Wall clock time and date at job start Tue Mar 31 2020 19:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99552 * 2 1 4 4 H 1.48510 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47671 * 300.00276 * 3 2 1 6 6 H 1.48498 * 109.47304 * 60.00962 * 3 2 1 7 7 C 1.37875 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00057 * 179.97438 * 7 2 1 9 9 S 1.76210 * 119.99451 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40244 * 66.46263 * 9 7 2 11 11 O 1.42102 * 106.40260 * 293.54256 * 9 7 2 12 12 N 1.65597 * 107.21396 * 180.02562 * 9 7 2 13 13 C 1.46503 * 120.00214 * 65.00193 * 12 9 7 14 14 C 1.50697 * 109.47291 * 164.99824 * 13 12 9 15 15 C 1.38341 * 119.93900 * 270.27307 * 14 13 12 16 16 C 1.38303 * 120.24475 * 180.27713 * 15 14 13 17 17 C 1.38039 * 120.12211 * 359.44585 * 16 15 14 18 18 C 1.39327 * 119.87549 * 0.27921 * 17 16 15 19 19 C 1.48378 * 120.12227 * 180.02562 * 18 17 16 20 20 C 1.39346 * 120.09566 * 179.72874 * 19 18 17 21 21 C 1.37975 * 119.90358 * 179.74035 * 20 19 18 22 22 C 1.38556 * 120.09482 * 0.53087 * 21 20 19 23 23 F 1.35097 * 119.90275 * 179.74516 * 22 21 20 24 24 C 1.38545 * 120.18888 * 359.71529 * 22 21 20 25 25 C 1.37972 * 120.09778 * 0.03090 * 24 22 21 26 26 C 1.38000 * 119.94042 * 90.00069 * 14 13 12 27 27 H 0.96994 * 120.00289 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99872 * 245.00060 * 12 9 7 29 29 H 1.09000 * 109.47105 * 44.99639 * 13 12 9 30 30 H 1.09005 * 109.47057 * 284.99850 * 13 12 9 31 31 H 1.07998 * 119.87779 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.94275 * 179.72764 * 16 15 14 33 33 H 1.08000 * 120.06299 * 180.29806 * 17 16 15 34 34 H 1.08001 * 120.05038 * 359.96834 * 20 19 18 35 35 H 1.08002 * 119.95341 * 180.22365 * 21 20 19 36 36 H 1.08000 * 119.94927 * 180.02562 * 24 22 21 37 37 H 1.08001 * 120.04883 * 179.97438 * 25 24 22 38 38 H 1.08003 * 120.05748 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9353 -0.0005 13 6 3.1395 -4.1088 1.1493 14 6 3.7949 -5.4638 1.0771 15 6 3.1877 -6.5569 1.6691 16 6 3.7864 -7.8023 1.6116 17 6 4.9886 -7.9632 0.9526 18 6 5.6017 -6.8670 0.3497 19 6 6.8937 -7.0338 -0.3606 20 6 7.5036 -5.9382 -0.9683 21 6 8.7077 -6.0968 -1.6231 22 6 9.3049 -7.3454 -1.6865 23 9 10.4813 -7.4973 -2.3331 24 6 8.6993 -8.4385 -1.0881 25 6 7.4979 -8.2878 -0.4268 26 6 4.9968 -5.6132 0.4157 27 1 -0.4850 0.8400 0.0004 28 1 2.3173 -4.5324 -0.7619 29 1 2.5624 -4.0329 2.0709 30 1 3.9056 -3.3334 1.1355 31 1 2.2447 -6.4364 2.1816 32 1 3.3103 -8.6514 2.0793 33 1 5.4529 -8.9371 0.9041 34 1 7.0364 -4.9655 -0.9236 35 1 9.1829 -5.2474 -2.0913 36 1 9.1685 -9.4099 -1.1396 37 1 7.0263 -9.1405 0.0391 38 1 5.4679 -4.7600 -0.0495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193000691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:26 Heat of formation + Delta-G solvation = -116.616438 kcal Electronic energy + Delta-G solvation = -24860.419317 eV Core-core repulsion = 20900.075435 eV Total energy + Delta-G solvation = -3960.343882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.90532 -40.90257 -39.31763 -37.39603 -36.19989 -36.10821 -35.14742 -33.37668 -32.48698 -31.57073 -29.52735 -28.24244 -26.65313 -24.56209 -24.12255 -22.35416 -21.56370 -20.98680 -19.34466 -18.93762 -18.30028 -17.76143 -17.29317 -17.05178 -16.80687 -16.61427 -16.59535 -16.09687 -15.78840 -15.34116 -15.08704 -14.97579 -14.66342 -14.22735 -14.17214 -13.99732 -13.89621 -13.73270 -13.25630 -13.13486 -13.05721 -13.01428 -12.66674 -12.49732 -12.40720 -12.26777 -12.19017 -11.96425 -11.56691 -11.25176 -10.99075 -10.52686 -10.20077 -10.10712 -9.79361 -8.91983 -8.73935 -7.46383 -0.39578 0.20270 0.27398 0.58080 0.83325 1.34857 1.36439 1.53383 2.22291 2.49988 2.59912 2.95967 3.18565 3.26609 3.52415 3.62901 3.72071 3.84378 3.92996 4.04289 4.16035 4.28696 4.34724 4.40330 4.44078 4.59153 4.61486 4.71502 4.89242 4.92134 5.04662 5.11871 5.12476 5.17739 5.24454 5.26732 5.32224 5.54328 5.69526 5.71353 5.88770 5.92308 6.04846 6.36794 6.80484 8.22657 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.002774 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.261653 B =10090.952219 C =11559.430786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.245 1.245 5 H -0.262 1.262 6 H -0.260 1.260 7 C -1.037 5.037 8 H 0.123 0.877 9 S 2.721 3.279 10 O -1.046 7.046 11 O -1.042 7.042 12 N -1.116 6.116 13 C 0.159 3.841 14 C -0.099 4.099 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.103 4.103 18 C -0.058 4.058 19 C -0.059 4.059 20 C -0.092 4.092 21 C -0.155 4.155 22 C 0.076 3.924 23 F -0.149 7.149 24 C -0.150 4.150 25 C -0.081 4.081 26 C -0.101 4.101 27 H 0.298 0.702 28 H 0.413 0.587 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.538 -16.620 1.328 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.168 1.168 5 H -0.187 1.187 6 H -0.185 1.185 7 C -1.171 5.171 8 H 0.141 0.859 9 S 2.822 3.178 10 O -1.036 7.036 11 O -1.032 7.032 12 N -0.875 5.875 13 C 0.033 3.967 14 C -0.101 4.101 15 C -0.132 4.132 16 C -0.134 4.134 17 C -0.121 4.121 18 C -0.058 4.058 19 C -0.059 4.059 20 C -0.110 4.110 21 C -0.174 4.174 22 C 0.057 3.943 23 F -0.128 7.128 24 C -0.168 4.168 25 C -0.099 4.099 26 C -0.120 4.120 27 H 0.108 0.892 28 H 0.247 0.753 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.435 -16.569 1.479 24.097 hybrid contribution 0.616 1.124 -0.551 1.395 sum 18.051 -15.445 0.927 23.775 Atomic orbital electron populations 1.69998 1.08811 1.32236 1.41611 1.26016 0.95344 1.05418 0.87585 0.85092 0.79623 0.75162 0.79220 1.16805 1.18653 1.18460 1.30919 1.07285 1.12418 1.66444 0.85910 0.99844 0.72543 0.73926 0.71439 1.93313 1.74874 1.88416 1.46983 1.93302 1.74517 1.88234 1.47118 1.55424 1.54904 1.49636 1.27560 1.20181 0.92931 0.95116 0.88464 1.19768 0.95648 0.94681 0.99961 1.21426 0.99920 0.92949 0.98861 1.21368 0.95599 0.97244 0.99182 1.21563 0.95250 0.98961 0.96345 1.18790 0.94042 0.93737 0.99195 1.18955 0.94077 0.94296 0.98621 1.21339 0.94236 0.99668 0.95782 1.21275 0.96965 0.96825 1.02319 1.18079 0.83269 0.95556 0.97353 1.91479 1.45273 1.96511 1.79503 1.21334 0.96902 0.99014 0.99582 1.21363 0.93987 0.97218 0.97337 1.21297 0.94725 0.97720 0.98244 0.89174 0.75306 0.90825 0.90192 0.85758 0.83047 0.82706 0.83883 0.83481 0.82472 0.82092 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.09 13.19 21.45 0.28 -52.81 16 2 C 0.07 3.79 5.46 84.65 0.46 4.25 16 3 Si 0.99 40.65 29.54 68.60 2.03 42.67 16 4 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -1.04 -55.70 9.72 67.73 0.66 -55.04 16 8 H 0.12 5.85 7.81 -2.91 -0.02 5.83 16 9 S 2.72 143.77 5.02 -56.49 -0.28 143.49 16 10 O -1.05 -62.26 18.02 -128.00 -2.31 -64.57 16 11 O -1.04 -61.16 17.49 -128.00 -2.24 -63.40 16 12 N -1.12 -42.95 5.99 -190.78 -1.14 -44.09 16 13 C 0.16 5.13 6.34 85.63 0.54 5.68 16 14 C -0.10 -2.58 5.27 -19.90 -0.10 -2.69 16 15 C -0.11 -2.65 9.69 22.31 0.22 -2.43 16 16 C -0.12 -2.05 10.03 22.24 0.22 -1.83 16 17 C -0.10 -1.66 9.43 22.48 0.21 -1.44 16 18 C -0.06 -1.11 5.88 -20.04 -0.12 -1.23 16 19 C -0.06 -1.03 5.88 -20.04 -0.12 -1.15 16 20 C -0.09 -1.63 9.42 22.47 0.21 -1.42 16 21 C -0.16 -2.65 10.01 22.28 0.22 -2.43 16 22 C 0.08 1.34 7.30 22.42 0.16 1.51 16 23 F -0.15 -2.89 17.26 44.97 0.78 -2.11 16 24 C -0.15 -2.09 10.01 22.28 0.22 -1.87 16 25 C -0.08 -1.10 9.42 22.47 0.21 -0.89 16 26 C -0.10 -2.30 9.08 22.48 0.20 -2.09 16 27 H 0.30 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.41 14.11 8.65 -96.74 -0.84 13.27 16 29 H 0.07 2.53 7.69 -2.39 -0.02 2.51 16 30 H 0.08 2.38 8.08 -2.38 -0.02 2.36 16 31 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.16 1.44 6.21 -2.91 -0.02 1.42 16 34 H 0.14 2.29 6.21 -2.91 -0.02 2.27 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.16 1.24 6.20 -2.91 -0.02 1.22 16 38 H 0.13 2.78 6.21 -2.91 -0.02 2.76 16 Total: -1.00 -77.11 348.38 0.61 -76.50 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.29 Total: 27.38 kcal Atomic # 6 Polarization: -66.28 SS G_CDS: 3.21 Total: -63.07 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -0.86 Total: -96.90 kcal Atomic # 8 Polarization: -123.42 SS G_CDS: -4.54 Total: -127.96 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: 143.77 SS G_CDS: -0.28 Total: 143.49 kcal Total: -77.11 0.61 -76.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.118 kcal (2) G-P(sol) polarization free energy of solvation -77.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds