Wall clock time and date at job start Tue Mar 31 2020 19:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48500 * 109.47115 * 265.04048 * 3 2 1 5 5 H 1.48493 * 109.47158 * 25.04375 * 3 2 1 6 6 H 1.48499 * 109.46940 * 145.04161 * 3 2 1 7 7 C 1.39869 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 165.98374 * 7 2 1 9 9 C 1.41194 * 119.99854 * 345.99428 * 7 2 1 10 10 C 1.40793 * 120.56489 * 153.98761 * 9 7 2 11 11 N 1.31478 * 120.38830 * 180.28201 * 10 9 7 12 12 C 1.32750 * 121.73874 * 359.73548 * 11 10 9 13 13 N 1.38397 * 119.43595 * 180.02562 * 12 11 10 14 14 C 1.47068 * 111.00270 * 272.54340 * 13 12 11 15 15 C 1.50652 * 109.26034 * 180.43655 * 14 13 12 16 16 O 1.21233 * 119.67287 * 151.19703 * 15 14 13 17 17 N 1.34445 * 120.65463 * 331.20742 * 15 14 13 18 18 C 1.46504 * 119.32086 * 180.44847 * 17 15 14 19 19 C 1.52999 * 117.49838 * 132.35483 * 18 17 15 20 20 C 1.53001 * 117.49673 * 63.69853 * 18 17 15 21 21 C 1.34448 * 121.36443 * 0.42169 * 17 15 14 22 22 O 1.21221 * 119.67900 * 179.53007 * 21 17 15 23 23 C 1.47074 * 111.00409 * 35.67442 * 13 12 11 24 24 C 1.39796 * 121.12451 * 0.02562 * 12 11 10 25 25 Cl 1.73593 * 120.25964 * 179.97438 * 24 12 11 26 26 C 1.36668 * 119.47404 * 0.02562 * 24 12 11 27 27 H 0.96995 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.80676 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.50819 * 300.38809 * 14 13 12 30 30 H 1.09004 * 109.51318 * 60.52105 * 14 13 12 31 31 H 1.08997 * 115.54914 * 278.02871 * 18 17 15 32 32 H 1.09000 * 117.49853 * 0.02562 * 19 18 17 33 33 H 1.08999 * 117.49746 * 145.02601 * 19 18 17 34 34 H 1.09001 * 117.49547 * 214.98217 * 20 18 17 35 35 H 1.09000 * 117.50091 * 359.97224 * 20 18 17 36 36 H 1.08998 * 109.50683 * 299.48239 * 23 13 12 37 37 H 1.09003 * 109.50751 * 59.60942 * 23 13 12 38 38 H 1.07992 * 120.79520 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.5954 1.9859 -1.3948 5 1 1.3921 2.6806 0.5926 6 1 3.4843 1.4726 0.8022 7 6 2.0084 -1.2113 0.0005 8 1 3.0643 -1.2253 -0.2260 9 6 1.3339 -2.4158 0.2970 10 6 1.8099 -3.6440 -0.2001 11 7 1.1760 -4.7628 0.0736 12 6 0.0804 -4.7794 0.8231 13 7 -0.5487 -5.9847 1.0816 14 6 -1.5170 -6.3114 0.0240 15 6 -2.1849 -7.6220 0.3493 16 8 -3.3138 -7.8329 -0.0390 17 7 -1.5415 -8.5599 1.0661 18 6 -2.2151 -9.8280 1.3571 19 6 -1.4306 -11.1179 1.1091 20 6 -2.5748 -10.7253 0.1712 21 6 -0.2924 -8.3586 1.5209 22 8 0.2559 -9.2219 2.1716 23 6 0.4324 -7.0702 1.2302 24 6 -0.4486 -3.6001 1.3557 25 17 -1.8829 -3.6476 2.3324 26 6 0.1718 -2.4094 1.1004 27 1 -0.4849 0.8400 0.0004 28 1 2.6987 -3.6668 -0.8132 29 1 -2.2689 -5.5246 -0.0368 30 1 -0.9985 -6.3948 -0.9312 31 1 -2.9027 -9.8117 2.2027 32 1 -0.4131 -11.0231 0.7298 33 1 -1.6023 -11.9504 1.7913 34 1 -3.4988 -11.2996 0.2368 35 1 -2.3106 -10.3720 -0.8256 36 1 1.0031 -7.1738 0.3073 37 1 1.1089 -6.8394 2.0532 38 1 -0.2187 -1.4855 1.5007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164186581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:00 Heat of formation + Delta-G solvation = 3.791450 kcal Electronic energy + Delta-G solvation = -26295.132211 eV Core-core repulsion = 22357.885862 eV Total energy + Delta-G solvation = -3937.246349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60973 -39.23985 -38.65239 -37.09621 -36.26316 -35.58578 -34.33855 -33.49736 -30.83551 -29.95416 -28.82360 -27.05283 -24.58901 -23.59423 -22.57900 -22.19287 -21.91848 -21.09177 -18.34160 -17.80284 -17.59720 -17.44872 -16.41392 -16.32467 -15.92786 -15.28752 -15.00308 -14.82454 -14.42462 -14.22504 -14.03360 -13.63782 -13.29463 -13.16733 -12.95149 -12.65039 -12.31339 -12.06495 -11.81866 -11.67209 -11.60828 -11.44779 -11.07746 -11.05426 -10.90395 -10.61231 -10.54700 -10.27414 -10.08202 -9.99297 -9.67852 -9.62491 -9.01720 -8.40842 -8.37215 -7.68583 -7.18284 -4.84013 1.63601 2.11175 2.48255 2.53077 2.77147 2.85804 2.87032 2.92249 3.12491 3.48026 3.61660 3.94857 4.11276 4.24362 4.56072 4.69251 4.75617 4.86641 5.09315 5.28042 5.39297 5.40513 5.48688 5.62065 5.67073 5.72895 5.87490 5.92078 5.99474 6.23371 6.35488 6.59832 6.72016 6.74091 6.79193 7.08022 7.33283 7.48061 7.51589 7.69189 7.85768 8.02151 8.28708 8.29594 9.05931 9.71673 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.003098 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.150829 B = 9035.704933 C = 9466.163928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.428 4.428 8 H 0.091 0.909 9 C 0.075 3.925 10 C -0.005 4.005 11 N -0.469 5.469 12 C 0.120 3.880 13 N -0.445 5.445 14 C 0.033 3.967 15 C 0.536 3.464 16 O -0.496 6.496 17 N -0.544 5.544 18 C 0.052 3.948 19 C -0.155 4.155 20 C -0.166 4.166 21 C 0.533 3.467 22 O -0.498 6.498 23 C 0.043 3.957 24 C -0.006 4.006 25 Cl -0.094 7.094 26 C -0.129 4.129 27 H 0.291 0.709 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 -8.703 0.314 8.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.151 4.151 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.457 4.457 8 H 0.109 0.891 9 C 0.070 3.930 10 C -0.170 4.170 11 N -0.179 5.179 12 C -0.107 4.107 13 N -0.169 5.169 14 C -0.096 4.096 15 C 0.326 3.674 16 O -0.367 6.367 17 N -0.287 5.287 18 C -0.051 4.051 19 C -0.192 4.192 20 C -0.204 4.204 21 C 0.323 3.677 22 O -0.370 6.370 23 C -0.087 4.087 24 C -0.037 4.037 25 Cl -0.066 7.066 26 C -0.155 4.155 27 H 0.102 0.898 28 H 0.154 0.846 29 H 0.142 0.858 30 H 0.102 0.898 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.141 0.859 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.244 -9.868 0.665 10.141 hybrid contribution 0.228 1.631 -0.344 1.682 sum -2.015 -8.236 0.321 8.486 Atomic orbital electron populations 1.69768 1.07773 1.30578 1.31623 1.26096 0.94973 1.02145 0.91921 0.86114 0.80433 0.79368 0.79846 1.18950 1.19746 1.18082 1.19645 0.97304 0.90280 1.38469 0.89094 1.18491 0.91374 0.93939 0.89207 1.22389 1.02433 0.87343 1.04867 1.66983 1.07425 1.32206 1.11331 1.18095 0.97284 0.87802 1.07558 1.60215 1.14751 1.00831 1.41117 1.22672 0.97714 0.93818 0.95427 1.21055 0.85950 0.84916 0.75448 1.90711 1.17451 1.79377 1.49208 1.46393 1.16118 1.16312 1.49889 1.21720 1.01240 0.80819 1.01282 1.23202 0.97384 0.96284 1.02348 1.23247 1.00159 1.01723 0.95249 1.21238 0.80043 0.89447 0.76999 1.90700 1.65416 1.45065 1.35801 1.22390 0.94547 0.86177 1.05559 1.21005 0.90426 0.94477 0.97781 1.98284 1.39039 1.98912 1.70340 1.21377 0.98181 0.95853 1.00095 0.89816 0.84601 0.85794 0.89768 0.85723 0.88042 0.87545 0.87526 0.88537 0.88533 0.85942 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.27 10.88 55.54 0.60 -16.66 16 2 C 0.07 1.49 5.23 -17.34 -0.09 1.40 16 3 Si 0.92 16.00 29.58 -169.99 -5.03 10.97 16 4 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 6 H -0.26 -4.46 7.11 56.52 0.40 -4.05 16 7 C -0.43 -9.50 9.07 -37.85 -0.34 -9.84 16 8 H 0.09 1.88 7.88 -52.49 -0.41 1.47 16 9 C 0.08 1.70 5.58 -106.65 -0.59 1.11 16 10 C -0.01 -0.11 10.97 -16.74 -0.18 -0.29 16 11 N -0.47 -9.52 9.06 -11.75 -0.11 -9.63 16 12 C 0.12 2.39 5.62 -155.06 -0.87 1.51 16 13 N -0.45 -7.68 4.10 -175.58 -0.72 -8.40 16 14 C 0.03 0.53 5.52 -4.91 -0.03 0.50 16 15 C 0.54 8.45 7.51 -11.16 -0.08 8.36 16 16 O -0.50 -8.64 16.56 5.60 0.09 -8.55 16 17 N -0.54 -8.06 2.86 -108.47 -0.31 -8.38 16 18 C 0.05 0.67 5.39 -67.93 -0.37 0.31 16 19 C -0.15 -1.70 9.18 -26.70 -0.25 -1.95 16 20 C -0.17 -1.81 9.79 -26.69 -0.26 -2.07 16 21 C 0.53 8.21 7.42 -11.16 -0.08 8.13 16 22 O -0.50 -8.38 15.43 5.61 0.09 -8.29 16 23 C 0.04 0.68 5.15 -4.90 -0.03 0.65 16 24 C -0.01 -0.13 6.32 -39.57 -0.25 -0.38 16 25 Cl -0.09 -1.80 28.43 -51.86 -1.47 -3.27 16 26 C -0.13 -2.92 8.50 -38.99 -0.33 -3.25 16 27 H 0.29 5.90 8.30 -40.82 -0.34 5.56 16 28 H 0.14 2.60 8.06 -52.48 -0.42 2.18 16 29 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.10 1.23 7.39 -51.93 -0.38 0.85 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.10 1.47 7.57 -51.93 -0.39 1.08 16 37 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 38 H 0.14 3.33 6.24 -52.49 -0.33 3.00 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -24.87 341.91 -9.50 -34.37 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.03 Total: 8.49 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.76 Total: 4.19 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.53 Total: -43.06 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.84 kcal Atomic # 14 Polarization: 16.00 SS G_CDS: -5.03 Total: 10.97 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.47 Total: -3.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -24.87 -9.50 -34.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164186581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.160 kcal (2) G-P(sol) polarization free energy of solvation -24.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds