Wall clock time and date at job start Tue Mar 31 2020 18:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35947 * 117.00354 * 2 1 4 4 C 1.38817 * 120.39907 * 359.97438 * 3 2 1 5 5 C 1.38606 * 118.54987 * 180.02562 * 4 3 2 6 6 C 1.39132 * 119.28168 * 359.97438 * 5 4 3 7 7 C 1.48292 * 119.62760 * 179.97438 * 6 5 4 8 8 C 1.39365 * 119.72686 * 179.97438 * 7 6 5 9 9 C 1.38402 * 119.06203 * 179.97438 * 8 7 6 10 10 C 1.38775 * 118.51307 * 359.97438 * 9 8 7 11 11 C 1.38270 * 119.37210 * 0.02562 * 10 9 8 12 12 N 1.31737 * 120.89707 * 359.74179 * 11 10 9 13 13 N 1.32849 * 120.74007 * 359.74255 * 6 5 4 14 14 C 1.32115 * 121.57306 * 0.52672 * 13 6 5 15 15 N 1.39212 * 119.67327 * 179.75485 * 14 13 6 16 16 S 1.65597 * 119.99966 * 0.02562 * 15 14 13 17 17 O 1.42096 * 106.40195 * 178.26449 * 16 15 14 18 18 O 1.42108 * 106.40105 * 311.18505 * 16 15 14 19 19 C 1.76199 * 107.22117 * 64.72206 * 16 15 14 20 20 H 1.08002 * 120.00179 * 0.02562 * 19 16 15 21 21 C 1.37873 * 120.00184 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00216 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 120.00092 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.47078 * 60.00273 * 23 21 19 25 25 H 1.48501 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47250 * 300.00279 * 23 21 19 27 27 H 1.09001 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46616 * 300.00318 * 1 2 3 29 29 H 1.08996 * 109.46896 * 59.99530 * 1 2 3 30 30 H 1.07999 * 120.72390 * 0.04046 * 4 3 2 31 31 H 1.08000 * 120.35973 * 180.02562 * 5 4 3 32 32 H 1.07996 * 120.46648 * 359.97438 * 8 7 6 33 33 H 1.08004 * 120.73718 * 180.02562 * 9 8 7 34 34 H 1.08008 * 120.31046 * 180.02562 * 10 9 8 35 35 H 1.08006 * 119.55136 * 179.97438 * 11 10 9 36 36 H 0.97001 * 119.99749 * 179.71918 * 15 14 13 37 37 H 0.96998 * 120.00473 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2985 2.3808 -0.0005 5 6 1.9673 3.5948 -0.0011 6 6 3.3586 3.6052 -0.0005 7 6 4.0820 4.8997 -0.0016 8 6 5.4756 4.9125 -0.0005 9 6 6.1367 6.1284 -0.0021 10 6 5.3819 7.2929 -0.0054 11 6 4.0019 7.2065 -0.0063 12 7 3.3973 6.0361 -0.0093 13 7 4.0462 2.4685 0.0057 14 6 3.4411 1.2940 0.0011 15 7 4.2008 0.1274 0.0027 16 16 5.8544 0.2161 0.0109 17 8 6.3278 -1.1230 0.0521 18 8 6.2119 1.1359 -1.0116 19 6 6.3293 0.9589 1.5365 20 1 5.5753 1.2560 2.2503 21 6 7.6636 1.1610 1.8189 22 7 8.5819 0.7988 0.9500 23 14 8.1671 1.9492 3.4360 24 1 7.6838 1.1144 4.5652 25 1 9.6472 2.0533 3.4962 26 1 7.5705 3.3057 3.5324 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.2191 2.3454 -0.0003 31 1 1.4145 4.5225 -0.0011 32 1 6.0318 3.9867 0.0016 33 1 7.2160 6.1699 -0.0017 34 1 5.8678 8.2575 -0.0071 35 1 3.4115 8.1110 -0.0084 36 1 3.7614 -0.7374 0.0035 37 1 9.5206 0.9413 1.1485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:53 Heat of formation + Delta-G solvation = -72.839784 kcal Electronic energy + Delta-G solvation = -26751.729790 eV Core-core repulsion = 22813.204168 eV Total energy + Delta-G solvation = -3938.525622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94105 -40.80947 -39.11202 -37.43616 -36.38614 -36.16943 -35.15819 -33.48754 -33.28399 -32.13779 -29.94615 -28.31116 -28.17377 -25.15017 -24.87422 -23.60548 -22.83859 -21.01967 -19.77840 -19.54368 -18.77150 -18.40455 -17.67496 -17.51896 -16.95134 -16.81855 -16.53114 -16.41503 -16.02887 -15.65015 -15.41012 -15.23648 -15.07946 -14.56325 -14.47710 -14.10517 -14.01322 -13.48042 -13.38184 -13.03857 -12.89698 -12.62135 -12.57400 -12.44950 -12.41239 -12.35553 -12.34523 -12.30884 -11.24550 -10.96215 -10.82569 -10.81636 -10.56460 -10.31132 -10.09328 -8.82123 -8.67077 -7.43143 -0.49915 0.15317 0.26503 0.37610 0.69126 1.28395 1.31462 1.43732 2.13255 2.16595 2.36507 2.56974 2.58550 2.99470 3.11721 3.58472 3.61678 3.78879 3.83885 3.88653 4.05645 4.21496 4.26815 4.32833 4.43625 4.47952 4.48450 4.55780 4.78849 4.79993 4.97587 4.99908 5.08602 5.22213 5.28330 5.31924 5.47422 5.78512 5.83507 5.89618 6.32420 6.78402 6.87403 7.02028 8.22539 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.007952 B = 0.007127 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.481154 B = 3927.631809 C = 6584.417545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.056 3.944 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.137 3.863 7 C 0.150 3.850 8 C -0.158 4.158 9 C -0.090 4.090 10 C -0.154 4.154 11 C 0.095 3.905 12 N -0.479 5.479 13 N -0.494 5.494 14 C 0.345 3.655 15 N -1.035 6.035 16 S 2.714 3.286 17 O -1.036 7.036 18 O -1.010 7.010 19 C -1.008 5.008 20 H 0.105 0.895 21 C 0.080 3.920 22 N -0.891 5.891 23 Si 0.981 3.019 24 H -0.253 1.253 25 H -0.256 1.256 26 H -0.256 1.256 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.195 0.805 31 H 0.175 0.825 32 H 0.115 0.885 33 H 0.148 0.852 34 H 0.178 0.822 35 H 0.203 0.797 36 H 0.434 0.566 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.791 11.381 0.898 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.003 3.997 4 C -0.152 4.152 5 C -0.138 4.138 6 C 0.001 3.999 7 C 0.015 3.985 8 C -0.179 4.179 9 C -0.115 4.115 10 C -0.173 4.173 11 C -0.064 4.064 12 N -0.190 5.190 13 N -0.210 5.210 14 C 0.109 3.891 15 N -0.783 5.783 16 S 2.816 3.184 17 O -1.027 7.027 18 O -1.000 7.000 19 C -1.143 5.143 20 H 0.123 0.877 21 C -0.133 4.133 22 N -0.523 5.523 23 Si 0.799 3.201 24 H -0.177 1.177 25 H -0.180 1.180 26 H -0.180 1.180 27 H 0.139 0.861 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.212 0.788 31 H 0.192 0.808 32 H 0.133 0.867 33 H 0.165 0.835 34 H 0.195 0.805 35 H 0.220 0.780 36 H 0.271 0.729 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.863 10.886 0.075 19.239 hybrid contribution 0.538 -0.447 0.982 1.205 sum -15.325 10.439 1.057 18.573 Atomic orbital electron populations 1.23521 0.75305 1.06183 1.03060 1.86036 1.24382 1.24912 1.88676 1.19519 0.90063 0.87475 1.02607 1.21892 1.02463 0.89306 1.01564 1.22052 0.92475 1.00203 0.99109 1.19139 0.91397 0.88552 1.00781 1.19182 0.89939 0.90728 0.98660 1.22374 0.95796 1.00373 0.99343 1.21901 1.01936 0.91894 0.95800 1.22630 0.95478 0.99901 0.99319 1.23435 0.93155 0.95386 0.94411 1.67452 1.40896 0.97874 1.12745 1.66917 1.40763 0.97233 1.16116 1.17438 0.86569 0.85745 0.99397 1.53495 1.27334 1.11457 1.86017 1.00286 0.69328 0.72386 0.76447 1.93341 1.78203 1.41284 1.89854 1.93327 1.80554 1.65216 1.60908 1.30413 1.00732 1.57295 1.25822 0.87688 1.25812 0.94494 0.91041 1.01996 1.69966 1.03805 1.41218 1.37328 0.85308 0.78446 0.79558 0.76765 1.17662 1.18009 1.17982 0.86053 0.90732 0.90751 0.78827 0.80761 0.86720 0.83462 0.80459 0.78024 0.72899 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.83 113.37 1.11 1.30 16 2 O -0.33 -8.72 9.73 -92.95 -0.90 -9.63 16 3 C 0.06 1.80 6.73 22.77 0.15 1.95 16 4 C -0.13 -3.07 9.12 22.50 0.21 -2.87 16 5 C -0.12 -3.32 9.60 22.57 0.22 -3.10 16 6 C 0.14 5.30 6.72 41.88 0.28 5.59 16 7 C 0.15 5.57 6.72 41.96 0.28 5.85 16 8 C -0.16 -6.32 9.61 22.58 0.22 -6.11 16 9 C -0.09 -2.68 10.16 22.44 0.23 -2.45 16 10 C -0.15 -3.26 10.11 22.41 0.23 -3.03 16 11 C 0.10 2.04 11.17 84.71 0.95 2.99 16 12 N -0.48 -14.06 9.39 -184.86 -1.74 -15.80 16 13 N -0.49 -22.83 7.36 -181.83 -1.34 -24.17 16 14 C 0.35 14.76 7.35 133.22 0.98 15.74 16 15 N -1.04 -47.65 5.85 -55.08 -0.32 -47.98 16 16 S 2.71 157.41 4.65 -56.49 -0.26 157.14 16 17 O -1.04 -64.98 18.02 -128.00 -2.31 -67.29 16 18 O -1.01 -64.00 16.91 -128.00 -2.16 -66.16 16 19 C -1.01 -58.98 9.31 67.73 0.63 -58.35 16 20 H 0.10 5.83 7.81 -2.91 -0.02 5.80 16 21 C 0.08 4.59 5.46 84.65 0.46 5.05 16 22 N -0.89 -54.34 13.19 21.45 0.28 -54.06 16 23 Si 0.98 43.30 29.54 68.60 2.03 45.32 16 24 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 0.79 7.69 -2.39 -0.02 0.77 16 29 H 0.07 0.78 7.69 -2.39 -0.02 0.76 16 30 H 0.19 2.60 6.42 -2.91 -0.02 2.59 16 31 H 0.18 3.94 7.51 -2.91 -0.02 3.92 16 32 H 0.11 5.71 7.52 -2.91 -0.02 5.69 16 33 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 34 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.43 17.17 8.16 -96.74 -0.79 16.38 16 37 H 0.30 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -88.37 341.30 -0.43 -88.80 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.35 Total: 31.26 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 5.94 Total: -37.46 kcal Atomic # 7 Polarization: -138.89 SS G_CDS: -3.11 Total: -142.00 kcal Atomic # 8 Polarization: -137.70 SS G_CDS: -5.38 Total: -143.08 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 157.41 SS G_CDS: -0.26 Total: 157.14 kcal Total: -88.37 -0.43 -88.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.962 kcal (2) G-P(sol) polarization free energy of solvation -88.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds