Wall clock time and date at job start Tue Mar 31 2020 19:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00404 * 2 1 4 4 H 1.48499 * 109.47203 * 270.00651 * 3 2 1 5 5 H 1.48495 * 109.46665 * 30.00444 * 3 2 1 6 6 H 1.48497 * 109.47251 * 150.00221 * 3 2 1 7 7 C 1.37884 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99478 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00249 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47299 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00174 * 262.21650 * 10 9 7 12 12 C 1.50706 * 109.47166 * 269.99672 * 11 10 9 13 13 C 1.38239 * 119.98724 * 269.72710 * 12 11 10 14 14 C 1.38217 * 120.01032 * 179.72186 * 13 12 11 15 15 C 1.38352 * 119.98440 * 0.55382 * 14 13 12 16 16 Cl 1.73603 * 120.01094 * 179.70200 * 15 14 13 17 17 C 1.38350 * 119.97689 * 359.72179 * 15 14 13 18 18 C 1.38216 * 119.98544 * 0.02562 * 17 15 14 19 19 C 1.34782 * 119.99959 * 82.21533 * 10 9 7 20 20 O 1.21622 * 120.00062 * 181.19227 * 19 10 9 21 21 C 1.47170 * 119.99518 * 1.19612 * 19 10 9 22 22 C 1.37988 * 126.43212 * 170.89653 * 21 19 10 23 23 C 1.39691 * 107.63677 * 180.02562 * 22 21 19 24 24 O 1.36005 * 125.66969 * 179.97438 * 23 22 21 25 25 N 1.31221 * 108.65896 * 0.02562 * 23 22 21 26 26 N 1.36668 * 126.44099 * 350.93483 * 21 19 10 27 27 H 0.97006 * 126.09513 * 359.95009 * 26 21 19 28 28 H 0.97001 * 119.99975 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46853 * 60.00104 * 9 7 2 30 30 H 1.08993 * 109.47009 * 300.00124 * 9 7 2 31 31 H 1.08993 * 109.47537 * 29.99893 * 11 10 9 32 32 H 1.09009 * 109.47013 * 150.00135 * 11 10 9 33 33 H 1.08001 * 119.99222 * 0.02562 * 13 12 11 34 34 H 1.07994 * 120.00550 * 180.27263 * 14 13 12 35 35 H 1.07997 * 120.00932 * 179.97438 * 17 15 14 36 36 H 1.07998 * 119.99604 * 179.97438 * 18 17 15 37 37 H 1.07997 * 126.18446 * 359.77485 * 22 21 19 38 38 H 0.96702 * 114.00380 * 89.99909 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 2.5472 -4.2806 -1.2593 12 6 1.5955 -5.4245 -1.4977 13 6 1.8977 -6.6859 -1.0196 14 6 1.0224 -7.7341 -1.2329 15 6 -0.1509 -7.5232 -1.9350 16 17 -1.2470 -8.8410 -2.2100 17 6 -0.4501 -6.2618 -2.4182 18 6 0.4235 -5.2133 -2.1997 19 6 2.7618 -4.0228 1.1541 20 8 3.5685 -4.9330 1.1502 21 6 2.3959 -3.3691 2.4209 22 6 2.7440 -3.7868 3.6891 23 6 2.1910 -2.8828 4.5992 24 8 2.3082 -2.9482 5.9526 25 7 1.5387 -1.9607 3.9313 26 7 1.6469 -2.2347 2.5623 27 1 1.2593 -1.7123 1.8425 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.4726 -3.5686 -2.0812 32 1 3.5666 -4.6624 -1.2007 33 1 2.8156 -6.8512 -0.4750 34 1 1.2566 -8.7185 -0.8555 35 1 -1.3656 -6.0967 -2.9667 36 1 0.1903 -4.2286 -2.5772 37 1 3.3337 -4.6578 3.9340 38 1 3.0764 -2.4777 6.3041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193466864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:44 Heat of formation + Delta-G solvation = 16.601633 kcal Electronic energy + Delta-G solvation = -26247.279591 eV Core-core repulsion = 22310.588733 eV Total energy + Delta-G solvation = -3936.690858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.49543 -40.87572 -39.85735 -38.10837 -37.58705 -37.04369 -34.95217 -33.01421 -32.04315 -31.34667 -31.21206 -29.43954 -27.42404 -25.43304 -24.00725 -23.67383 -22.83157 -22.06489 -20.91536 -19.16489 -18.77276 -18.23930 -18.02838 -17.35275 -17.21660 -16.71473 -16.46642 -16.38233 -15.92404 -15.72780 -14.85800 -14.77164 -14.66690 -14.47265 -14.40511 -14.32838 -14.17187 -13.53035 -13.31017 -13.22116 -12.92287 -12.76929 -12.59103 -12.44579 -12.33643 -12.14530 -11.87702 -11.76774 -11.42839 -11.14716 -10.80174 -10.44225 -10.01104 -9.96460 -9.69823 -9.57999 -8.40938 -6.60398 0.04604 0.12885 0.32407 1.11378 1.26593 1.36613 1.41960 1.48579 1.72054 2.00362 2.13298 2.31105 2.70751 2.89985 3.03496 3.55069 3.79828 3.81892 3.95015 4.11493 4.20509 4.36672 4.37906 4.49944 4.61005 4.67767 4.69695 4.77890 4.92432 5.01264 5.22012 5.23108 5.33125 5.43944 5.55874 5.59135 5.72855 5.80940 6.16931 6.26505 6.48625 6.60067 6.74724 6.98992 7.15383 8.61390 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.004002 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.664674 B = 6995.659741 C = 8657.259054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.038 3.962 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.568 4.568 8 H 0.063 0.937 9 C 0.229 3.771 10 N -0.582 5.582 11 C 0.155 3.845 12 C -0.106 4.106 13 C -0.092 4.092 14 C -0.117 4.117 15 C -0.039 4.039 16 Cl -0.069 7.069 17 C -0.116 4.116 18 C -0.094 4.094 19 C 0.584 3.416 20 O -0.552 6.552 21 C 0.039 3.961 22 C -0.224 4.224 23 C 0.243 3.757 24 O -0.461 6.461 25 N -0.323 5.323 26 N -0.420 5.420 27 H 0.467 0.533 28 H 0.277 0.723 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.176 0.824 38 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -9.974 -2.464 10.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.167 4.167 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.607 4.607 8 H 0.082 0.918 9 C 0.107 3.893 10 N -0.311 5.311 11 C 0.033 3.967 12 C -0.107 4.107 13 C -0.110 4.110 14 C -0.135 4.135 15 C -0.066 4.066 16 Cl -0.040 7.040 17 C -0.135 4.135 18 C -0.113 4.113 19 C 0.370 3.630 20 O -0.431 6.431 21 C -0.094 4.094 22 C -0.256 4.256 23 C 0.040 3.960 24 O -0.267 6.267 25 N -0.162 5.162 26 N -0.152 5.152 27 H 0.333 0.667 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.193 0.807 38 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 0.989 -9.745 -2.404 10.086 hybrid contribution 0.716 0.862 -0.253 1.149 sum 1.705 -8.883 -2.657 9.427 Atomic orbital electron populations 1.69960 1.06894 1.29271 1.47475 1.25590 0.95547 1.02128 0.93410 0.85654 0.78719 0.79331 0.78869 1.19105 1.20629 1.19889 1.21671 0.94079 0.90756 1.54163 0.91845 1.19581 0.88034 0.83165 0.98474 1.48090 1.43563 1.33182 1.06230 1.20478 0.97902 0.92561 0.85729 1.20402 0.96722 0.95154 0.98448 1.21237 0.99955 0.91831 0.98019 1.21223 0.92767 1.00674 0.98865 1.21071 0.93298 0.89785 1.02465 1.98357 1.62993 1.47452 1.95235 1.21231 1.00855 0.90721 1.00644 1.21248 0.92903 0.99479 0.97661 1.17144 0.80962 0.82306 0.82542 1.90705 1.35058 1.30710 1.86592 1.21450 0.99963 0.91747 0.96224 1.22008 1.09254 1.05545 0.88816 1.19690 0.97693 0.93076 0.85537 1.84839 1.53562 1.76396 1.11910 1.77170 1.25594 1.23999 0.89399 1.48836 1.39639 1.21179 1.05578 0.66658 0.91364 0.92909 0.96124 0.87852 0.88744 0.84743 0.83440 0.83347 0.84240 0.80652 0.72136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.05 13.29 21.45 0.28 -43.77 16 2 C 0.04 1.78 5.07 84.66 0.43 2.21 16 3 Si 0.95 38.49 29.54 68.60 2.03 40.52 16 4 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.57 -25.98 7.30 25.60 0.19 -25.80 16 8 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.23 9.67 4.73 85.63 0.40 10.07 16 10 N -0.58 -21.82 2.46 -834.71 -2.06 -23.88 16 11 C 0.15 4.78 5.51 85.64 0.47 5.25 16 12 C -0.11 -3.02 5.46 -19.86 -0.11 -3.12 16 13 C -0.09 -2.49 9.70 22.26 0.22 -2.28 16 14 C -0.12 -2.84 9.83 22.29 0.22 -2.62 16 15 C -0.04 -0.95 6.32 22.32 0.14 -0.81 16 16 Cl -0.07 -1.49 28.96 -2.72 -0.08 -1.57 16 17 C -0.12 -2.80 9.83 22.29 0.22 -2.58 16 18 C -0.09 -2.48 9.70 22.27 0.22 -2.27 16 19 C 0.58 23.20 7.58 86.59 0.66 23.86 16 20 O -0.55 -22.10 16.08 -4.10 -0.07 -22.16 16 21 C 0.04 1.57 6.68 40.68 0.27 1.84 16 22 C -0.22 -8.06 10.65 22.56 0.24 -7.82 16 23 C 0.24 8.73 8.41 85.14 0.72 9.44 16 24 O -0.46 -12.85 13.66 -93.61 -1.28 -14.13 16 25 N -0.32 -13.54 12.68 -170.75 -2.16 -15.70 16 26 N -0.42 -18.26 6.13 -48.20 -0.30 -18.55 16 27 H 0.47 21.54 3.38 -213.35 -0.72 20.82 16 28 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 29 H 0.05 2.24 8.01 -2.39 -0.02 2.22 16 30 H 0.02 0.98 5.17 -2.39 -0.01 0.97 16 31 H 0.10 2.96 8.01 -2.39 -0.02 2.94 16 32 H 0.09 2.83 7.35 -2.38 -0.02 2.81 16 33 H 0.13 3.72 7.65 -2.91 -0.02 3.70 16 34 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 37 H 0.18 5.44 8.06 -2.91 -0.02 5.41 16 38 H 0.42 6.81 9.07 -74.06 -0.67 6.14 16 Total: -1.00 -55.61 347.88 0.40 -55.21 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.25 Total: 38.65 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 4.28 Total: 5.38 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -4.23 Total: -101.90 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.35 Total: -36.29 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -55.61 0.40 -55.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193466864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.813 kcal (2) G-P(sol) polarization free energy of solvation -55.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds