Wall clock time and date at job start Tue Mar 31 2020 18:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48502 * 109.47344 * 269.99991 * 3 2 1 5 5 H 1.48495 * 109.47005 * 30.00474 * 3 2 1 6 6 H 1.48507 * 109.46822 * 150.00225 * 3 2 1 7 7 C 1.38623 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00060 * 359.97438 * 7 2 1 9 9 O 1.34810 * 119.99919 * 180.02562 * 7 2 1 10 10 C 1.35795 * 116.99934 * 184.95343 * 9 7 2 11 11 C 1.38894 * 119.99619 * 5.77716 * 10 9 7 12 12 C 1.38014 * 120.00887 * 180.02562 * 11 10 9 13 13 C 1.38943 * 119.99239 * 359.97438 * 12 11 10 14 14 N 1.39780 * 120.00510 * 179.97438 * 13 12 11 15 15 S 1.65600 * 120.00013 * 74.31086 * 14 13 12 16 16 O 1.42097 * 106.40254 * 307.22735 * 15 14 13 17 17 O 1.42102 * 106.40063 * 174.30710 * 15 14 13 18 18 C 1.76196 * 107.22091 * 60.76906 * 15 14 13 19 19 C 1.38272 * 120.37771 * 264.13805 * 18 15 14 20 20 N 1.31862 * 120.93160 * 179.97438 * 19 18 15 21 21 C 1.31816 * 121.79366 * 359.97438 * 20 19 18 22 22 C 1.38893 * 120.66192 * 359.97438 * 21 20 19 23 23 N 1.39699 * 120.49427 * 180.02562 * 22 21 20 24 24 C 1.38499 * 120.38215 * 84.11274 * 18 15 14 25 25 C 1.38950 * 119.99059 * 0.25410 * 13 12 11 26 26 C 1.38016 * 119.99081 * 359.48841 * 25 13 12 27 27 H 0.97011 * 119.99769 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99874 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.00281 * 179.97438 * 12 11 10 30 30 H 0.96998 * 120.00053 * 254.30343 * 14 13 12 31 31 H 1.07997 * 119.53847 * 359.97438 * 19 18 15 32 32 H 1.08000 * 119.66558 * 180.02562 * 21 20 19 33 33 H 0.97004 * 119.99828 * 180.02562 * 23 22 21 34 34 H 0.97001 * 120.00345 * 0.02562 * 23 22 21 35 35 H 1.08003 * 120.81507 * 359.75197 * 24 18 15 36 36 H 1.08002 * 120.00555 * 179.74465 * 25 13 12 37 37 H 1.07999 * 119.99740 * 180.22536 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4474 2.6526 0.7001 6 1 3.5475 1.4400 0.7000 7 6 2.0089 -1.2005 -0.0005 8 1 1.4688 -2.1358 -0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9734 -2.4060 -0.1051 11 6 3.2223 -3.5530 -0.3271 12 6 3.8486 -4.7783 -0.4334 13 6 5.2306 -4.8643 -0.3188 14 7 5.8651 -6.1052 -0.4258 15 16 6.0214 -6.8302 -1.9064 16 8 4.7193 -6.8685 -2.4739 17 8 6.8150 -7.9912 -1.7028 18 6 6.9739 -5.7479 -2.9193 19 6 6.3486 -4.8643 -3.7796 20 7 7.0506 -4.0492 -4.5421 21 6 8.3686 -4.0391 -4.5188 22 6 9.0688 -4.8965 -3.6801 23 7 10.4655 -4.8825 -3.6578 24 6 8.3575 -5.7719 -2.8624 25 6 5.9814 -3.7173 -0.0919 26 6 5.3551 -2.4915 0.0090 27 1 -0.4850 0.8402 0.0004 28 1 2.1480 -3.4863 -0.4158 29 1 3.2644 -5.6702 -0.6056 30 1 6.2139 -6.5416 0.3671 31 1 5.2699 -4.8415 -3.8279 32 1 8.9092 -3.3566 -5.1578 33 1 10.9473 -5.4848 -3.0695 34 1 10.9536 -4.2705 -4.2307 35 1 8.8722 -6.4487 -2.1964 36 1 7.0553 -3.7844 0.0013 37 1 5.9389 -1.5995 0.1817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212608299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:09 Heat of formation + Delta-G solvation = -54.298812 kcal Electronic energy + Delta-G solvation = -25978.019825 eV Core-core repulsion = 22040.298200 eV Total energy + Delta-G solvation = -3937.721625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22795 -40.98037 -38.95610 -38.31941 -37.04700 -36.15181 -35.36977 -34.32154 -33.43122 -31.91053 -30.10715 -29.39158 -27.05916 -25.26916 -24.24233 -23.78406 -22.91674 -20.72634 -19.93644 -19.30420 -19.18203 -18.74807 -18.56261 -18.13151 -17.69812 -16.74267 -16.51266 -16.28668 -15.96038 -15.74536 -15.66347 -15.43398 -15.27696 -14.46839 -14.36556 -14.25773 -14.20926 -13.97134 -13.72516 -13.31487 -13.24112 -13.13217 -12.90434 -12.70785 -12.56748 -12.44093 -12.41798 -12.00229 -11.58460 -11.25580 -10.97308 -10.83509 -10.55837 -9.89753 -9.06033 -8.76712 -8.49345 -6.22121 -0.83013 -0.38031 0.28549 0.49185 0.50761 1.34227 1.38244 1.54024 1.86330 2.29157 2.46361 2.68483 2.73732 2.75618 3.05565 3.06909 3.28788 3.61683 3.70009 3.89649 4.06530 4.07046 4.11066 4.18649 4.34845 4.46647 4.65361 4.77291 4.83089 4.93529 5.17643 5.30291 5.37271 5.49418 5.56069 5.75599 5.80830 6.02474 6.27519 6.30805 6.81756 6.84372 6.90667 7.55007 8.61849 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.003524 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.226143 B = 7944.163103 C = 8964.698282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.400 4.400 8 H 0.084 0.916 9 O -0.236 6.236 10 C 0.135 3.865 11 C -0.228 4.228 12 C -0.061 4.061 13 C 0.049 3.951 14 N -1.034 6.034 15 S 2.713 3.287 16 O -0.978 6.978 17 O -0.971 6.971 18 C -0.675 4.675 19 C 0.119 3.881 20 N -0.479 5.479 21 C 0.071 3.929 22 C 0.158 3.842 23 N -0.849 5.849 24 C -0.066 4.066 25 C -0.050 4.050 26 C -0.181 4.181 27 H 0.285 0.715 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.435 0.565 31 H 0.154 0.846 32 H 0.187 0.813 33 H 0.414 0.586 34 H 0.416 0.584 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.508 -10.696 -4.190 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.476 4.476 8 H 0.101 0.899 9 O -0.142 6.142 10 C 0.085 3.915 11 C -0.248 4.248 12 C -0.082 4.082 13 C -0.046 4.046 14 N -0.792 5.792 15 S 2.804 3.196 16 O -0.968 6.968 17 O -0.961 6.961 18 C -0.766 4.766 19 C -0.041 4.041 20 N -0.188 5.188 21 C -0.093 4.093 22 C 0.048 3.952 23 N -0.390 5.390 24 C -0.097 4.097 25 C -0.071 4.071 26 C -0.200 4.200 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.151 0.849 30 H 0.276 0.724 31 H 0.172 0.828 32 H 0.204 0.796 33 H 0.245 0.755 34 H 0.247 0.753 35 H 0.189 0.811 36 H 0.179 0.821 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 23.572 -10.570 -5.126 26.337 hybrid contribution 0.446 0.460 0.619 0.891 sum 24.018 -10.110 -4.506 26.446 Atomic orbital electron populations 1.69746 1.07003 1.29687 1.49623 1.25293 0.95850 1.02239 0.95364 0.85231 0.79017 0.77352 0.79237 1.19296 1.19323 1.18133 1.20715 0.77994 0.96242 1.52638 0.89898 1.83536 1.21321 1.27235 1.82153 1.19745 0.93188 0.85019 0.93576 1.21170 1.00665 0.92830 1.10086 1.21293 0.94210 0.96953 0.95724 1.16804 0.89989 0.84819 1.13001 1.52476 1.72135 1.29591 1.24983 1.01422 0.73180 0.72456 0.72498 1.93577 1.39016 1.86207 1.78007 1.93561 1.71231 1.45807 1.85463 1.31417 1.08130 1.19306 1.17711 1.22224 1.00358 0.90258 0.91256 1.67630 1.08806 1.20989 1.21350 1.23166 0.89687 0.98335 0.98089 1.18802 0.87103 0.94569 0.94717 1.42305 1.00712 1.46434 1.49572 1.20974 0.91147 0.98361 0.99264 1.21188 1.00632 0.89579 0.95719 1.20412 0.90381 0.99552 1.09702 0.90522 0.86721 0.84885 0.72448 0.82835 0.79628 0.75524 0.75316 0.81119 0.82053 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.38 13.96 21.61 0.30 -54.08 16 2 C 0.01 0.65 5.49 84.82 0.47 1.12 16 3 Si 0.97 44.31 28.62 68.60 1.96 46.27 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.40 -22.97 9.90 67.91 0.67 -22.29 16 8 H 0.08 5.01 5.51 -2.91 -0.02 4.99 16 9 O -0.24 -12.26 8.58 -23.04 -0.20 -12.46 16 10 C 0.14 5.96 6.65 22.59 0.15 6.11 16 11 C -0.23 -9.72 9.13 22.37 0.20 -9.52 16 12 C -0.06 -2.13 9.32 22.39 0.21 -1.92 16 13 C 0.05 1.38 5.77 38.21 0.22 1.60 16 14 N -1.03 -22.04 5.70 -51.26 -0.29 -22.33 16 15 S 2.71 66.17 5.71 -56.49 -0.32 65.85 16 16 O -0.98 -31.22 16.22 -128.00 -2.08 -33.29 16 17 O -0.97 -24.85 17.52 -128.00 -2.24 -27.09 16 18 C -0.68 -15.68 5.83 22.34 0.13 -15.55 16 19 C 0.12 3.32 10.69 84.70 0.91 4.22 16 20 N -0.48 -12.77 10.35 -195.29 -2.02 -14.79 16 21 C 0.07 1.31 11.06 84.85 0.94 2.25 16 22 C 0.16 2.33 6.79 38.30 0.26 2.59 16 23 N -0.85 -5.03 9.10 -51.12 -0.47 -5.50 16 24 C -0.07 -1.14 9.52 22.59 0.22 -0.92 16 25 C -0.05 -1.36 9.96 22.39 0.22 -1.14 16 26 C -0.18 -6.22 9.98 22.38 0.22 -6.00 16 27 H 0.29 15.45 8.31 -92.70 -0.77 14.68 16 28 H 0.11 5.44 5.70 -2.91 -0.02 5.42 16 29 H 0.13 4.38 7.86 -2.91 -0.02 4.36 16 30 H 0.43 6.45 8.96 -96.75 -0.87 5.59 16 31 H 0.15 4.62 7.50 -2.91 -0.02 4.60 16 32 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.41 0.95 8.86 -92.71 -0.82 0.13 16 34 H 0.42 0.74 8.85 -92.71 -0.82 -0.09 16 35 H 0.17 2.00 7.84 -2.91 -0.02 1.98 16 36 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -76.75 340.75 -1.87 -78.61 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -1.33 Total: 18.26 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 4.82 Total: -39.45 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -2.48 Total: -96.70 kcal Atomic # 8 Polarization: -68.32 SS G_CDS: -4.52 Total: -72.84 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.96 Total: 46.27 kcal Atomic # 16 Polarization: 66.17 SS G_CDS: -0.32 Total: 65.85 kcal Total: -76.75 -1.87 -78.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.313 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds