23 22 21 37 37 H 1.09005 * 109.47043 * 300.95795 * 23 22 21 38 38 H 1.09003 * 109.53806 * 62.17011 * 24 23 22 39 39 H 1.08991 * 109.53904 * 182.33019 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.5036 2.0431 -1.4001 5 1 1.4448 2.6543 0.6943 6 1 3.5450 1.4418 0.7058 7 6 2.0102 -1.2020 0.0056 8 1 1.4703 -2.1373 0.0104 9 16 3.7723 -1.2020 0.0049 10 6 4.0866 -2.9845 0.0144 11 6 5.5730 -3.2326 0.0145 12 8 6.3440 -2.2963 0.0092 13 7 6.0456 -4.4947 0.0204 14 6 5.1727 -5.5919 0.4398 15 6 4.9343 -6.5352 -0.7436 16 16 6.5362 -7.1618 -1.3277 17 8 7.1787 -7.8362 -0.2546 18 8 6.3360 -7.8436 -2.5581 19 6 7.4291 -5.6161 -1.6593 20 1 8.4545 -5.8421 -1.9519 21 6 6.7298 -4.8548 -2.7876 22 8 7.3959 -3.6087 -3.0027 23 6 7.3923 -2.7401 -1.8682 24 6 8.1162 -3.4193 -0.7028 25 6 7.4243 -4.7530 -0.3984 26 1 7.9579 -5.2708 0.3986 27 1 -0.4850 0.8401 -0.0039 28 1 3.6439 -3.4268 0.9069 29 1 3.6433 -3.4363 -0.8731 30 1 5.6456 -6.1420 1.2534 31 1 4.2193 -5.1880 0.7803 32 1 4.3099 -7.3699 -0.4251 33 1 4.4388 -5.9928 -1.5488 34 1 6.7636 -5.4477 -3.7017 35 1 5.6915 -4.6697 -2.5124 36 1 7.9025 -1.8106 -2.1207 37 1 6.3636 -2.5232 -1.5800 38 1 9.1556 -3.6019 -0.9759 39 1 8.0780 -2.7749 0.1754 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141967689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:48 Heat of formation + Delta-G solvation = -79.958950 kcal Electronic energy + Delta-G solvation = -26535.808991 eV Core-core repulsion = 22700.125859 eV Total energy + Delta-G solvation = -3835.683132 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.75528 -38.25419 -37.56649 -36.70489 -36.42414 -33.59842 -32.56310 -31.60794 -30.96942 -29.07010 -25.77056 -25.31136 -24.65023 -23.93452 -21.64424 -19.84246 -18.74209 -17.98555 -17.47985 -17.40527 -16.88653 -16.53487 -16.42552 -16.33533 -15.82598 -15.11594 -15.00212 -14.57451 -14.24369 -14.02151 -13.81267 -13.57819 -13.49995 -13.22095 -12.91047 -12.74093 -12.63982 -12.51823 -12.41564 -12.25209 -12.15417 -11.43801 -11.39474 -11.19000 -11.11650 -10.84258 -10.76647 -10.13740 -9.97418 -9.56657 -9.23940 -9.11923 -8.92743 -8.68889 -7.08961 -6.40617 -4.15008 -0.45003 2.17819 2.26318 2.34952 2.86006 3.20951 3.23535 3.38848 3.41291 3.48355 3.72705 3.85279 4.01042 4.18678 4.21938 4.33074 4.48930 4.59407 4.64806 4.78533 4.82562 4.90111 4.98571 5.12962 5.15870 5.23728 5.32474 5.35936 5.47589 5.53399 5.74751 5.81544 6.00500 6.16632 6.20877 6.89330 7.08849 7.81841 7.92016 8.29103 9.04879 10.68442 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.003975 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.773647 B = 7041.812653 C = 7644.405337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.098 3.902 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.524 4.524 8 H 0.089 0.911 9 S -0.138 6.138 10 C -0.133 4.133 11 C 0.529 3.471 12 O -0.476 6.476 13 N -0.632 5.632 14 C 0.120 3.880 15 C -0.629 4.629 16 S 2.424 3.576 17 O -0.931 6.931 18 O -0.933 6.933 19 C -0.623 4.623 20 H 0.158 0.842 21 C 0.085 3.915 22 O -0.375 6.375 23 C 0.028 3.972 24 C -0.142 4.142 25 C 0.165 3.835 26 H 0.101 0.899 27 H 0.272 0.728 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 -13.203 -0.839 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.111 4.111 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.672 4.672 8 H 0.107 0.893 9 S 0.088 5.912 10 C -0.283 4.283 11 C 0.319 3.681 12 O -0.350 6.350 13 N -0.369 5.369 14 C -0.004 4.004 15 C -0.759 4.759 16 S 2.606 3.394 17 O -0.928 6.928 18 O -0.930 6.930 19 C -0.733 4.733 20 H 0.176 0.824 21 C 0.007 3.993 22 O -0.293 6.293 23 C -0.047 4.047 24 C -0.180 4.180 25 C 0.060 3.940 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.727 -12.532 -1.113 19.369 hybrid contribution -1.183 0.175 0.209 1.214 sum 13.544 -12.357 -0.905 18.356 Atomic orbital electron populations 1.69928 1.05930 1.27930 1.47514 1.24702 0.94441 0.98961 0.93032 0.86756 0.81834 0.83352 0.80005 1.19142 1.19830 1.15958 1.22253 0.87901 0.97591 1.59433 0.89301 1.84777 1.09885 0.99065 1.97441 1.23496 0.93629 1.05152 1.06017 1.20207 0.90724 0.81651 0.75542 1.90678 1.57513 1.43157 1.43698 1.48002 1.12315 1.07516 1.69116 1.21389 0.97730 0.87321 0.93956 1.30683 1.23033 1.11750 1.10438 1.07986 0.78594 0.77087 0.75763 1.93599 1.73619 1.69951 1.55630 1.93605 1.85239 1.69945 1.44237 1.31121 1.15887 1.19808 1.06486 0.82450 1.22231 0.94566 0.86497 0.96045 1.87937 1.77171 1.26740 1.37496 1.24080 1.04460 0.92114 0.84029 1.22621 0.98261 0.94636 1.02472 1.20747 0.82689 0.98206 0.92347 0.88086 0.91793 0.87991 0.88245 0.88278 0.86419 0.83056 0.83926 0.87216 0.92249 0.88765 0.88002 0.91619 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 13.97 55.49 0.78 -24.54 16 2 C 0.10 2.71 5.50 -17.43 -0.10 2.61 16 3 Si 0.86 20.60 27.73 -169.99 -4.71 15.88 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.24 -5.60 6.74 56.52 0.38 -5.21 16 7 C -0.52 -14.04 10.04 30.94 0.31 -13.72 16 8 H 0.09 2.49 8.03 -52.49 -0.42 2.06 16 9 S -0.14 -3.11 18.55 -107.50 -1.99 -5.11 16 10 C -0.13 -2.15 4.95 36.00 0.18 -1.97 16 11 C 0.53 7.47 5.68 -10.99 -0.06 7.41 16 12 O -0.48 -7.78 9.46 5.55 0.05 -7.73 16 13 N -0.63 -6.58 2.15 -166.13 -0.36 -6.94 16 14 C 0.12 0.92 6.02 -4.02 -0.02 0.90 16 15 C -0.63 -4.14 6.12 37.26 0.23 -3.91 16 16 S 2.42 21.14 4.82 -107.50 -0.52 20.62 16 17 O -0.93 -10.36 18.02 -57.81 -1.04 -11.40 16 18 O -0.93 -10.93 17.84 -57.81 -1.03 -11.96 16 19 C -0.62 -5.53 2.85 -26.82 -0.08 -5.60 16 20 H 0.16 1.15 8.14 -51.93 -0.42 0.73 16 21 C 0.09 0.90 5.74 37.17 0.21 1.11 16 22 O -0.38 -5.07 10.76 -35.23 -0.38 -5.45 16 23 C 0.03 0.38 5.61 37.21 0.21 0.59 16 24 C -0.14 -1.63 5.10 -26.53 -0.14 -1.76 16 25 C 0.16 1.61 2.99 -67.94 -0.20 1.41 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.10 1.50 6.94 -51.91 -0.36 1.14 16 29 H 0.10 1.50 8.14 -51.91 -0.42 1.07 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.12 0.85 5.82 -51.93 -0.30 0.55 16 32 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.14 0.86 7.09 -51.93 -0.37 0.49 16 34 H 0.11 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.06 0.60 6.26 -51.93 -0.33 0.27 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 1.60 3.97 -56.34 -0.22 1.38 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.12 1.51 6.12 -51.85 -0.32 1.20 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -34.85 322.48 -8.66 -43.51 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.85 Total: 1.19 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 0.54 Total: -12.94 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.42 Total: -31.48 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -2.40 Total: -36.53 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.71 Total: 15.88 kcal Atomic # 16 Polarization: 18.03 SS G_CDS: -2.51 Total: 15.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.85 -8.66 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141967689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.454 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds