Wall clock time and date at job start Tue Mar 31 2020 18:13:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86801 * 119.99742 * 2 1
4 4 H 1.48507 * 109.47226 * 240.00474 * 3 2 1
5 5 H 1.48498 * 109.47194 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.46776 * 120.00704 * 3 2 1
7 7 C 1.37874 * 120.00195 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99971 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99812 * 359.97438 * 7 2 1
10 10 N 1.46903 * 109.46747 * 180.02562 * 9 7 2
11 11 C 1.47964 * 110.99623 * 170.00161 * 10 9 7
12 12 C 1.53938 * 86.17898 * 222.41680 * 11 10 9
13 13 O 1.42901 * 113.73380 * 138.07849 * 12 11 10
14 14 C 1.35515 * 116.99801 * 150.00204 * 13 12 11
15 15 C 1.39456 * 120.46181 * 179.97438 * 14 13 12
16 16 C 1.38219 * 118.51521 * 180.02562 * 15 14 13
17 17 C 1.50700 * 120.36059 * 179.97438 * 16 15 14
18 18 F 1.39898 * 109.47358 * 89.99671 * 17 16 15
19 19 F 1.39898 * 109.47193 * 210.00142 * 17 16 15
20 20 F 1.39903 * 109.46801 * 330.00013 * 17 16 15
21 21 N 1.32437 * 119.27972 * 359.97438 * 16 15 14
22 22 C 1.32531 * 120.88012 * 0.02562 * 21 16 15
23 23 S 1.76203 * 119.19304 * 180.02562 * 22 21 16
24 24 N 1.32554 * 121.61116 * 359.71942 * 22 21 16
25 25 C 1.47959 * 111.00051 * 70.64376 * 10 9 7
26 26 H 0.97000 * 120.00608 * 359.97438 * 1 2 3
27 27 H 1.08995 * 109.47329 * 60.00457 * 9 7 2
28 28 H 1.09003 * 109.46936 * 300.00200 * 9 7 2
29 29 H 1.08996 * 113.76417 * 108.10123 * 11 10 9
30 30 H 1.09001 * 113.75972 * 336.72919 * 11 10 9
31 31 H 1.09006 * 113.73392 * 269.25600 * 12 11 10
32 32 H 1.07994 * 120.73887 * 359.97438 * 15 14 13
33 33 H 1.41001 * 99.99932 * 90.00251 * 23 22 21
34 34 H 1.08997 * 113.76309 * 23.26235 * 25 10 9
35 35 H 1.09000 * 113.75656 * 251.89374 * 25 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1028 1.6966 -1.2126
5 1 1.2840 2.7465 0.0006
6 1 3.1029 1.6963 1.2124
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 7 2.2057 -3.6156 -0.0005
11 6 1.5163 -4.9027 0.2393
12 6 2.6929 -5.2411 1.1724
13 8 2.2970 -5.8745 2.3907
14 6 3.1807 -6.7350 2.9521
15 6 2.8688 -7.3926 4.1417
16 6 3.8000 -8.2612 4.6792
17 6 3.5065 -8.9932 5.9633
18 9 2.8858 -10.2130 5.6734
19 9 4.7027 -9.2300 6.6490
20 9 2.6584 -8.2162 6.7597
21 7 4.9529 -8.4431 4.0534
22 6 5.2220 -7.8043 2.9238
23 16 6.7697 -8.0802 2.1281
24 7 4.3528 -6.9675 2.3749
25 6 2.8983 -3.7211 1.3027
26 1 -0.4851 0.8400 0.0004
27 1 0.6241 -2.5567 -0.8903
28 1 0.6247 -2.5570 0.8897
29 1 1.4577 -5.5406 -0.6426
30 1 0.5618 -4.8001 0.7557
31 1 3.5145 -5.7554 0.6737
32 1 1.9213 -7.2262 4.6324
33 1 6.4263 -9.1635 1.2935
34 1 2.3480 -3.2730 2.1300
35 1 3.9439 -3.4149 1.2704
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001225850001.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:13:22
Heat of formation + Delta-G solvation = -103.906777 kcal
Electronic energy + Delta-G solvation = -25786.773805 eV
Core-core repulsion = 21305.044277 eV
Total energy + Delta-G solvation = -4481.729528 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.066 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-51.39217 -48.90997 -48.84316 -42.74189 -41.15658 -38.91878 -35.30084 -35.02911
-33.44414 -31.17207 -28.79505 -27.43008 -26.91235 -26.26495 -24.71665 -23.39587
-21.26830 -21.01906 -20.02879 -19.77073 -19.24538 -18.72214 -18.56161 -17.95136
-17.41859 -17.15910 -16.89727 -16.34753 -16.30023 -15.89272 -15.71799 -15.60482
-15.44603 -15.26161 -14.97756 -14.96476 -14.74561 -14.27363 -13.96368 -13.79856
-13.78716 -13.39347 -12.94703 -12.80379 -12.63833 -12.34015 -12.25327 -12.13041
-11.63003 -11.51829 -11.26469 -11.12742 -10.66645 -10.52086 -9.74012 -9.41493
-8.25857 -6.36568 -1.08130 -0.63067 -0.11842 0.93900 1.26028 1.40098
1.42748 1.43109 1.51163 2.02043 2.16258 2.37587 2.57278 2.68574
3.06054 3.07951 3.09582 3.22225 3.28896 3.48507 3.66649 3.93728
3.99911 4.34397 4.44424 4.59190 4.65949 4.77828 4.87622 5.04691
5.15109 5.46668 5.71065 5.74413 6.02307 6.18870 6.29258 6.77407
7.33496 8.85574
Molecular weight = 335.07amu
Principal moments of inertia in cm(-1)
A = 0.016052 B = 0.002568 C = 0.002405
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1743.870464 B =10902.550830 C =11640.025594
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.005 3.995
3 Si 0.968 3.032
4 H -0.268 1.268
5 H -0.282 1.282
6 H -0.267 1.267
7 C -0.533 4.533
8 H 0.061 0.939
9 C 0.179 3.821
10 N -0.484 5.484
11 C 0.005 3.995
12 C 0.071 3.929
13 O -0.281 6.281
14 C 0.368 3.632
15 C -0.164 4.164
16 C 0.103 3.897
17 C 0.540 3.460
18 F -0.162 7.162
19 F -0.160 7.160
20 F -0.157 7.157
21 N -0.476 5.476
22 C 0.337 3.663
23 S -0.027 6.027
24 N -0.524 5.524
25 C 0.009 3.991
26 H 0.266 0.734
27 H 0.009 0.991
28 H -0.021 1.021
29 H 0.115 0.885
30 H 0.071 0.929
31 H 0.138 0.862
32 H 0.197 0.803
33 H 0.141 0.859
34 H 0.062 0.938
35 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.834 -21.577 10.385 25.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.194 4.194
3 Si 0.793 3.207
4 H -0.193 1.193
5 H -0.207 1.207
6 H -0.192 1.192
7 C -0.571 4.571
8 H 0.080 0.920
9 C 0.052 3.948
10 N -0.209 5.209
11 C -0.124 4.124
12 C 0.014 3.986
13 O -0.183 6.183
14 C 0.176 3.824
15 C -0.188 4.188
16 C -0.046 4.046
17 C 0.484 3.516
18 F -0.143 7.143
19 F -0.141 7.141
20 F -0.138 7.138
21 N -0.197 5.197
22 C -0.040 4.040
23 S 0.126 5.874
24 N -0.256 5.256
25 C -0.120 4.120
26 H 0.075 0.925
27 H 0.028 0.972
28 H -0.003 1.003
29 H 0.133 0.867
30 H 0.090 0.910
31 H 0.155 0.845
32 H 0.214 0.786
33 H 0.106 0.894
34 H 0.080 0.920
35 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 10.476 -21.358 9.123 25.478
hybrid contribution -2.439 0.653 0.955 2.699
sum 8.037 -20.704 10.078 24.389
Atomic orbital electron populations
1.70056 1.07676 1.28171 1.51232 1.25892 0.95757 1.03205 0.94508
0.85448 0.78218 0.77890 0.79180 1.19288 1.20705 1.19217 1.21368
0.93599 0.91152 1.50944 0.92042 1.19881 0.90816 0.89656 0.94472
1.68517 1.21085 1.02129 1.29119 1.24343 0.96151 0.93265 0.98606
1.24852 0.99831 0.91924 0.81956 1.86428 1.39257 1.52573 1.40081
1.20312 0.86449 0.86657 0.88973 1.21967 1.04160 0.97327 0.95360
1.21473 0.91635 0.95732 0.95749 1.17323 0.74961 0.77050 0.82250
1.93277 1.82819 1.44901 1.93347 1.93270 1.45693 1.94404 1.80731
1.93279 1.71050 1.74567 1.74953 1.68749 1.18209 1.23977 1.08741
1.24367 0.98007 0.90823 0.90843 1.87241 1.01235 1.47455 1.51464
1.68815 1.02837 1.18761 1.35155 1.24192 1.01525 0.93655 0.92606
0.92500 0.97248 1.00311 0.86720 0.91039 0.84466 0.78622 0.89398
0.91987 0.88897
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16
2 C 0.01 0.29 5.46 84.65 0.46 0.75 16
3 Si 0.97 43.69 29.54 68.60 2.03 45.71 16
4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16
5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16
6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
7 C -0.53 -29.83 8.84 25.60 0.23 -29.60 16
8 H 0.06 3.38 7.80 -2.91 -0.02 3.36 16
9 C 0.18 9.29 4.58 85.56 0.39 9.68 16
10 N -0.48 -20.19 6.25 -916.32 -5.73 -25.92 16
11 C 0.00 0.16 7.81 86.41 0.67 0.84 16
12 C 0.07 2.06 4.38 31.24 0.14 2.20 16
13 O -0.28 -7.52 10.15 -88.17 -0.90 -8.42 16
14 C 0.37 8.66 7.53 84.85 0.64 9.30 16
15 C -0.16 -3.08 9.47 22.56 0.21 -2.87 16
16 C 0.10 1.98 6.31 42.46 0.27 2.25 16
17 C 0.54 9.14 3.45 71.24 0.25 9.39 16
18 F -0.16 -2.71 17.30 44.97 0.78 -1.93 16
19 F -0.16 -3.00 17.07 44.97 0.77 -2.23 16
20 F -0.16 -2.46 16.52 44.97 0.74 -1.71 16
21 N -0.48 -10.37 10.05 -184.72 -1.86 -12.23 16
22 C 0.34 7.44 7.91 180.43 1.43 8.87 16
23 S -0.03 -0.46 26.15 -56.49 -1.48 -1.94 16
24 N -0.52 -12.63 8.71 -309.33 -2.69 -15.33 16
25 C 0.01 0.34 7.29 86.41 0.63 0.97 16
26 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16
27 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
28 H -0.02 -1.15 7.69 -2.39 -0.02 -1.17 16
29 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16
30 H 0.07 2.40 7.79 -2.39 -0.02 2.39 16
31 H 0.14 3.73 6.90 -2.38 -0.02 3.72 16
32 H 0.20 2.64 7.67 -2.91 -0.02 2.62 16
33 H 0.14 1.68 9.55 73.80 0.70 2.39 16
34 H 0.06 2.47 7.78 -2.39 -0.02 2.45 16
35 H 0.09 3.28 8.14 -2.39 -0.02 3.27 16
Total: -1.00 -63.13 337.31 -0.86 -63.99
By element:
Atomic # 1 Polarization: 1.29 SS G_CDS: 1.88 Total: 3.17 kcal
Atomic # 6 Polarization: 6.45 SS G_CDS: 5.32 Total: 11.77 kcal
Atomic # 7 Polarization: -98.41 SS G_CDS: -10.00 Total: -108.40 kcal
Atomic # 8 Polarization: -7.52 SS G_CDS: -0.90 Total: -8.42 kcal
Atomic # 9 Polarization: -8.17 SS G_CDS: 2.29 Total: -5.88 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal
Atomic # 16 Polarization: -0.46 SS G_CDS: -1.48 Total: -1.94 kcal
Total: -63.13 -0.86 -63.99 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001225850001.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.914 kcal
(2) G-P(sol) polarization free energy of solvation -63.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.049 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.907 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds