Wall clock time and date at job start Tue Mar 31 2020 19:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48500 * 109.47115 * 265.04048 * 3 2 1 5 5 H 1.48493 * 109.47158 * 25.04375 * 3 2 1 6 6 H 1.48499 * 109.46940 * 145.04161 * 3 2 1 7 7 C 1.39869 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 165.98374 * 7 2 1 9 9 C 1.41194 * 119.99854 * 345.99428 * 7 2 1 10 10 C 1.40793 * 120.56489 * 153.98761 * 9 7 2 11 11 N 1.31478 * 120.38830 * 180.28201 * 10 9 7 12 12 C 1.32750 * 121.73874 * 359.73548 * 11 10 9 13 13 N 1.38397 * 119.43595 * 180.02562 * 12 11 10 14 14 C 1.47068 * 111.00270 * 272.54340 * 13 12 11 15 15 C 1.50652 * 109.26034 * 180.43655 * 14 13 12 16 16 O 1.21233 * 119.67287 * 151.19703 * 15 14 13 17 17 N 1.34445 * 120.65463 * 331.20742 * 15 14 13 18 18 C 1.46504 * 119.32086 * 180.44847 * 17 15 14 19 19 C 1.52999 * 117.49838 * 132.35483 * 18 17 15 20 20 C 1.53001 * 117.49673 * 63.69853 * 18 17 15 21 21 C 1.34448 * 121.36443 * 0.42169 * 17 15 14 22 22 O 1.21221 * 119.67900 * 179.53007 * 21 17 15 23 23 C 1.47074 * 111.00409 * 35.67442 * 13 12 11 24 24 C 1.39796 * 121.12451 * 0.02562 * 12 11 10 25 25 Cl 1.73593 * 120.25964 * 179.97438 * 24 12 11 26 26 C 1.36668 * 119.47404 * 0.02562 * 24 12 11 27 27 H 0.96995 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.80676 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.50819 * 300.38809 * 14 13 12 30 30 H 1.09004 * 109.51318 * 60.52105 * 14 13 12 31 31 H 1.08997 * 115.54914 * 278.02871 * 18 17 15 32 32 H 1.09000 * 117.49853 * 0.02562 * 19 18 17 33 33 H 1.08999 * 117.49746 * 145.02601 * 19 18 17 34 34 H 1.09001 * 117.49547 * 214.98217 * 20 18 17 35 35 H 1.09000 * 117.50091 * 359.97224 * 20 18 17 36 36 H 1.08998 * 109.50683 * 299.48239 * 23 13 12 37 37 H 1.09003 * 109.50751 * 59.60942 * 23 13 12 38 38 H 1.07992 * 120.79520 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.5954 1.9859 -1.3948 5 1 1.3921 2.6806 0.5926 6 1 3.4843 1.4726 0.8022 7 6 2.0084 -1.2113 0.0005 8 1 3.0643 -1.2253 -0.2260 9 6 1.3339 -2.4158 0.2970 10 6 1.8099 -3.6440 -0.2001 11 7 1.1760 -4.7628 0.0736 12 6 0.0804 -4.7794 0.8231 13 7 -0.5487 -5.9847 1.0816 14 6 -1.5170 -6.3114 0.0240 15 6 -2.1849 -7.6220 0.3493 16 8 -3.3138 -7.8329 -0.0390 17 7 -1.5415 -8.5599 1.0661 18 6 -2.2151 -9.8280 1.3571 19 6 -1.4306 -11.1179 1.1091 20 6 -2.5748 -10.7253 0.1712 21 6 -0.2924 -8.3586 1.5209 22 8 0.2559 -9.2219 2.1716 23 6 0.4324 -7.0702 1.2302 24 6 -0.4486 -3.6001 1.3557 25 17 -1.8829 -3.6476 2.3324 26 6 0.1718 -2.4094 1.1004 27 1 -0.4849 0.8400 0.0004 28 1 2.6987 -3.6668 -0.8132 29 1 -2.2689 -5.5246 -0.0368 30 1 -0.9985 -6.3948 -0.9312 31 1 -2.9027 -9.8117 2.2027 32 1 -0.4131 -11.0231 0.7298 33 1 -1.6023 -11.9504 1.7913 34 1 -3.4988 -11.2996 0.2368 35 1 -2.3106 -10.3720 -0.8256 36 1 1.0031 -7.1738 0.3073 37 1 1.1089 -6.8394 2.0532 38 1 -0.2187 -1.4855 1.5007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164186581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:59 Heat of formation + Delta-G solvation = -8.420409 kcal Electronic energy + Delta-G solvation = -26295.661757 eV Core-core repulsion = 22357.885862 eV Total energy + Delta-G solvation = -3937.775895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86595 -40.78890 -39.95548 -38.33365 -37.54928 -37.18836 -35.86782 -34.76683 -32.48511 -31.54215 -30.14519 -28.52381 -26.10714 -24.79441 -23.94924 -23.38619 -23.07459 -22.62613 -19.59617 -19.38103 -18.91173 -18.79687 -17.69632 -17.63628 -17.38025 -16.83750 -16.30689 -16.06623 -15.95694 -15.51815 -15.25703 -14.98404 -14.66820 -14.55143 -14.18252 -14.11910 -13.88006 -13.67306 -13.26803 -13.04428 -12.90874 -12.60947 -12.53583 -12.44483 -12.10860 -12.01056 -11.68038 -11.64853 -11.46739 -11.28684 -11.20760 -10.76467 -10.54587 -10.06923 -9.92836 -9.29143 -8.77583 -6.51629 0.32696 0.50939 0.84082 1.30392 1.43158 1.47736 1.49625 1.52597 1.57467 2.16823 2.47230 2.49669 2.65512 2.96631 3.46612 3.47731 3.68322 3.79591 3.84756 3.93972 3.97940 4.25443 4.35852 4.36726 4.48952 4.64155 4.65713 4.69343 4.88222 4.96072 5.00269 5.09377 5.09974 5.14489 5.37731 5.68644 5.78645 5.84952 6.08384 6.22388 6.37886 6.60589 6.64782 6.64997 7.40130 8.14883 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.003098 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.150829 B = 9035.704933 C = 9466.163928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.035 3.965 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.453 4.453 8 H 0.100 0.900 9 C 0.053 3.947 10 C -0.010 4.010 11 N -0.467 5.467 12 C 0.130 3.870 13 N -0.450 5.450 14 C 0.037 3.963 15 C 0.545 3.455 16 O -0.512 6.512 17 N -0.541 5.541 18 C 0.020 3.980 19 C -0.143 4.143 20 C -0.154 4.154 21 C 0.540 3.460 22 O -0.510 6.510 23 C 0.048 3.952 24 C -0.017 4.017 25 Cl -0.080 7.080 26 C -0.145 4.145 27 H 0.296 0.704 28 H 0.153 0.847 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 -9.555 0.203 9.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.482 4.482 8 H 0.118 0.882 9 C 0.048 3.952 10 C -0.175 4.175 11 N -0.178 5.178 12 C -0.098 4.098 13 N -0.174 5.174 14 C -0.092 4.092 15 C 0.335 3.665 16 O -0.384 6.384 17 N -0.284 5.284 18 C -0.082 4.082 19 C -0.180 4.180 20 C -0.191 4.191 21 C 0.331 3.669 22 O -0.382 6.382 23 C -0.082 4.082 24 C -0.047 4.047 25 Cl -0.051 7.051 26 C -0.172 4.172 27 H 0.107 0.893 28 H 0.171 0.829 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.149 0.851 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.060 -10.747 0.554 10.957 hybrid contribution 0.101 1.773 -0.282 1.798 sum -1.959 -8.975 0.272 9.190 Atomic orbital electron populations 1.69820 1.09115 1.31635 1.32429 1.26873 0.95524 1.04935 0.90983 0.85106 0.79030 0.75292 0.79863 1.18450 1.19535 1.17814 1.19939 0.97888 0.90870 1.39475 0.88244 1.18769 0.91796 0.94913 0.89740 1.22667 1.02923 0.87086 1.04810 1.67068 1.07538 1.31829 1.11337 1.18263 0.96799 0.88435 1.06315 1.60132 1.15074 1.00492 1.41685 1.22603 0.97228 0.93976 0.95423 1.20859 0.85570 0.84822 0.75244 1.90706 1.18043 1.79673 1.49977 1.46338 1.15847 1.16976 1.49221 1.22085 1.02650 0.80527 1.02944 1.23248 0.96698 0.95644 1.02407 1.23316 1.01088 1.00600 0.94120 1.21059 0.80142 0.89036 0.76675 1.90699 1.65716 1.45407 1.36385 1.22362 0.94228 0.85739 1.05865 1.21132 0.90960 0.94545 0.98077 1.98278 1.38100 1.98890 1.69867 1.21316 0.98979 0.95863 1.00999 0.89299 0.82935 0.86469 0.88826 0.85080 0.89250 0.85307 0.85327 0.89377 0.87825 0.86110 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.47 10.88 21.82 0.24 -36.23 16 2 C 0.04 1.50 5.23 85.23 0.45 1.94 16 3 Si 0.99 32.41 29.58 68.60 2.03 34.44 16 4 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 5 H -0.27 -8.71 7.11 99.48 0.71 -8.00 16 6 H -0.25 -8.17 7.11 99.48 0.71 -7.47 16 7 C -0.45 -20.21 9.07 23.39 0.21 -20.00 16 8 H 0.10 4.10 7.88 -2.91 -0.02 4.07 16 9 C 0.05 2.43 5.58 -21.18 -0.12 2.31 16 10 C -0.01 -0.43 10.97 85.37 0.94 0.51 16 11 N -0.47 -18.64 9.06 -191.08 -1.73 -20.37 16 12 C 0.13 5.09 5.62 133.33 0.75 5.84 16 13 N -0.45 -15.11 4.10 -709.43 -2.91 -18.02 16 14 C 0.04 1.15 5.52 85.51 0.47 1.62 16 15 C 0.54 16.53 7.51 87.69 0.66 17.19 16 16 O -0.51 -17.22 16.56 -2.88 -0.05 -17.26 16 17 N -0.54 -15.33 2.86 -734.29 -2.10 -17.43 16 18 C 0.02 0.48 5.39 44.99 0.24 0.72 16 19 C -0.14 -2.82 9.18 30.62 0.28 -2.54 16 20 C -0.15 -3.01 9.79 30.62 0.30 -2.71 16 21 C 0.54 15.96 7.42 87.69 0.65 16.61 16 22 O -0.51 -16.42 15.43 -2.85 -0.04 -16.46 16 23 C 0.05 1.44 5.15 85.51 0.44 1.88 16 24 C -0.02 -0.70 6.32 22.28 0.14 -0.56 16 25 Cl -0.08 -3.03 28.43 -2.72 -0.08 -3.11 16 26 C -0.15 -6.69 8.50 22.65 0.19 -6.50 16 27 H 0.30 12.16 8.30 -92.71 -0.77 11.39 16 28 H 0.15 5.72 8.06 -2.91 -0.02 5.70 16 29 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.09 2.02 7.39 -2.39 -0.02 2.00 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.10 3.01 7.57 -2.39 -0.02 2.99 16 37 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 38 H 0.13 6.15 6.24 -2.91 -0.02 6.13 16 Total: -1.00 -52.06 341.91 2.07 -49.99 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 1.12 Total: 28.13 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 5.60 Total: 16.32 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -6.51 Total: -92.05 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.09 Total: -33.72 kcal Atomic # 14 Polarization: 32.41 SS G_CDS: 2.03 Total: 34.44 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.08 Total: -3.11 kcal Total: -52.06 2.07 -49.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164186581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.569 kcal (2) G-P(sol) polarization free energy of solvation -52.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds