Wall clock time and date at job start Tue Mar 31 2020 19:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99677 * 2 1 4 4 H 1.48503 * 109.47249 * 269.99968 * 3 2 1 5 5 H 1.48494 * 109.47186 * 30.00197 * 3 2 1 6 6 H 1.48501 * 109.46814 * 150.00351 * 3 2 1 7 7 C 1.37879 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99858 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99864 * 359.97438 * 7 2 1 10 10 O 1.42111 * 106.40086 * 66.46465 * 9 7 2 11 11 O 1.42094 * 106.40678 * 293.54312 * 9 7 2 12 12 N 1.65597 * 107.21928 * 180.02562 * 9 7 2 13 13 C 1.46504 * 119.99654 * 65.00241 * 12 9 7 14 14 C 1.50697 * 109.46981 * 163.57559 * 13 12 9 15 15 C 1.38041 * 120.06252 * 254.03760 * 14 13 12 16 16 C 1.38299 * 120.12233 * 180.27926 * 15 14 13 17 17 C 1.38347 * 120.24377 * 359.71867 * 16 15 14 18 18 C 1.37996 * 120.12312 * 0.02562 * 17 16 15 19 19 C 1.39322 * 120.06450 * 73.76361 * 14 13 12 20 20 C 1.48384 * 120.12139 * 359.97438 * 19 14 13 21 21 C 1.39349 * 120.09691 * 236.59377 * 20 19 14 22 22 C 1.37973 * 119.90125 * 179.97438 * 21 20 19 23 23 C 1.38554 * 120.09792 * 0.24905 * 22 21 20 24 24 F 1.35100 * 119.90184 * 179.74774 * 23 22 21 25 25 C 1.38547 * 120.18907 * 359.49231 * 23 22 21 26 26 C 1.37970 * 120.09765 * 0.51119 * 25 23 22 27 27 H 0.97006 * 120.00223 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00085 * 245.00493 * 12 9 7 29 29 H 1.08993 * 109.47264 * 43.57240 * 13 12 9 30 30 H 1.09002 * 109.46945 * 283.57352 * 13 12 9 31 31 H 1.08000 * 119.93832 * 359.97276 * 15 14 13 32 32 H 1.07999 * 119.87960 * 179.74154 * 16 15 14 33 33 H 1.08001 * 119.93569 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.05980 * 179.97438 * 18 17 16 35 35 H 1.07990 * 120.05075 * 359.97438 * 21 20 19 36 36 H 1.08001 * 119.95335 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.95362 * 180.25190 * 25 23 22 38 38 H 1.07997 * 120.05102 * 179.76541 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2502 11 8 0.4518 -2.7956 1.2493 12 7 2.2483 -3.9354 -0.0005 13 6 3.1393 -4.1088 1.1494 14 6 3.7678 -5.4774 1.0959 15 6 3.3461 -6.4663 1.9618 16 6 3.9261 -7.7211 1.9177 17 6 4.9272 -7.9942 1.0027 18 6 5.3529 -7.0147 0.1288 19 6 4.7716 -5.7487 0.1687 20 6 5.2245 -4.6917 -0.7691 21 6 5.1784 -4.9112 -2.1445 22 6 5.6000 -3.9254 -3.0128 23 6 6.0736 -2.7205 -2.5191 24 9 6.4902 -1.7599 -3.3728 25 6 6.1162 -2.4961 -1.1525 26 6 5.6966 -3.4764 -0.2770 27 1 -0.4851 0.8401 -0.0004 28 1 2.3172 -4.5324 -0.7619 29 1 2.5666 -4.0078 2.0713 30 1 3.9203 -3.3490 1.1217 31 1 2.5653 -6.2584 2.6783 32 1 3.5961 -8.4906 2.5997 33 1 5.3764 -8.9759 0.9723 34 1 6.1347 -7.2289 -0.5847 35 1 4.8131 -5.8514 -2.5301 36 1 5.5649 -4.0947 -4.0789 37 1 6.4823 -1.5540 -0.7720 38 1 5.7337 -3.3021 0.7882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:06 Heat of formation + Delta-G solvation = -90.121085 kcal Electronic energy + Delta-G solvation = -26520.837237 eV Core-core repulsion = 22561.642280 eV Total energy + Delta-G solvation = -3959.194957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.77596 -40.05630 -38.16532 -35.26386 -34.73488 -33.92513 -33.05847 -32.36374 -31.18775 -30.66356 -28.64029 -26.11129 -25.40608 -23.43131 -22.80350 -21.65038 -20.73536 -18.98297 -17.69511 -17.42202 -17.00540 -16.25733 -16.24481 -15.74560 -15.49660 -15.16635 -14.98727 -14.81455 -14.45695 -14.00645 -13.90374 -13.57677 -13.35500 -13.25724 -13.03001 -12.59908 -12.52190 -12.35567 -12.07274 -11.95612 -11.29002 -11.20599 -11.10540 -11.08735 -10.91857 -10.59571 -10.37355 -10.26788 -10.17021 -9.22661 -9.14420 -9.11608 -8.95684 -8.81939 -8.45907 -8.17972 -6.68022 -5.29211 0.85313 1.30259 1.30871 1.52534 2.40326 3.08043 3.15040 3.20282 3.55248 3.77425 4.08919 4.33863 4.53156 4.66413 4.76921 4.79864 4.88872 4.90278 4.95066 4.98860 5.25747 5.32983 5.39376 5.52629 5.68113 5.77073 5.87817 5.92712 5.94305 6.05264 6.08695 6.18089 6.26680 6.32084 6.42851 6.45558 6.51904 6.68712 6.84013 6.91447 6.96155 7.34363 7.91078 8.00562 8.91519 10.26226 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.005634 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.993381 B = 4968.756488 C = 6904.405678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.134 3.866 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.016 5.016 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.006 7.006 11 O -1.008 7.008 12 N -1.129 6.129 13 C 0.160 3.840 14 C -0.072 4.072 15 C -0.103 4.103 16 C -0.119 4.119 17 C -0.121 4.121 18 C -0.108 4.108 19 C -0.037 4.037 20 C -0.053 4.053 21 C -0.079 4.079 22 C -0.151 4.151 23 C 0.101 3.899 24 F -0.142 7.142 25 C -0.146 4.146 26 C -0.071 4.071 27 H 0.290 0.710 28 H 0.402 0.598 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.072 -12.106 0.510 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.083 4.083 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.150 5.150 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.997 6.997 11 O -0.998 6.998 12 N -0.883 5.883 13 C 0.033 3.967 14 C -0.074 4.074 15 C -0.121 4.121 16 C -0.137 4.137 17 C -0.140 4.140 18 C -0.126 4.126 19 C -0.038 4.038 20 C -0.054 4.054 21 C -0.097 4.097 22 C -0.170 4.170 23 C 0.081 3.919 24 F -0.120 7.120 25 C -0.165 4.165 26 C -0.089 4.089 27 H 0.101 0.899 28 H 0.232 0.768 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.938 -11.982 0.659 17.647 hybrid contribution 1.026 1.178 -0.539 1.653 sum 13.964 -10.804 0.120 17.656 Atomic orbital electron populations 1.69899 1.06774 1.30651 1.40249 1.24717 0.94404 1.00713 0.88515 0.86216 0.80197 0.80275 0.79207 1.19210 1.20011 1.18641 1.30509 1.06033 1.11717 1.66697 0.87976 1.00416 0.72088 0.73267 0.72816 1.93377 1.73068 1.87623 1.45602 1.93350 1.72903 1.87540 1.45993 1.55965 1.55294 1.51076 1.25954 1.20119 0.93555 0.92589 0.90388 1.20141 0.95560 0.96388 0.95293 1.21143 0.99479 0.92660 0.98866 1.21199 0.96779 0.96808 0.98909 1.21055 0.97750 0.99021 0.96140 1.21146 0.99891 0.92172 0.99374 1.18608 0.96387 0.93126 0.95636 1.18714 1.00065 0.93886 0.92705 1.20992 0.98015 0.98947 0.91726 1.21028 1.02104 0.92871 1.00990 1.17785 0.99838 0.86661 0.87581 1.91492 1.87819 1.62532 1.70168 1.21082 1.03049 1.00894 0.91428 1.21073 0.96150 0.91618 1.00034 0.89943 0.76774 0.89768 0.91033 0.85266 0.86007 0.86083 0.85916 0.84984 0.84708 0.84533 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.93 13.19 55.43 0.73 -24.20 16 2 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 3 Si 0.92 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -1.02 -27.57 9.72 30.60 0.30 -27.27 16 8 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 9 S 2.71 71.61 5.02 -107.50 -0.54 71.07 16 10 O -1.01 -29.73 18.02 -57.17 -1.03 -30.76 16 11 O -1.01 -29.16 17.47 -57.17 -1.00 -30.16 16 12 N -1.13 -22.30 5.82 -11.66 -0.07 -22.36 16 13 C 0.16 2.67 5.66 -5.19 -0.03 2.64 16 14 C -0.07 -1.00 5.28 -104.29 -0.55 -1.55 16 15 C -0.10 -1.26 9.66 -39.63 -0.38 -1.64 16 16 C -0.12 -1.21 10.04 -39.52 -0.40 -1.61 16 17 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 18 C -0.11 -1.13 9.63 -39.25 -0.38 -1.50 16 19 C -0.04 -0.46 5.39 -104.90 -0.57 -1.03 16 20 C -0.05 -0.69 4.77 -104.89 -0.50 -1.19 16 21 C -0.08 -0.96 9.63 -39.27 -0.38 -1.34 16 22 C -0.15 -1.93 10.01 -39.56 -0.40 -2.33 16 23 C 0.10 1.44 7.30 -39.35 -0.29 1.16 16 24 F -0.14 -2.13 17.26 2.25 0.04 -2.09 16 25 C -0.15 -2.02 10.01 -39.57 -0.40 -2.41 16 26 C -0.07 -0.94 7.97 -39.26 -0.31 -1.25 16 27 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.40 7.24 8.65 -34.47 -0.30 6.94 16 29 H 0.08 1.43 7.52 -51.93 -0.39 1.04 16 30 H 0.07 1.13 5.15 -51.93 -0.27 0.86 16 31 H 0.13 1.49 7.99 -52.49 -0.42 1.07 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.14 1.61 6.97 -52.49 -0.37 1.24 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -35.48 348.97 -10.22 -45.71 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.82 Total: 9.19 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: -4.77 Total: -37.25 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.66 Total: -46.56 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -2.03 Total: -60.93 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 71.61 SS G_CDS: -0.54 Total: 71.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.48 -10.22 -45.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.415 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds