Wall clock time and date at job start Tue Mar 31 2020 19:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43201 * 119.99605 * 87.52096 * 3 2 1 5 5 N 3.51030 * 140.68594 * 87.51873 * 2 1 3 6 6 C 1.41148 * 120.00246 * 267.52104 * 3 2 1 7 7 C 1.38993 * 119.99740 * 5.38123 * 6 3 2 8 8 H 1.08000 * 119.99920 * 339.48435 * 7 6 3 9 9 C 1.40840 * 119.99653 * 159.48542 * 7 6 3 10 10 N 1.30333 * 120.00231 * 350.66280 * 9 7 6 11 11 Si 1.86807 * 119.99732 * 170.66181 * 9 7 6 12 12 H 1.48492 * 109.46977 * 90.00181 * 11 9 7 13 13 H 1.48501 * 109.46690 * 210.00258 * 11 9 7 14 14 H 1.48503 * 109.46800 * 329.99627 * 11 9 7 15 15 N 1.38340 * 120.00060 * 185.38014 * 6 3 2 16 16 C 1.39291 * 120.00076 * 120.19689 * 15 6 3 17 17 N 1.32310 * 119.73736 * 358.35163 * 16 15 6 18 18 C 1.31980 * 121.69064 * 180.02562 * 17 16 15 19 19 C 1.38082 * 120.98153 * 0.02562 * 18 17 16 20 20 C 1.38775 * 119.38311 * 359.70567 * 19 18 17 21 21 C 1.38878 * 118.43785 * 0.53596 * 20 19 18 22 22 N 1.40349 * 120.50679 * 179.76033 * 21 20 19 23 23 C 1.34510 * 125.20404 * 269.41503 * 22 21 20 24 24 O 1.21400 * 125.79388 * 0.24360 * 23 22 21 25 25 C 1.47973 * 108.41257 * 180.26540 * 23 22 21 26 26 C 1.34349 * 106.79231 * 359.97438 * 25 23 22 27 27 C 1.34521 * 125.20089 * 89.72327 * 22 21 20 28 28 O 1.21409 * 125.79313 * 359.75205 * 27 22 21 29 29 H 0.97001 * 120.00055 * 185.07295 * 10 9 7 30 30 H 0.97002 * 119.99697 * 300.19353 * 15 6 3 31 31 H 1.07993 * 119.51000 * 179.97438 * 18 17 16 32 32 H 1.08002 * 120.30655 * 179.97438 * 19 18 17 33 33 H 1.07995 * 120.78158 * 180.27331 * 20 19 18 34 34 H 1.08007 * 126.59994 * 179.97438 * 25 23 22 35 35 H 1.07993 * 126.60870 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2839 -0.0527 -1.2390 5 7 3.8519 -0.0963 -2.2219 6 6 3.2738 0.0538 1.2212 7 6 2.5834 -0.0073 2.4260 8 1 1.5315 0.2353 2.4586 9 6 3.2557 -0.3856 3.6044 10 7 4.4710 -0.8521 3.5402 11 14 2.4055 -0.2186 5.2594 12 1 1.6748 -1.4736 5.5692 13 1 3.4200 0.0367 6.3134 14 1 1.4462 0.9139 5.2109 15 7 4.6525 0.1668 1.2189 16 6 5.2627 1.2606 1.8285 17 7 4.5177 2.2050 2.3795 18 6 5.0551 3.2578 2.9666 19 6 6.4255 3.4150 3.0280 20 6 7.2477 2.4470 2.4686 21 6 6.6558 1.3521 1.8525 22 7 7.4459 0.3501 1.2683 23 6 7.8585 0.3357 -0.0119 24 8 7.6145 1.1833 -0.8461 25 6 8.6599 -0.8887 -0.2310 26 6 8.6867 -1.5495 0.9385 27 6 7.9014 -0.7460 1.9014 28 8 7.7022 -1.0279 3.0654 29 1 4.9072 -1.1812 4.3416 30 1 5.1943 -0.5158 0.7929 31 1 4.4134 4.0078 3.4047 32 1 6.8536 4.2811 3.5108 33 1 8.3225 2.5450 2.5077 34 1 9.1324 -1.1927 -1.1534 35 1 9.1844 -2.4871 1.1372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:28 Heat of formation + Delta-G solvation = 95.814179 kcal Electronic energy + Delta-G solvation = -28368.188133 eV Core-core repulsion = 24333.824696 eV Total energy + Delta-G solvation = -4034.363438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.080 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35259 -39.75123 -38.45498 -37.23429 -36.03651 -35.20223 -34.65436 -34.01962 -33.50748 -31.50817 -30.41902 -28.31459 -27.06497 -25.26852 -23.87397 -23.15187 -21.50733 -21.20454 -20.28691 -19.01752 -18.02943 -17.52655 -17.28750 -16.41682 -16.20554 -15.96788 -15.62163 -15.54522 -14.93339 -14.39425 -14.18524 -13.92836 -13.88885 -13.81877 -13.44753 -13.03762 -12.71586 -12.53895 -12.29926 -12.21653 -11.74229 -11.64295 -11.50718 -11.47186 -11.00975 -10.91470 -10.85019 -10.74754 -10.35373 -10.29301 -10.20156 -10.05492 -10.00223 -9.37996 -8.91368 -8.22505 -7.72528 -7.01804 -5.33999 0.07512 1.36548 1.69220 2.30760 2.42881 2.57909 2.74752 2.81566 2.85982 2.92086 3.44809 3.66730 3.80783 3.93300 4.11956 4.15444 4.26102 4.32216 4.39616 4.90872 5.06412 5.13867 5.19638 5.24621 5.27528 5.42043 5.53856 5.56382 5.72091 6.01215 6.17418 6.28047 6.37676 6.43249 6.65920 6.76431 7.11620 7.27642 7.31083 7.56179 7.77494 7.80290 8.00423 8.27907 8.69856 9.02696 9.20291 9.27505 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.006448 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.289717 B = 4341.389388 C = 5454.999848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C 0.328 3.672 3 C -0.318 4.318 4 C 0.305 3.695 5 N -0.534 5.534 6 C 0.377 3.623 7 C -0.340 4.340 8 H 0.111 0.889 9 C 0.073 3.927 10 N -0.717 5.717 11 Si 0.925 3.075 12 H -0.259 1.259 13 H -0.268 1.268 14 H -0.247 1.247 15 N -0.629 5.629 16 C 0.470 3.530 17 N -0.505 5.505 18 C 0.164 3.836 19 C -0.245 4.245 20 C -0.017 4.017 21 C -0.007 4.007 22 N -0.529 5.529 23 C 0.531 3.469 24 O -0.442 6.442 25 C -0.140 4.140 26 C -0.140 4.140 27 C 0.535 3.465 28 O -0.429 6.429 29 H 0.305 0.695 30 H 0.401 0.599 31 H 0.157 0.843 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.182 0.818 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.698 0.722 6.536 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.220 5.220 2 C 0.021 3.979 3 C -0.336 4.336 4 C -0.002 4.002 5 N -0.217 5.217 6 C 0.274 3.726 7 C -0.368 4.368 8 H 0.128 0.872 9 C -0.159 4.159 10 N -0.336 5.336 11 Si 0.747 3.253 12 H -0.184 1.184 13 H -0.193 1.193 14 H -0.170 1.170 15 N -0.250 5.250 16 C 0.232 3.768 17 N -0.221 5.221 18 C 0.003 3.997 19 C -0.268 4.268 20 C -0.044 4.044 21 C -0.103 4.103 22 N -0.270 5.270 23 C 0.320 3.680 24 O -0.311 6.311 25 C -0.162 4.162 26 C -0.161 4.161 27 C 0.323 3.677 28 O -0.297 6.297 29 H 0.117 0.883 30 H 0.238 0.762 31 H 0.174 0.826 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.199 0.801 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.709 0.835 5.307 12.883 hybrid contribution 1.261 -0.248 1.012 1.636 sum 12.970 0.587 6.319 14.439 Atomic orbital electron populations 1.81046 1.12178 1.19901 1.08862 1.24622 0.91222 0.90113 0.91944 1.12826 0.83117 1.51771 0.85932 1.25248 0.92596 0.90353 0.91955 1.81069 1.09658 1.20107 1.10846 1.16629 0.79449 0.85853 0.90647 1.20209 0.98160 1.27564 0.90826 0.87153 1.26518 0.94329 0.92029 1.03003 1.69430 1.10541 1.19198 1.34418 0.85939 0.80221 0.81075 0.78080 1.18389 1.19275 1.17007 1.41278 1.05568 1.21526 1.56616 1.18004 0.85790 0.86530 0.86432 1.67493 1.38228 1.02690 1.13721 1.22590 0.92765 0.92966 0.91391 1.21617 0.94652 1.01870 1.08694 1.21213 0.99929 0.91106 0.92136 1.17486 0.88330 0.93544 1.10916 1.43773 1.48528 1.22199 1.12462 1.19604 0.79682 0.87290 0.81436 1.90835 1.52966 1.40937 1.46331 1.24620 0.97537 0.93637 1.00415 1.24643 0.97701 1.00480 0.93303 1.19469 0.79485 0.80883 0.87896 1.90809 1.53128 1.70206 1.15539 0.88316 0.76188 0.82594 0.85040 0.85447 0.80116 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -13.21 18.54 41.84 0.78 -12.44 16 2 C 0.33 7.86 13.90 -22.47 -0.31 7.55 16 3 C -0.32 -7.37 5.88 -104.94 -0.62 -7.99 16 4 C 0.31 7.30 14.80 -22.47 -0.33 6.97 16 5 N -0.53 -13.18 18.54 41.84 0.78 -12.40 16 6 C 0.38 8.32 5.50 -83.54 -0.46 7.86 16 7 C -0.34 -7.30 7.77 -38.32 -0.30 -7.60 16 8 H 0.11 2.42 7.00 -52.49 -0.37 2.05 16 9 C 0.07 1.44 4.84 -17.20 -0.08 1.36 16 10 N -0.72 -14.26 10.94 55.60 0.61 -13.65 16 11 Si 0.93 15.64 29.58 -169.99 -5.03 10.61 16 12 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 13 H -0.27 -4.49 7.11 56.52 0.40 -4.09 16 14 H -0.25 -4.25 7.11 56.52 0.40 -3.84 16 15 N -0.63 -13.00 3.32 -9.60 -0.03 -13.03 16 16 C 0.47 9.23 5.88 -154.63 -0.91 8.32 16 17 N -0.51 -9.69 8.65 -12.25 -0.11 -9.80 16 18 C 0.16 2.49 11.17 -17.55 -0.20 2.29 16 19 C -0.24 -3.29 10.10 -39.44 -0.40 -3.69 16 20 C -0.02 -0.25 10.10 -39.15 -0.40 -0.65 16 21 C -0.01 -0.12 5.31 -83.20 -0.44 -0.57 16 22 N -0.53 -8.26 1.85 -61.14 -0.11 -8.37 16 23 C 0.53 7.99 8.00 -12.39 -0.10 7.89 16 24 O -0.44 -8.26 17.80 5.45 0.10 -8.17 16 25 C -0.14 -1.37 11.16 -36.97 -0.41 -1.78 16 26 C -0.14 -1.30 11.16 -36.97 -0.41 -1.71 16 27 C 0.53 7.61 8.00 -12.39 -0.10 7.52 16 28 O -0.43 -7.26 17.80 5.45 0.10 -7.17 16 29 H 0.30 5.79 8.29 -40.82 -0.34 5.45 16 30 H 0.40 8.20 8.05 -40.82 -0.33 7.87 16 31 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -30.07 345.53 -5.13 -35.20 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -1.94 Total: 8.24 kcal Atomic # 6 Polarization: 31.23 SS G_CDS: -5.47 Total: 25.77 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: 1.91 Total: -69.69 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.19 Total: -15.33 kcal Atomic # 14 Polarization: 15.64 SS G_CDS: -5.03 Total: 10.61 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.07 -5.13 -35.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.015 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds