Wall clock time and date at job start Tue Mar 31 2020 19:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99677 * 2 1 4 4 H 1.48503 * 109.47249 * 269.99968 * 3 2 1 5 5 H 1.48494 * 109.47186 * 30.00197 * 3 2 1 6 6 H 1.48501 * 109.46814 * 150.00351 * 3 2 1 7 7 C 1.37879 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99858 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99864 * 359.97438 * 7 2 1 10 10 O 1.42111 * 106.40086 * 66.46465 * 9 7 2 11 11 O 1.42094 * 106.40678 * 293.54312 * 9 7 2 12 12 N 1.65597 * 107.21928 * 180.02562 * 9 7 2 13 13 C 1.46504 * 119.99654 * 65.00241 * 12 9 7 14 14 C 1.50697 * 109.46981 * 163.57559 * 13 12 9 15 15 C 1.38041 * 120.06252 * 254.03760 * 14 13 12 16 16 C 1.38299 * 120.12233 * 180.27926 * 15 14 13 17 17 C 1.38347 * 120.24377 * 359.71867 * 16 15 14 18 18 C 1.37996 * 120.12312 * 0.02562 * 17 16 15 19 19 C 1.39322 * 120.06450 * 73.76361 * 14 13 12 20 20 C 1.48384 * 120.12139 * 359.97438 * 19 14 13 21 21 C 1.39349 * 120.09691 * 236.59377 * 20 19 14 22 22 C 1.37973 * 119.90125 * 179.97438 * 21 20 19 23 23 C 1.38554 * 120.09792 * 0.24905 * 22 21 20 24 24 F 1.35100 * 119.90184 * 179.74774 * 23 22 21 25 25 C 1.38547 * 120.18907 * 359.49231 * 23 22 21 26 26 C 1.37970 * 120.09765 * 0.51119 * 25 23 22 27 27 H 0.97006 * 120.00223 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00085 * 245.00493 * 12 9 7 29 29 H 1.08993 * 109.47264 * 43.57240 * 13 12 9 30 30 H 1.09002 * 109.46945 * 283.57352 * 13 12 9 31 31 H 1.08000 * 119.93832 * 359.97276 * 15 14 13 32 32 H 1.07999 * 119.87960 * 179.74154 * 16 15 14 33 33 H 1.08001 * 119.93569 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.05980 * 179.97438 * 18 17 16 35 35 H 1.07990 * 120.05075 * 359.97438 * 21 20 19 36 36 H 1.08001 * 119.95335 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.95362 * 180.25190 * 25 23 22 38 38 H 1.07997 * 120.05102 * 179.76541 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2502 11 8 0.4518 -2.7956 1.2493 12 7 2.2483 -3.9354 -0.0005 13 6 3.1393 -4.1088 1.1494 14 6 3.7678 -5.4774 1.0959 15 6 3.3461 -6.4663 1.9618 16 6 3.9261 -7.7211 1.9177 17 6 4.9272 -7.9942 1.0027 18 6 5.3529 -7.0147 0.1288 19 6 4.7716 -5.7487 0.1687 20 6 5.2245 -4.6917 -0.7691 21 6 5.1784 -4.9112 -2.1445 22 6 5.6000 -3.9254 -3.0128 23 6 6.0736 -2.7205 -2.5191 24 9 6.4902 -1.7599 -3.3728 25 6 6.1162 -2.4961 -1.1525 26 6 5.6966 -3.4764 -0.2770 27 1 -0.4851 0.8401 -0.0004 28 1 2.3172 -4.5324 -0.7619 29 1 2.5666 -4.0078 2.0713 30 1 3.9203 -3.3490 1.1217 31 1 2.5653 -6.2584 2.6783 32 1 3.5961 -8.4906 2.5997 33 1 5.3764 -8.9759 0.9723 34 1 6.1347 -7.2289 -0.5847 35 1 4.8131 -5.8514 -2.5301 36 1 5.5649 -4.0947 -4.0789 37 1 6.4823 -1.5540 -0.7720 38 1 5.7337 -3.3021 0.7882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:05 Heat of formation + Delta-G solvation = -114.028928 kcal Electronic energy + Delta-G solvation = -26521.873959 eV Core-core repulsion = 22561.642280 eV Total energy + Delta-G solvation = -3960.231679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.88087 -41.00951 -39.11056 -37.41630 -36.18407 -36.11813 -35.15496 -33.31922 -32.22285 -31.71639 -29.59143 -28.24691 -26.63505 -24.36189 -23.81817 -22.62763 -21.70058 -21.00712 -19.34544 -18.73208 -18.33815 -17.86733 -17.30921 -17.21771 -16.74093 -16.59363 -16.24364 -16.13265 -15.84286 -15.42565 -15.31857 -14.81320 -14.55063 -14.33153 -14.18481 -14.00352 -13.74621 -13.48994 -13.37425 -13.23874 -13.06249 -13.02321 -12.58935 -12.51779 -12.42922 -12.31321 -12.02449 -11.87288 -11.79195 -11.25268 -11.01478 -10.22974 -10.05984 -9.99560 -9.74730 -9.15471 -8.74904 -7.46313 -0.12010 0.22036 0.31119 0.58549 0.63017 1.32619 1.33795 1.48574 2.20147 2.57919 2.59053 2.81853 3.13453 3.32004 3.58149 3.69055 3.79475 3.83231 3.95469 4.02068 4.25556 4.30952 4.41118 4.45008 4.52561 4.56909 4.64135 4.80867 4.87386 4.97191 5.01434 5.09938 5.17280 5.18567 5.30266 5.30868 5.41604 5.58339 5.63283 5.72740 5.91826 5.93637 6.09886 6.34039 6.79778 8.21669 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.005634 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.993381 B = 4968.756488 C = 6904.405678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.244 1.244 7 C -1.031 5.031 8 H 0.120 0.880 9 S 2.720 3.280 10 O -1.047 7.047 11 O -1.043 7.043 12 N -1.112 6.112 13 C 0.155 3.845 14 C -0.091 4.091 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.105 4.105 19 C -0.043 4.043 20 C -0.057 4.057 21 C -0.080 4.080 22 C -0.154 4.154 23 C 0.075 3.925 24 F -0.151 7.151 25 C -0.158 4.158 26 C -0.083 4.083 27 H 0.298 0.702 28 H 0.411 0.589 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.225 -13.574 0.654 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.167 1.167 7 C -1.164 5.164 8 H 0.139 0.861 9 S 2.821 3.179 10 O -1.037 7.037 11 O -1.033 7.033 12 N -0.871 5.871 13 C 0.029 3.971 14 C -0.093 4.093 15 C -0.135 4.135 16 C -0.134 4.134 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.044 4.044 20 C -0.057 4.057 21 C -0.098 4.098 22 C -0.172 4.172 23 C 0.056 3.944 24 F -0.130 7.130 25 C -0.177 4.177 26 C -0.101 4.101 27 H 0.108 0.892 28 H 0.244 0.756 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.165 0.835 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.087 -13.475 0.805 20.245 hybrid contribution 0.398 1.458 -0.546 1.607 sum 15.486 -12.017 0.259 19.603 Atomic orbital electron populations 1.69994 1.08738 1.32210 1.41674 1.25934 0.95269 1.05145 0.87612 0.85228 0.79490 0.75261 0.79871 1.18417 1.18670 1.16653 1.30818 1.07074 1.12220 1.66336 0.86145 0.99869 0.72584 0.74015 0.71441 1.93311 1.74963 1.88439 1.46981 1.93298 1.74565 1.88271 1.47129 1.55338 1.54733 1.49546 1.27435 1.20283 0.92994 0.95354 0.88432 1.19875 0.97004 0.95048 0.97329 1.21270 0.99921 0.93463 0.98839 1.21511 0.96368 0.96277 0.99236 1.21471 0.96670 1.00123 0.94662 1.21425 0.99881 0.91225 0.99768 1.18627 0.96450 0.93977 0.95357 1.18906 0.99568 0.93920 0.93300 1.21291 0.97411 0.99725 0.91385 1.21313 1.01332 0.92348 1.02216 1.18084 1.01165 0.87302 0.87845 1.91460 1.88107 1.62992 1.70414 1.21266 1.03350 1.01509 0.91539 1.21259 0.96468 0.91901 1.00489 0.89198 0.75593 0.90883 0.90344 0.85482 0.83450 0.82786 0.83723 0.82612 0.82875 0.83871 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.80 13.19 21.45 0.28 -53.52 16 2 C 0.07 4.09 5.46 84.65 0.46 4.55 16 3 Si 0.98 41.64 29.54 68.60 2.03 43.67 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.24 -9.49 7.11 99.48 0.71 -8.78 16 7 C -1.03 -56.40 9.72 67.73 0.66 -55.74 16 8 H 0.12 5.91 7.81 -2.91 -0.02 5.89 16 9 S 2.72 147.18 5.02 -56.49 -0.28 146.90 16 10 O -1.05 -63.74 18.02 -128.00 -2.31 -66.04 16 11 O -1.04 -62.38 17.47 -128.00 -2.24 -64.62 16 12 N -1.11 -44.36 5.82 -190.79 -1.11 -45.47 16 13 C 0.15 5.17 5.66 85.63 0.48 5.66 16 14 C -0.09 -2.40 5.28 -19.65 -0.10 -2.51 16 15 C -0.12 -2.68 9.66 22.24 0.21 -2.46 16 16 C -0.12 -1.99 10.04 22.31 0.22 -1.76 16 17 C -0.11 -1.65 10.03 22.24 0.22 -1.43 16 18 C -0.11 -1.82 9.63 22.48 0.22 -1.60 16 19 C -0.04 -0.99 5.39 -20.04 -0.11 -1.10 16 20 C -0.06 -1.38 4.77 -20.04 -0.10 -1.48 16 21 C -0.08 -1.80 9.63 22.47 0.22 -1.59 16 22 C -0.15 -3.72 10.01 22.28 0.22 -3.50 16 23 C 0.08 2.12 7.30 22.42 0.16 2.28 16 24 F -0.15 -4.53 17.26 44.97 0.78 -3.75 16 25 C -0.16 -4.30 10.01 22.28 0.22 -4.08 16 26 C -0.08 -2.15 7.97 22.48 0.18 -1.97 16 27 H 0.30 16.13 8.31 -92.70 -0.77 15.36 16 28 H 0.41 14.82 8.65 -96.75 -0.84 13.98 16 29 H 0.07 2.57 7.52 -2.39 -0.02 2.55 16 30 H 0.08 2.48 5.15 -2.39 -0.01 2.47 16 31 H 0.13 2.88 7.99 -2.91 -0.02 2.86 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.16 2.67 8.06 -2.92 -0.02 2.64 16 36 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.14 3.33 6.97 -2.91 -0.02 3.31 16 Total: -1.00 -78.22 348.97 0.61 -77.61 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.28 Total: 31.94 kcal Atomic # 6 Polarization: -69.90 SS G_CDS: 3.18 Total: -66.72 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -0.83 Total: -98.98 kcal Atomic # 8 Polarization: -126.12 SS G_CDS: -4.54 Total: -130.66 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 147.18 SS G_CDS: -0.28 Total: 146.90 kcal Total: -78.22 0.61 -77.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.415 kcal (2) G-P(sol) polarization free energy of solvation -78.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds