Wall clock time and date at job start Tue Mar 31 2020 19:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43201 * 119.99605 * 87.52096 * 3 2 1 5 5 N 3.51030 * 140.68594 * 87.51873 * 2 1 3 6 6 C 1.41148 * 120.00246 * 267.52104 * 3 2 1 7 7 C 1.38993 * 119.99740 * 5.38123 * 6 3 2 8 8 H 1.08000 * 119.99920 * 339.48435 * 7 6 3 9 9 C 1.40840 * 119.99653 * 159.48542 * 7 6 3 10 10 N 1.30333 * 120.00231 * 350.66280 * 9 7 6 11 11 Si 1.86807 * 119.99732 * 170.66181 * 9 7 6 12 12 H 1.48492 * 109.46977 * 90.00181 * 11 9 7 13 13 H 1.48501 * 109.46690 * 210.00258 * 11 9 7 14 14 H 1.48503 * 109.46800 * 329.99627 * 11 9 7 15 15 N 1.38340 * 120.00060 * 185.38014 * 6 3 2 16 16 C 1.39291 * 120.00076 * 120.19689 * 15 6 3 17 17 N 1.32310 * 119.73736 * 358.35163 * 16 15 6 18 18 C 1.31980 * 121.69064 * 180.02562 * 17 16 15 19 19 C 1.38082 * 120.98153 * 0.02562 * 18 17 16 20 20 C 1.38775 * 119.38311 * 359.70567 * 19 18 17 21 21 C 1.38878 * 118.43785 * 0.53596 * 20 19 18 22 22 N 1.40349 * 120.50679 * 179.76033 * 21 20 19 23 23 C 1.34510 * 125.20404 * 269.41503 * 22 21 20 24 24 O 1.21400 * 125.79388 * 0.24360 * 23 22 21 25 25 C 1.47973 * 108.41257 * 180.26540 * 23 22 21 26 26 C 1.34349 * 106.79231 * 359.97438 * 25 23 22 27 27 C 1.34521 * 125.20089 * 89.72327 * 22 21 20 28 28 O 1.21409 * 125.79313 * 359.75205 * 27 22 21 29 29 H 0.97001 * 120.00055 * 185.07295 * 10 9 7 30 30 H 0.97002 * 119.99697 * 300.19353 * 15 6 3 31 31 H 1.07993 * 119.51000 * 179.97438 * 18 17 16 32 32 H 1.08002 * 120.30655 * 179.97438 * 19 18 17 33 33 H 1.07995 * 120.78158 * 180.27331 * 20 19 18 34 34 H 1.08007 * 126.59994 * 179.97438 * 25 23 22 35 35 H 1.07993 * 126.60870 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2839 -0.0527 -1.2390 5 7 3.8519 -0.0963 -2.2219 6 6 3.2738 0.0538 1.2212 7 6 2.5834 -0.0073 2.4260 8 1 1.5315 0.2353 2.4586 9 6 3.2557 -0.3856 3.6044 10 7 4.4710 -0.8521 3.5402 11 14 2.4055 -0.2186 5.2594 12 1 1.6748 -1.4736 5.5692 13 1 3.4200 0.0367 6.3134 14 1 1.4462 0.9139 5.2109 15 7 4.6525 0.1668 1.2189 16 6 5.2627 1.2606 1.8285 17 7 4.5177 2.2050 2.3795 18 6 5.0551 3.2578 2.9666 19 6 6.4255 3.4150 3.0280 20 6 7.2477 2.4470 2.4686 21 6 6.6558 1.3521 1.8525 22 7 7.4459 0.3501 1.2683 23 6 7.8585 0.3357 -0.0119 24 8 7.6145 1.1833 -0.8461 25 6 8.6599 -0.8887 -0.2310 26 6 8.6867 -1.5495 0.9385 27 6 7.9014 -0.7460 1.9014 28 8 7.7022 -1.0279 3.0654 29 1 4.9072 -1.1812 4.3416 30 1 5.1943 -0.5158 0.7929 31 1 4.4134 4.0078 3.4047 32 1 6.8536 4.2811 3.5108 33 1 8.3225 2.5450 2.5077 34 1 9.1324 -1.1927 -1.1534 35 1 9.1844 -2.4871 1.1372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:28 Heat of formation + Delta-G solvation = 78.415605 kcal Electronic energy + Delta-G solvation = -28368.942592 eV Core-core repulsion = 24333.824696 eV Total energy + Delta-G solvation = -4035.117897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.080 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.46415 -41.03351 -39.66591 -38.80827 -37.23792 -36.99654 -36.55107 -35.26998 -34.85690 -32.94015 -31.74300 -29.63709 -28.78271 -26.31313 -25.06859 -24.51481 -22.76211 -22.48488 -21.41773 -20.70612 -19.29642 -18.97141 -18.75083 -17.81690 -17.68748 -17.07288 -16.94159 -16.68719 -16.23742 -15.63460 -15.32627 -15.07497 -15.00268 -14.91039 -14.85411 -14.60372 -14.38457 -14.18140 -13.90345 -13.47482 -13.40709 -13.38436 -13.22678 -13.13587 -12.72561 -12.70344 -12.14003 -12.07216 -11.65320 -11.52357 -11.45846 -11.34618 -11.10328 -10.63437 -10.18139 -9.82330 -9.23863 -8.48922 -7.10800 -0.87899 0.13191 0.35668 0.83634 1.33470 1.34636 1.47429 1.52427 1.62644 1.75893 2.00651 2.05954 2.17168 2.20223 2.54506 2.67641 2.85035 3.13960 3.18602 3.39554 3.68838 3.82703 3.94852 4.06622 4.29531 4.32653 4.43181 4.58747 4.63029 4.66537 4.86816 4.88155 5.01892 5.22879 5.37802 5.53745 5.58476 5.78149 5.98255 6.16049 6.19812 6.42146 6.63888 6.71741 7.15829 7.29632 7.36882 7.71112 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.006448 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.289717 B = 4341.389388 C = 5454.999848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C 0.332 3.668 3 C -0.336 4.336 4 C 0.310 3.690 5 N -0.556 5.556 6 C 0.371 3.629 7 C -0.337 4.337 8 H 0.102 0.898 9 C 0.049 3.951 10 N -0.715 5.715 11 Si 0.978 3.022 12 H -0.255 1.255 13 H -0.261 1.261 14 H -0.252 1.252 15 N -0.636 5.636 16 C 0.442 3.558 17 N -0.539 5.539 18 C 0.147 3.853 19 C -0.223 4.223 20 C -0.027 4.027 21 C -0.024 4.024 22 N -0.537 5.537 23 C 0.521 3.479 24 O -0.491 6.491 25 C -0.127 4.127 26 C -0.111 4.111 27 C 0.525 3.475 28 O -0.462 6.462 29 H 0.309 0.691 30 H 0.397 0.603 31 H 0.188 0.812 32 H 0.174 0.826 33 H 0.152 0.848 34 H 0.222 0.778 35 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.735 0.569 8.300 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.241 5.241 2 C 0.026 3.974 3 C -0.355 4.355 4 C 0.005 3.995 5 N -0.240 5.240 6 C 0.267 3.733 7 C -0.363 4.363 8 H 0.120 0.880 9 C -0.183 4.183 10 N -0.333 5.333 11 Si 0.797 3.203 12 H -0.179 1.179 13 H -0.185 1.185 14 H -0.175 1.175 15 N -0.258 5.258 16 C 0.206 3.794 17 N -0.256 5.256 18 C -0.012 4.012 19 C -0.245 4.245 20 C -0.054 4.054 21 C -0.119 4.119 22 N -0.278 5.278 23 C 0.313 3.687 24 O -0.363 6.363 25 C -0.148 4.148 26 C -0.132 4.132 27 C 0.315 3.685 28 O -0.331 6.331 29 H 0.121 0.879 30 H 0.232 0.768 31 H 0.204 0.796 32 H 0.192 0.808 33 H 0.169 0.831 34 H 0.239 0.761 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.787 0.695 7.075 15.512 hybrid contribution 0.715 -0.087 0.636 0.961 sum 14.502 0.608 7.712 16.437 Atomic orbital electron populations 1.81019 1.12520 1.21208 1.09358 1.24771 0.91386 0.89753 0.91520 1.12960 0.82825 1.53477 0.86272 1.25383 0.92289 0.89955 0.91886 1.81040 1.10187 1.21474 1.11304 1.16649 0.80455 0.85955 0.90261 1.20334 0.97827 1.26527 0.91629 0.88050 1.27052 0.94779 0.91673 1.04757 1.69455 1.10806 1.17853 1.35172 0.85165 0.79353 0.80885 0.74848 1.17899 1.18484 1.17488 1.41142 1.04668 1.22205 1.57791 1.18225 0.86768 0.86661 0.87767 1.67423 1.39637 1.03814 1.14681 1.23225 0.94328 0.92610 0.91009 1.22082 0.93849 1.02169 1.06446 1.21642 1.01456 0.90615 0.91683 1.17798 0.88117 0.94889 1.11136 1.44027 1.48245 1.22459 1.13047 1.20550 0.79303 0.88265 0.80615 1.90802 1.55059 1.43075 1.47405 1.24814 0.96937 0.90824 1.02252 1.24904 0.96311 1.01041 0.90963 1.20332 0.79223 0.80750 0.88181 1.90783 1.54473 1.70777 1.17108 0.87853 0.76756 0.79551 0.80828 0.83059 0.76140 0.75508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.94 18.54 19.00 0.35 -27.59 16 2 C 0.33 16.30 13.90 88.33 1.23 17.53 16 3 C -0.34 -16.09 5.88 -20.07 -0.12 -16.20 16 4 C 0.31 15.33 14.80 88.33 1.31 16.64 16 5 N -0.56 -28.18 18.54 19.00 0.35 -27.83 16 6 C 0.37 16.76 5.50 39.01 0.21 16.98 16 7 C -0.34 -14.60 7.77 23.09 0.18 -14.42 16 8 H 0.10 4.52 7.00 -2.91 -0.02 4.50 16 9 C 0.05 1.90 4.84 85.55 0.41 2.31 16 10 N -0.72 -28.12 10.94 21.98 0.24 -27.88 16 11 Si 0.98 31.01 29.58 68.60 2.03 33.04 16 12 H -0.25 -7.90 7.11 99.48 0.71 -7.19 16 13 H -0.26 -7.93 7.11 99.48 0.71 -7.22 16 14 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 15 N -0.64 -26.94 3.32 -184.27 -0.61 -27.55 16 16 C 0.44 17.52 5.88 133.11 0.78 18.30 16 17 N -0.54 -20.64 8.65 -192.65 -1.67 -22.31 16 18 C 0.15 4.25 11.17 84.63 0.95 5.20 16 19 C -0.22 -5.42 10.10 22.36 0.23 -5.20 16 20 C -0.03 -0.77 10.10 22.55 0.23 -0.54 16 21 C -0.02 -0.82 5.31 38.27 0.20 -0.62 16 22 N -0.54 -16.58 1.85 -584.31 -1.08 -17.66 16 23 C 0.52 15.47 8.00 86.87 0.70 16.17 16 24 O -0.49 -18.78 17.80 -3.40 -0.06 -18.84 16 25 C -0.13 -2.14 11.16 23.96 0.27 -1.88 16 26 C -0.11 -1.72 11.16 23.96 0.27 -1.45 16 27 C 0.52 14.29 8.00 86.86 0.70 14.99 16 28 O -0.46 -15.23 17.80 -3.43 -0.06 -15.29 16 29 H 0.31 11.49 8.29 -92.71 -0.77 10.72 16 30 H 0.40 16.77 8.05 -92.71 -0.75 16.02 16 31 H 0.19 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.22 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.23 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -68.96 345.53 7.50 -61.46 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.47 Total: 22.63 kcal Atomic # 6 Polarization: 60.27 SS G_CDS: 7.53 Total: 67.80 kcal Atomic # 7 Polarization: -148.40 SS G_CDS: -2.41 Total: -150.81 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.12 Total: -34.13 kcal Atomic # 14 Polarization: 31.01 SS G_CDS: 2.03 Total: 33.04 kcal Total: -68.96 7.50 -61.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.877 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds