Wall clock time and date at job start Tue Mar 31 2020 18:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00356 * 2 1 4 4 H 1.48501 * 109.46978 * 239.99843 * 3 2 1 5 5 H 1.48500 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47478 * 119.99454 * 3 2 1 7 7 C 1.38950 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00484 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00376 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99900 * 179.97438 * 10 9 7 13 13 N 1.46509 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99890 * 180.02562 * 13 12 10 15 15 O 1.21599 * 119.99914 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00364 * 179.97438 * 14 13 12 17 17 C 1.40179 * 120.00525 * 175.53836 * 16 14 13 18 18 C 1.38802 * 120.02908 * 34.65411 * 17 16 14 19 19 C 1.38351 * 119.99249 * 179.76918 * 18 17 16 20 20 F 1.35094 * 119.97245 * 180.25326 * 19 18 17 21 21 C 1.38624 * 120.05359 * 0.50553 * 19 18 17 22 22 F 1.35108 * 119.96446 * 179.76990 * 21 19 18 23 23 C 1.38587 * 120.06814 * 359.75213 * 21 19 18 24 24 F 1.35100 * 119.99571 * 180.02562 * 23 21 19 25 25 C 1.38500 * 120.00640 * 359.97438 * 23 21 19 26 26 F 1.35102 * 120.03043 * 180.02562 * 25 23 21 27 27 H 0.97008 * 119.99575 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99306 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.47410 * 60.00235 * 12 10 9 30 30 H 1.08997 * 109.47306 * 299.99523 * 12 10 9 31 31 H 0.97000 * 120.00072 * 0.27715 * 13 12 10 32 32 H 0.97006 * 119.99729 * 355.54291 * 16 14 13 33 33 H 1.08002 * 120.00647 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2435 -4.8629 0.0022 13 7 2.1956 -5.9765 0.0027 14 6 1.7462 -7.2472 0.0027 15 8 0.5507 -7.4693 0.0028 16 7 2.6219 -8.2717 0.0026 17 6 2.1574 -9.5909 0.0971 18 6 0.9560 -9.9486 -0.4988 19 6 0.5006 -11.2520 -0.4091 20 9 -0.6663 -11.6009 -0.9936 21 6 1.2382 -12.1989 0.2844 22 9 0.7895 -13.4701 0.3748 23 6 2.4355 -11.8431 0.8848 24 9 3.1533 -12.7672 1.5599 25 6 2.8966 -10.5404 0.7920 26 9 4.0640 -10.1931 1.3767 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6172 -4.9213 -0.8881 30 1 0.6166 -4.9201 0.8919 31 1 3.1492 -5.7993 0.0066 32 1 3.5737 -8.0961 -0.0627 33 1 0.3787 -9.2106 -1.0359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208387448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:36 Heat of formation + Delta-G solvation = -225.338081 kcal Electronic energy + Delta-G solvation = -27374.643145 eV Core-core repulsion = 22321.434784 eV Total energy + Delta-G solvation = -5053.208361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.068 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.07730 -50.68054 -50.09420 -49.56703 -41.95706 -40.33906 -39.47015 -36.30153 -35.95997 -35.42327 -33.35978 -31.57778 -30.89976 -28.96338 -26.47797 -25.02735 -24.35538 -22.33718 -21.40095 -20.49097 -20.16621 -19.82340 -19.54120 -19.11024 -18.24289 -17.99014 -17.69992 -17.43163 -17.17290 -16.96717 -16.70912 -16.55942 -16.41887 -16.20941 -16.05454 -15.83810 -15.72585 -15.60325 -15.58363 -15.16409 -14.62740 -13.97755 -13.80736 -13.68431 -13.52379 -13.18537 -13.13099 -12.88513 -12.45251 -12.13410 -11.68393 -11.54485 -11.46083 -10.54780 -10.36245 -10.13071 -10.07568 -9.54109 -8.49730 -5.99506 -0.76145 -0.68485 1.02661 1.39297 1.44857 1.50492 1.54970 1.90962 1.93005 1.97850 2.28346 2.48899 2.69569 2.85381 2.97396 3.14301 3.17529 3.18164 3.52160 3.91877 4.18873 4.25879 4.36932 4.46240 4.47512 4.65680 4.87098 5.15013 5.32644 5.39922 5.56422 5.93403 6.49319 6.67137 7.05390 7.16577 7.46571 7.96453 8.66689 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.028826 B = 0.002084 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.122632 B =13433.841572 C =14258.372536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.140 3.860 13 N -0.710 5.710 14 C 0.713 3.287 15 O -0.595 6.595 16 N -0.667 5.667 17 C 0.196 3.804 18 C -0.110 4.110 19 C 0.121 3.879 20 F -0.113 7.113 21 C 0.043 3.957 22 F -0.114 7.114 23 C 0.089 3.911 24 F -0.109 7.109 25 C 0.066 3.934 26 F -0.111 7.111 27 H 0.279 0.721 28 H 0.400 0.600 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.415 0.585 32 H 0.432 0.568 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -21.820 -0.627 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.219 3.781 11 O -0.513 6.513 12 C 0.012 3.988 13 N -0.366 5.366 14 C 0.413 3.587 15 O -0.474 6.474 16 N -0.316 5.316 17 C 0.097 3.903 18 C -0.131 4.131 19 C 0.099 3.901 20 F -0.092 7.092 21 C 0.021 3.979 22 F -0.093 7.093 23 C 0.067 3.933 24 F -0.087 7.087 25 C 0.042 3.958 26 F -0.089 7.089 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.254 0.746 32 H 0.272 0.728 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.149 -21.772 -0.591 21.886 hybrid contribution 0.716 0.609 0.204 0.962 sum 2.865 -21.163 -0.387 21.359 Atomic orbital electron populations 1.69667 1.06939 1.29656 1.49266 1.26082 0.96498 1.02596 0.95870 0.84967 0.77746 0.76469 0.79078 1.19503 1.19829 1.19563 1.19679 0.92957 0.83556 1.50369 0.89542 1.41823 1.09659 1.04573 1.63385 1.20432 0.88129 0.85947 0.83554 1.90487 1.15206 1.87538 1.58051 1.20719 0.90700 0.82406 1.04998 1.44645 1.11740 1.02777 1.77481 1.15665 0.84736 0.80575 0.77723 1.90937 1.14559 1.83876 1.58051 1.42257 1.11495 1.01635 1.76167 1.16730 0.94172 0.83522 0.95843 1.21163 0.96732 0.94531 1.00706 1.16946 0.84043 0.91910 0.97166 1.91598 1.43913 1.92279 1.81365 1.17126 0.94667 0.80964 1.05150 1.91581 1.88450 1.34592 1.94662 1.16718 0.91262 0.86026 0.99305 1.91600 1.76203 1.63783 1.77107 1.16806 0.86887 0.91317 1.00770 1.91588 1.43610 1.92048 1.81650 0.91103 0.76594 0.87900 0.88251 0.74639 0.72811 0.80455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.95 13.05 21.66 0.28 -46.67 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 3 Si 0.99 40.34 29.55 68.60 2.03 42.37 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.34 -17.66 9.68 84.04 0.81 -16.85 16 8 H 0.09 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.56 -26.19 5.29 -306.99 -1.62 -27.81 16 10 C 0.43 18.07 7.85 87.66 0.69 18.75 16 11 O -0.62 -29.65 15.24 -3.07 -0.05 -29.70 16 12 C 0.14 4.31 6.15 85.63 0.53 4.83 16 13 N -0.71 -18.71 5.53 -482.27 -2.67 -21.38 16 14 C 0.71 17.31 8.41 179.06 1.51 18.81 16 15 O -0.60 -17.36 13.76 -4.03 -0.06 -17.41 16 16 N -0.67 -11.75 5.24 -316.97 -1.66 -13.41 16 17 C 0.20 3.43 6.31 38.11 0.24 3.67 16 18 C -0.11 -2.00 8.67 22.43 0.19 -1.81 16 19 C 0.12 2.16 7.30 22.39 0.16 2.32 16 20 F -0.11 -2.22 17.18 44.97 0.77 -1.44 16 21 C 0.04 0.77 7.31 22.45 0.16 0.93 16 22 F -0.11 -2.24 17.09 44.97 0.77 -1.47 16 23 C 0.09 1.54 7.31 22.42 0.16 1.70 16 24 F -0.11 -2.05 17.09 44.97 0.77 -1.28 16 25 C 0.07 1.10 7.31 22.50 0.16 1.27 16 26 F -0.11 -1.91 16.87 44.97 0.76 -1.15 16 27 H 0.28 13.50 8.31 -92.70 -0.77 12.73 16 28 H 0.40 17.94 7.90 -92.70 -0.73 17.20 16 29 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 30 H 0.10 2.89 8.14 -2.39 -0.02 2.88 16 31 H 0.42 10.66 7.46 -92.71 -0.69 9.97 16 32 H 0.43 5.44 8.68 -92.70 -0.80 4.63 16 33 H 0.18 3.61 6.19 -2.91 -0.02 3.60 16 Total: -1.00 -60.62 320.99 3.46 -57.16 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: -0.96 Total: 28.57 kcal Atomic # 6 Polarization: 28.53 SS G_CDS: 5.09 Total: 33.62 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -5.67 Total: -109.27 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.10 Total: -47.12 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 3.07 Total: -5.34 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -60.62 3.46 -57.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208387448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.181 kcal (2) G-P(sol) polarization free energy of solvation -60.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds