Wall clock time and date at job start Tue Mar 31 2020 19:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00404 * 2 1 4 4 H 1.48499 * 109.47203 * 270.00651 * 3 2 1 5 5 H 1.48495 * 109.46665 * 30.00444 * 3 2 1 6 6 H 1.48497 * 109.47251 * 150.00221 * 3 2 1 7 7 C 1.37884 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99478 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00249 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47299 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00174 * 262.21650 * 10 9 7 12 12 C 1.50706 * 109.47166 * 269.99672 * 11 10 9 13 13 C 1.38239 * 119.98724 * 269.72710 * 12 11 10 14 14 C 1.38217 * 120.01032 * 179.72186 * 13 12 11 15 15 C 1.38352 * 119.98440 * 0.55382 * 14 13 12 16 16 Cl 1.73603 * 120.01094 * 179.70200 * 15 14 13 17 17 C 1.38350 * 119.97689 * 359.72179 * 15 14 13 18 18 C 1.38216 * 119.98544 * 0.02562 * 17 15 14 19 19 C 1.34782 * 119.99959 * 82.21533 * 10 9 7 20 20 O 1.21622 * 120.00062 * 181.19227 * 19 10 9 21 21 C 1.47170 * 119.99518 * 1.19612 * 19 10 9 22 22 C 1.37988 * 126.43212 * 170.89653 * 21 19 10 23 23 C 1.39691 * 107.63677 * 180.02562 * 22 21 19 24 24 O 1.36005 * 125.66969 * 179.97438 * 23 22 21 25 25 N 1.31221 * 108.65896 * 0.02562 * 23 22 21 26 26 N 1.36668 * 126.44099 * 350.93483 * 21 19 10 27 27 H 0.97006 * 126.09513 * 359.95009 * 26 21 19 28 28 H 0.97001 * 119.99975 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46853 * 60.00104 * 9 7 2 30 30 H 1.08993 * 109.47009 * 300.00124 * 9 7 2 31 31 H 1.08993 * 109.47537 * 29.99893 * 11 10 9 32 32 H 1.09009 * 109.47013 * 150.00135 * 11 10 9 33 33 H 1.08001 * 119.99222 * 0.02562 * 13 12 11 34 34 H 1.07994 * 120.00550 * 180.27263 * 14 13 12 35 35 H 1.07997 * 120.00932 * 179.97438 * 17 15 14 36 36 H 1.07998 * 119.99604 * 179.97438 * 18 17 15 37 37 H 1.07997 * 126.18446 * 359.77485 * 22 21 19 38 38 H 0.96702 * 114.00380 * 89.99909 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 2.5472 -4.2806 -1.2593 12 6 1.5955 -5.4245 -1.4977 13 6 1.8977 -6.6859 -1.0196 14 6 1.0224 -7.7341 -1.2329 15 6 -0.1509 -7.5232 -1.9350 16 17 -1.2470 -8.8410 -2.2100 17 6 -0.4501 -6.2618 -2.4182 18 6 0.4235 -5.2133 -2.1997 19 6 2.7618 -4.0228 1.1541 20 8 3.5685 -4.9330 1.1502 21 6 2.3959 -3.3691 2.4209 22 6 2.7440 -3.7868 3.6891 23 6 2.1910 -2.8828 4.5992 24 8 2.3082 -2.9482 5.9526 25 7 1.5387 -1.9607 3.9313 26 7 1.6469 -2.2347 2.5623 27 1 1.2593 -1.7123 1.8425 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.4726 -3.5686 -2.0812 32 1 3.5666 -4.6624 -1.2007 33 1 2.8156 -6.8512 -0.4750 34 1 1.2566 -8.7185 -0.8555 35 1 -1.3656 -6.0967 -2.9667 36 1 0.1903 -4.2286 -2.5772 37 1 3.3337 -4.6578 3.9340 38 1 3.0764 -2.4777 6.3041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193466864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:45 Heat of formation + Delta-G solvation = 33.846681 kcal Electronic energy + Delta-G solvation = -26246.531789 eV Core-core repulsion = 22310.588733 eV Total energy + Delta-G solvation = -3935.943056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97894 -39.61417 -38.56156 -36.78518 -36.53344 -35.56565 -33.30910 -31.67365 -31.00960 -29.93095 -29.68117 -27.79512 -26.11542 -23.75217 -22.80754 -22.38050 -21.48534 -20.78937 -19.39604 -17.66814 -17.25555 -16.94117 -16.57393 -15.92342 -15.78125 -15.38700 -15.26522 -14.89245 -14.48940 -14.35293 -13.54519 -13.51991 -13.44589 -13.19545 -13.11243 -12.85596 -12.67099 -12.05107 -11.96812 -11.78868 -11.50546 -11.41468 -11.31549 -11.17037 -10.96008 -10.76784 -10.52601 -10.17927 -9.97780 -9.59987 -9.05711 -8.97752 -8.86069 -8.59103 -8.41623 -8.10774 -6.62130 -4.77704 1.12759 1.36078 1.67274 2.10834 2.68881 3.02750 3.12298 3.14157 3.23397 3.42062 3.66976 3.86074 4.02053 4.44431 4.70770 4.80488 4.92472 4.97230 5.08313 5.34062 5.42649 5.59406 5.68713 5.72250 5.87869 5.97871 6.03953 6.09982 6.16411 6.25915 6.27656 6.60771 6.63990 6.67599 6.85912 7.02976 7.34620 7.47766 7.73294 7.81355 7.86972 8.13041 8.35406 8.55005 8.95224 10.40928 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.004002 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.664674 B = 6995.659741 C = 8657.259054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.216 3.784 10 N -0.585 5.585 11 C 0.157 3.843 12 C -0.095 4.095 13 C -0.085 4.085 14 C -0.117 4.117 15 C -0.035 4.035 16 Cl -0.082 7.082 17 C -0.115 4.115 18 C -0.089 4.089 19 C 0.588 3.412 20 O -0.545 6.545 21 C 0.056 3.944 22 C -0.230 4.230 23 C 0.229 3.771 24 O -0.463 6.463 25 N -0.293 5.293 26 N -0.401 5.401 27 H 0.473 0.527 28 H 0.276 0.724 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -9.224 -2.574 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.609 4.609 8 H 0.091 0.909 9 C 0.095 3.905 10 N -0.314 5.314 11 C 0.034 3.966 12 C -0.096 4.096 13 C -0.103 4.103 14 C -0.135 4.135 15 C -0.061 4.061 16 Cl -0.053 7.053 17 C -0.134 4.134 18 C -0.107 4.107 19 C 0.374 3.626 20 O -0.423 6.423 21 C -0.077 4.077 22 C -0.262 4.262 23 C 0.026 3.974 24 O -0.266 6.266 25 N -0.131 5.131 26 N -0.136 5.136 27 H 0.342 0.658 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.173 0.827 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.676 -8.985 -2.514 9.355 hybrid contribution 0.799 0.716 -0.294 1.112 sum 1.475 -8.269 -2.808 8.857 Atomic orbital electron populations 1.69902 1.06033 1.28802 1.46352 1.25087 0.95091 1.00030 0.93525 0.86360 0.80054 0.81883 0.78781 1.19871 1.20463 1.19306 1.21618 0.94589 0.89886 1.54840 0.90859 1.19869 0.88095 0.83101 0.99415 1.48102 1.44294 1.33686 1.05365 1.20322 0.97345 0.92030 0.86909 1.20490 0.96409 0.95367 0.97356 1.21224 0.99707 0.91629 0.97784 1.21035 0.93059 1.00179 0.99255 1.20939 0.93099 0.89317 1.02787 1.98352 1.63482 1.48116 1.95339 1.21019 1.00472 0.90992 1.00917 1.21156 0.93014 0.98901 0.97654 1.17093 0.80879 0.82275 0.82306 1.90721 1.34698 1.30407 1.86458 1.21142 0.99642 0.91681 0.95273 1.21719 1.09742 1.05215 0.89517 1.19589 0.99278 0.94152 0.84365 1.84877 1.51824 1.75887 1.14002 1.77217 1.24059 1.22516 0.89337 1.48932 1.38578 1.20550 1.05511 0.65805 0.91386 0.92679 0.94667 0.88712 0.89073 0.84371 0.85186 0.85086 0.84654 0.82743 0.75281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.33 13.29 55.43 0.74 -20.59 16 2 C 0.07 1.64 5.07 -17.82 -0.09 1.55 16 3 Si 0.90 18.87 29.54 -169.99 -5.02 13.85 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.57 -12.99 7.30 -34.44 -0.25 -13.24 16 8 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.22 4.52 4.73 -5.20 -0.02 4.49 16 10 N -0.58 -10.98 2.46 -177.81 -0.44 -11.42 16 11 C 0.16 2.44 5.51 -5.19 -0.03 2.41 16 12 C -0.09 -1.38 5.46 -104.62 -0.57 -1.95 16 13 C -0.08 -1.19 9.70 -39.59 -0.38 -1.57 16 14 C -0.12 -1.50 9.83 -39.55 -0.39 -1.89 16 15 C -0.03 -0.45 6.32 -39.50 -0.25 -0.70 16 16 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16 17 C -0.12 -1.47 9.83 -39.55 -0.39 -1.86 16 18 C -0.09 -1.20 9.70 -39.59 -0.38 -1.59 16 19 C 0.59 11.75 7.58 -12.63 -0.10 11.66 16 20 O -0.55 -11.08 16.08 5.26 0.08 -11.00 16 21 C 0.06 1.14 6.68 -82.18 -0.55 0.59 16 22 C -0.23 -4.28 10.65 -39.13 -0.42 -4.70 16 23 C 0.23 4.26 8.41 -17.27 -0.15 4.12 16 24 O -0.46 -7.02 13.66 -19.76 -0.27 -7.29 16 25 N -0.29 -6.19 12.68 30.46 0.39 -5.80 16 26 N -0.40 -8.68 6.13 33.41 0.20 -8.48 16 27 H 0.47 10.75 3.38 -182.64 -0.62 10.13 16 28 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 29 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 30 H 0.04 0.81 5.17 -51.93 -0.27 0.54 16 31 H 0.09 1.37 8.01 -51.93 -0.42 0.96 16 32 H 0.09 1.38 7.35 -51.92 -0.38 1.00 16 33 H 0.14 1.95 7.65 -52.49 -0.40 1.55 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.15 2.56 8.06 -52.49 -0.42 2.14 16 38 H 0.39 3.75 9.07 45.56 0.41 4.17 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -26.76 347.88 -7.87 -34.63 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -3.32 Total: 16.00 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -3.97 Total: -2.68 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.89 Total: -46.29 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.19 Total: -18.29 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.76 -7.87 -34.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193466864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.472 kcal (2) G-P(sol) polarization free energy of solvation -26.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds