Wall clock time and date at job start Tue Mar 31 2020 18:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48502 * 109.47344 * 269.99991 * 3 2 1 5 5 H 1.48495 * 109.47005 * 30.00474 * 3 2 1 6 6 H 1.48507 * 109.46822 * 150.00225 * 3 2 1 7 7 C 1.38623 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00060 * 359.97438 * 7 2 1 9 9 O 1.34810 * 119.99919 * 180.02562 * 7 2 1 10 10 C 1.35795 * 116.99934 * 184.95343 * 9 7 2 11 11 C 1.38894 * 119.99619 * 5.77716 * 10 9 7 12 12 C 1.38014 * 120.00887 * 180.02562 * 11 10 9 13 13 C 1.38943 * 119.99239 * 359.97438 * 12 11 10 14 14 N 1.39780 * 120.00510 * 179.97438 * 13 12 11 15 15 S 1.65600 * 120.00013 * 74.31086 * 14 13 12 16 16 O 1.42097 * 106.40254 * 307.22735 * 15 14 13 17 17 O 1.42102 * 106.40063 * 174.30710 * 15 14 13 18 18 C 1.76196 * 107.22091 * 60.76906 * 15 14 13 19 19 C 1.38272 * 120.37771 * 264.13805 * 18 15 14 20 20 N 1.31862 * 120.93160 * 179.97438 * 19 18 15 21 21 C 1.31816 * 121.79366 * 359.97438 * 20 19 18 22 22 C 1.38893 * 120.66192 * 359.97438 * 21 20 19 23 23 N 1.39699 * 120.49427 * 180.02562 * 22 21 20 24 24 C 1.38499 * 120.38215 * 84.11274 * 18 15 14 25 25 C 1.38950 * 119.99059 * 0.25410 * 13 12 11 26 26 C 1.38016 * 119.99081 * 359.48841 * 25 13 12 27 27 H 0.97011 * 119.99769 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99874 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.00281 * 179.97438 * 12 11 10 30 30 H 0.96998 * 120.00053 * 254.30343 * 14 13 12 31 31 H 1.07997 * 119.53847 * 359.97438 * 19 18 15 32 32 H 1.08000 * 119.66558 * 180.02562 * 21 20 19 33 33 H 0.97004 * 119.99828 * 180.02562 * 23 22 21 34 34 H 0.97001 * 120.00345 * 0.02562 * 23 22 21 35 35 H 1.08003 * 120.81507 * 359.75197 * 24 18 15 36 36 H 1.08002 * 120.00555 * 179.74465 * 25 13 12 37 37 H 1.07999 * 119.99740 * 180.22536 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4474 2.6526 0.7001 6 1 3.5475 1.4400 0.7000 7 6 2.0089 -1.2005 -0.0005 8 1 1.4688 -2.1358 -0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9734 -2.4060 -0.1051 11 6 3.2223 -3.5530 -0.3271 12 6 3.8486 -4.7783 -0.4334 13 6 5.2306 -4.8643 -0.3188 14 7 5.8651 -6.1052 -0.4258 15 16 6.0214 -6.8302 -1.9064 16 8 4.7193 -6.8685 -2.4739 17 8 6.8150 -7.9912 -1.7028 18 6 6.9739 -5.7479 -2.9193 19 6 6.3486 -4.8643 -3.7796 20 7 7.0506 -4.0492 -4.5421 21 6 8.3686 -4.0391 -4.5188 22 6 9.0688 -4.8965 -3.6801 23 7 10.4655 -4.8825 -3.6578 24 6 8.3575 -5.7719 -2.8624 25 6 5.9814 -3.7173 -0.0919 26 6 5.3551 -2.4915 0.0090 27 1 -0.4850 0.8402 0.0004 28 1 2.1480 -3.4863 -0.4158 29 1 3.2644 -5.6702 -0.6056 30 1 6.2139 -6.5416 0.3671 31 1 5.2699 -4.8415 -3.8279 32 1 8.9092 -3.3566 -5.1578 33 1 10.9473 -5.4848 -3.0695 34 1 10.9536 -4.2705 -4.2307 35 1 8.8722 -6.4487 -2.1964 36 1 7.0553 -3.7844 0.0013 37 1 5.9389 -1.5995 0.1817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212608299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:10 Heat of formation + Delta-G solvation = -27.237377 kcal Electronic energy + Delta-G solvation = -25976.846353 eV Core-core repulsion = 22040.298200 eV Total energy + Delta-G solvation = -3936.548153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36863 -39.39042 -37.47196 -37.07435 -35.86969 -35.44278 -33.96870 -32.53664 -32.40141 -30.41422 -29.35637 -27.87161 -25.20006 -24.40097 -23.37111 -22.26628 -21.40544 -19.64615 -18.26302 -18.15230 -17.85587 -17.69608 -17.45753 -16.98665 -16.61649 -15.79834 -15.35090 -14.98856 -14.78954 -14.42081 -14.19284 -13.94328 -13.89798 -13.41799 -12.98071 -12.87305 -12.73210 -12.61110 -12.31669 -12.12162 -12.00570 -11.70412 -11.63232 -11.57687 -11.33920 -11.05381 -10.81488 -10.37043 -10.28683 -9.94799 -9.66025 -9.39053 -8.94381 -8.43515 -8.10403 -7.46259 -6.51341 -4.17223 0.23563 0.56251 1.14686 1.95130 2.00242 2.94821 3.16799 3.21247 3.31966 3.34165 3.45025 3.74820 4.15832 4.24928 4.30821 4.42782 4.50244 4.72177 4.77074 4.84740 4.99341 5.16517 5.47703 5.52589 5.57507 5.60301 5.67693 5.99883 6.12373 6.21144 6.40060 6.63197 6.70642 6.88819 6.97226 7.14608 7.17704 7.23314 7.49940 7.70169 7.73121 7.92165 8.82672 9.41996 10.55435 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.003524 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.226143 B = 7944.163103 C = 8964.698282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.110 0.890 9 O -0.208 6.208 10 C 0.168 3.832 11 C -0.215 4.215 12 C -0.052 4.052 13 C 0.014 3.986 14 N -1.043 6.043 15 S 2.693 3.307 16 O -0.944 6.944 17 O -0.967 6.967 18 C -0.675 4.675 19 C 0.151 3.849 20 N -0.453 5.453 21 C 0.081 3.919 22 C 0.141 3.859 23 N -0.871 5.871 24 C -0.057 4.057 25 C -0.064 4.064 26 C -0.188 4.188 27 H 0.281 0.719 28 H 0.141 0.859 29 H 0.125 0.875 30 H 0.416 0.584 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.401 0.599 34 H 0.402 0.598 35 H 0.145 0.855 36 H 0.116 0.884 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.414 -9.884 -4.234 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.127 0.873 9 O -0.111 6.111 10 C 0.114 3.886 11 C -0.235 4.235 12 C -0.073 4.073 13 C -0.081 4.081 14 N -0.798 5.798 15 S 2.782 3.218 16 O -0.934 6.934 17 O -0.957 6.957 18 C -0.763 4.763 19 C -0.009 4.009 20 N -0.161 5.161 21 C -0.082 4.082 22 C 0.034 3.966 23 N -0.411 5.411 24 C -0.088 4.088 25 C -0.085 4.085 26 C -0.208 4.208 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.143 0.857 30 H 0.253 0.747 31 H 0.190 0.810 32 H 0.175 0.825 33 H 0.230 0.770 34 H 0.231 0.769 35 H 0.163 0.837 36 H 0.134 0.866 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.408 -9.690 -5.202 21.443 hybrid contribution 1.631 0.599 0.741 1.889 sum 20.039 -9.090 -4.461 22.452 Atomic orbital electron populations 1.69657 1.05614 1.28756 1.46760 1.24497 0.95051 0.98965 0.95395 0.86179 0.80324 0.81307 0.79110 1.19729 1.20655 1.18294 1.20819 0.76681 0.96862 1.52209 0.87266 1.83589 1.22873 1.25734 1.78949 1.19218 0.91594 0.85634 0.92109 1.21229 1.01568 0.91574 1.09117 1.21143 0.92736 0.97798 0.95586 1.16774 0.90860 0.83398 1.17073 1.52636 1.72421 1.30844 1.23929 1.02317 0.73954 0.72698 0.72839 1.93607 1.36764 1.85630 1.77419 1.93566 1.71307 1.45499 1.85331 1.31723 1.07159 1.19645 1.17819 1.22414 1.00742 0.88444 0.89337 1.67690 1.07035 1.20482 1.20844 1.22657 0.90502 0.97580 0.97482 1.18798 0.85565 0.95996 0.96214 1.42284 1.02296 1.46622 1.49927 1.20646 0.91987 0.97676 0.98522 1.20767 0.98513 0.91194 0.98022 1.20068 0.91948 0.97587 1.11193 0.90828 0.84178 0.85744 0.74669 0.80993 0.82469 0.76986 0.76897 0.83686 0.86632 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.38 13.96 55.48 0.77 -23.61 16 2 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 20.89 28.62 -169.99 -4.86 16.03 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.39 -10.52 9.90 30.87 0.31 -10.22 16 8 H 0.11 3.00 5.51 -52.49 -0.29 2.71 16 9 O -0.21 -5.19 8.58 -0.03 0.00 -5.19 16 10 C 0.17 3.63 6.65 -39.09 -0.26 3.37 16 11 C -0.21 -4.37 9.13 -39.42 -0.36 -4.73 16 12 C -0.05 -0.90 9.32 -39.40 -0.37 -1.27 16 13 C 0.01 0.21 5.77 -83.71 -0.48 -0.27 16 14 N -1.04 -12.79 5.70 32.45 0.18 -12.61 16 15 S 2.69 35.72 5.71 -107.50 -0.61 35.11 16 16 O -0.94 -15.27 16.22 -57.17 -0.93 -16.20 16 17 O -0.97 -13.84 17.52 -57.17 -1.00 -14.84 16 18 C -0.68 -8.63 5.83 -39.47 -0.23 -8.86 16 19 C 0.15 2.15 10.69 -17.53 -0.19 1.96 16 20 N -0.45 -6.31 10.35 -13.08 -0.14 -6.45 16 21 C 0.08 0.87 11.06 -17.32 -0.19 0.68 16 22 C 0.14 1.34 6.79 -83.63 -0.57 0.77 16 23 N -0.87 -4.81 9.10 32.49 0.30 -4.52 16 24 C -0.06 -0.60 9.52 -39.09 -0.37 -0.98 16 25 C -0.06 -0.98 9.96 -39.40 -0.39 -1.37 16 26 C -0.19 -3.41 9.98 -39.42 -0.39 -3.80 16 27 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.14 3.00 5.70 -52.48 -0.30 2.70 16 29 H 0.12 2.03 7.86 -52.49 -0.41 1.62 16 30 H 0.42 3.96 8.96 -34.47 -0.31 3.65 16 31 H 0.17 2.47 7.50 -52.49 -0.39 2.08 16 32 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.40 1.56 8.86 -40.82 -0.36 1.20 16 34 H 0.40 1.39 8.85 -40.82 -0.36 1.03 16 35 H 0.15 1.23 7.84 -52.48 -0.41 0.82 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 340.75 15.07 5.13 5.13 Total: -1.00 -33.24 340.75 -7.99 -41.23 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.24 Total: 8.95 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -3.59 Total: -23.04 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.12 Total: -47.18 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.93 Total: -36.23 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.86 Total: 16.03 kcal Atomic # 16 Polarization: 35.72 SS G_CDS: -0.61 Total: 35.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.24 -7.99 -41.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.991 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds