Wall clock time and date at job start Tue Mar 31 2020 19:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99552 * 2 1 4 4 H 1.48510 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47671 * 300.00276 * 3 2 1 6 6 H 1.48498 * 109.47304 * 60.00962 * 3 2 1 7 7 C 1.37875 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00057 * 179.97438 * 7 2 1 9 9 S 1.76210 * 119.99451 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40244 * 66.46263 * 9 7 2 11 11 O 1.42102 * 106.40260 * 293.54256 * 9 7 2 12 12 N 1.65597 * 107.21396 * 180.02562 * 9 7 2 13 13 C 1.46503 * 120.00214 * 65.00193 * 12 9 7 14 14 C 1.50697 * 109.47291 * 164.99824 * 13 12 9 15 15 C 1.38341 * 119.93900 * 270.27307 * 14 13 12 16 16 C 1.38303 * 120.24475 * 180.27713 * 15 14 13 17 17 C 1.38039 * 120.12211 * 359.44585 * 16 15 14 18 18 C 1.39327 * 119.87549 * 0.27921 * 17 16 15 19 19 C 1.48378 * 120.12227 * 180.02562 * 18 17 16 20 20 C 1.39346 * 120.09566 * 179.72874 * 19 18 17 21 21 C 1.37975 * 119.90358 * 179.74035 * 20 19 18 22 22 C 1.38556 * 120.09482 * 0.53087 * 21 20 19 23 23 F 1.35097 * 119.90275 * 179.74516 * 22 21 20 24 24 C 1.38545 * 120.18888 * 359.71529 * 22 21 20 25 25 C 1.37972 * 120.09778 * 0.03090 * 24 22 21 26 26 C 1.38000 * 119.94042 * 90.00069 * 14 13 12 27 27 H 0.96994 * 120.00289 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99872 * 245.00060 * 12 9 7 29 29 H 1.09000 * 109.47105 * 44.99639 * 13 12 9 30 30 H 1.09005 * 109.47057 * 284.99850 * 13 12 9 31 31 H 1.07998 * 119.87779 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.94275 * 179.72764 * 16 15 14 33 33 H 1.08000 * 120.06299 * 180.29806 * 17 16 15 34 34 H 1.08001 * 120.05038 * 359.96834 * 20 19 18 35 35 H 1.08002 * 119.95341 * 180.22365 * 21 20 19 36 36 H 1.08000 * 119.94927 * 180.02562 * 24 22 21 37 37 H 1.08001 * 120.04883 * 179.97438 * 25 24 22 38 38 H 1.08003 * 120.05748 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9353 -0.0005 13 6 3.1395 -4.1088 1.1493 14 6 3.7949 -5.4638 1.0771 15 6 3.1877 -6.5569 1.6691 16 6 3.7864 -7.8023 1.6116 17 6 4.9886 -7.9632 0.9526 18 6 5.6017 -6.8670 0.3497 19 6 6.8937 -7.0338 -0.3606 20 6 7.5036 -5.9382 -0.9683 21 6 8.7077 -6.0968 -1.6231 22 6 9.3049 -7.3454 -1.6865 23 9 10.4813 -7.4973 -2.3331 24 6 8.6993 -8.4385 -1.0881 25 6 7.4979 -8.2878 -0.4268 26 6 4.9968 -5.6132 0.4157 27 1 -0.4850 0.8400 0.0004 28 1 2.3173 -4.5324 -0.7619 29 1 2.5624 -4.0329 2.0709 30 1 3.9056 -3.3334 1.1355 31 1 2.2447 -6.4364 2.1816 32 1 3.3103 -8.6514 2.0793 33 1 5.4529 -8.9371 0.9041 34 1 7.0364 -4.9655 -0.9236 35 1 9.1829 -5.2474 -2.0913 36 1 9.1685 -9.4099 -1.1396 37 1 7.0263 -9.1405 0.0391 38 1 5.4679 -4.7600 -0.0495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193000691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:28 Heat of formation + Delta-G solvation = -93.183287 kcal Electronic energy + Delta-G solvation = -24859.403179 eV Core-core repulsion = 20900.075435 eV Total energy + Delta-G solvation = -3959.327744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.16410 -40.11618 -38.52752 -35.30327 -34.81498 -33.95544 -33.09413 -32.55394 -31.72654 -30.60271 -28.74836 -26.14761 -25.48487 -23.79336 -23.35405 -21.57173 -20.64316 -19.02623 -18.21547 -17.46498 -16.96451 -16.54766 -16.24444 -16.03290 -15.86048 -15.33959 -15.09237 -14.81139 -14.38828 -14.23235 -14.04422 -13.89923 -13.46373 -13.37387 -13.26041 -12.88930 -12.60723 -12.38039 -12.23258 -12.00569 -11.58620 -11.32010 -11.24691 -11.13357 -10.93178 -10.59888 -10.39295 -10.29712 -10.19942 -9.72388 -9.46073 -9.26918 -9.04776 -8.89533 -8.51510 -8.13725 -6.71339 -5.33192 0.36302 0.91905 1.26060 1.61302 2.36774 3.04610 3.13204 3.19433 3.25217 3.84549 3.94415 4.06586 4.29893 4.33909 4.54278 4.63071 4.73911 4.80345 4.85238 4.89382 4.99210 5.09044 5.30033 5.39978 5.49446 5.54668 5.71381 5.77987 5.79720 5.85945 5.89949 5.97805 6.04384 6.08571 6.35631 6.44950 6.47935 6.55036 6.65674 6.79577 6.90015 7.30957 7.87194 7.96702 8.88108 10.22862 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.002774 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.261653 B =10090.952219 C =11559.430786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.006 7.006 11 O -1.007 7.007 12 N -1.133 6.133 13 C 0.164 3.836 14 C -0.083 4.083 15 C -0.097 4.097 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.056 4.056 19 C -0.046 4.046 20 C -0.083 4.083 21 C -0.148 4.148 22 C 0.092 3.908 23 F -0.142 7.142 24 C -0.151 4.151 25 C -0.086 4.086 26 C -0.093 4.093 27 H 0.290 0.710 28 H 0.403 0.597 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.156 -15.454 1.148 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.815 3.185 10 O -0.996 6.996 11 O -0.996 6.996 12 N -0.887 5.887 13 C 0.038 3.962 14 C -0.085 4.085 15 C -0.115 4.115 16 C -0.138 4.138 17 C -0.128 4.128 18 C -0.056 4.056 19 C -0.046 4.046 20 C -0.101 4.101 21 C -0.167 4.167 22 C 0.073 3.927 23 F -0.120 7.120 24 C -0.170 4.170 25 C -0.104 4.104 26 C -0.112 4.112 27 H 0.101 0.899 28 H 0.233 0.767 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.056 -15.377 1.303 21.560 hybrid contribution 1.281 0.912 -0.502 1.651 sum 16.337 -14.465 0.801 21.835 Atomic orbital electron populations 1.69902 1.06788 1.30636 1.40154 1.24746 0.94448 1.00838 0.88506 0.86138 0.80418 0.80470 0.78551 1.18640 1.19652 1.19625 1.30568 1.06100 1.11845 1.66796 0.87933 1.00421 0.72068 0.73216 0.72828 1.93378 1.73002 1.87607 1.45621 1.93355 1.72841 1.87499 1.45949 1.56053 1.55511 1.51113 1.26063 1.20010 0.93379 0.92514 0.90344 1.20034 0.94719 0.95994 0.97727 1.21307 0.99684 0.92123 0.98410 1.21078 0.95548 0.97454 0.99680 1.21168 0.95769 0.97924 0.97944 1.18633 0.93709 0.93933 0.99317 1.18867 0.94192 0.93441 0.98101 1.21208 0.94017 0.99258 0.95571 1.21126 0.96943 0.96360 1.02260 1.17811 0.83237 0.94834 0.96830 1.91498 1.44816 1.96453 1.79254 1.21062 0.97017 0.98444 1.00467 1.21089 0.94239 0.97083 0.97942 1.21206 0.95069 0.96629 0.98252 0.89938 0.76656 0.89673 0.91225 0.85301 0.85722 0.85925 0.84277 0.84442 0.84640 0.84672 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.55 13.19 55.43 0.73 -23.82 16 2 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 3 Si 0.92 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -1.02 -27.22 9.72 30.60 0.30 -26.93 16 8 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 9 S 2.71 69.75 5.02 -107.50 -0.54 69.21 16 10 O -1.01 -28.98 18.02 -57.17 -1.03 -30.01 16 11 O -1.01 -28.50 17.49 -57.17 -1.00 -29.50 16 12 N -1.13 -21.45 5.99 -11.65 -0.07 -21.52 16 13 C 0.16 2.63 6.34 -5.19 -0.03 2.60 16 14 C -0.08 -1.11 5.27 -104.67 -0.55 -1.66 16 15 C -0.10 -1.17 9.69 -39.52 -0.38 -1.56 16 16 C -0.12 -1.21 10.03 -39.63 -0.40 -1.61 16 17 C -0.11 -1.07 9.43 -39.25 -0.37 -1.44 16 18 C -0.06 -0.60 5.88 -104.90 -0.62 -1.22 16 19 C -0.05 -0.45 5.88 -104.90 -0.62 -1.07 16 20 C -0.08 -0.79 9.42 -39.27 -0.37 -1.16 16 21 C -0.15 -1.36 10.01 -39.56 -0.40 -1.75 16 22 C 0.09 0.88 7.30 -39.35 -0.29 0.60 16 23 F -0.14 -1.46 17.26 2.25 0.04 -1.42 16 24 C -0.15 -1.26 10.01 -39.57 -0.40 -1.66 16 25 C -0.09 -0.72 9.42 -39.27 -0.37 -1.09 16 26 C -0.09 -1.11 9.08 -39.25 -0.36 -1.46 16 27 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.40 6.79 8.65 -34.47 -0.30 6.49 16 29 H 0.09 1.41 7.69 -51.93 -0.40 1.01 16 30 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.87 6.21 -52.49 -0.33 0.55 16 34 H 0.14 1.17 6.21 -52.49 -0.33 0.85 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.14 0.84 6.20 -52.49 -0.33 0.51 16 38 H 0.13 1.38 6.21 -52.48 -0.33 1.06 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -35.06 348.38 -10.24 -45.30 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.66 Total: 7.20 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: -4.94 Total: -35.86 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.66 Total: -45.34 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -2.03 Total: -59.51 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 69.75 SS G_CDS: -0.54 Total: 69.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.06 -10.24 -45.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.883 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds