Wall clock time and date at job start Tue Mar 31 2020 18:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99929 * 2 1 4 4 H 1.48506 * 109.47240 * 240.00102 * 3 2 1 5 5 H 1.48497 * 109.47426 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47480 * 119.99977 * 3 2 1 7 7 C 1.37878 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00173 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99501 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.47958 * 110.99496 * 169.99959 * 10 9 7 12 12 C 1.53939 * 86.17947 * 222.41633 * 11 10 9 13 13 O 1.42894 * 113.73270 * 138.08130 * 12 11 10 14 14 C 1.35275 * 117.00203 * 150.00549 * 13 12 11 15 15 N 1.32330 * 120.83674 * 359.97438 * 14 13 12 16 16 C 1.32877 * 121.48673 * 180.02562 * 15 14 13 17 17 O 1.35422 * 118.61415 * 179.97438 * 16 15 14 18 18 N 1.31745 * 122.77512 * 0.26327 * 16 15 14 19 19 C 1.34088 * 120.36346 * 359.48003 * 18 16 15 20 20 C 1.40123 * 121.92662 * 180.22655 * 19 18 16 21 21 C 1.36442 * 119.58698 * 180.27202 * 20 19 18 22 22 Cl 1.73596 * 119.50056 * 180.02562 * 21 20 19 23 23 C 1.39358 * 120.99705 * 359.97438 * 21 20 19 24 24 C 1.36322 * 120.89048 * 0.02562 * 23 21 20 25 25 C 1.40017 * 119.53639 * 359.97438 * 24 23 21 26 26 C 1.47953 * 110.99744 * 70.64205 * 10 9 7 27 27 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47286 * 60.00162 * 9 7 2 29 29 H 1.08999 * 109.47369 * 300.00018 * 9 7 2 30 30 H 1.08999 * 113.75597 * 108.10368 * 11 10 9 31 31 H 1.08998 * 113.76442 * 336.73434 * 11 10 9 32 32 H 1.08999 * 113.73746 * 269.25858 * 12 11 10 33 33 H 0.96700 * 114.00112 * 90.00201 * 17 16 15 34 34 H 1.08004 * 120.20995 * 0.24875 * 20 19 18 35 35 H 1.07995 * 119.55014 * 180.02562 * 23 21 20 36 36 H 1.08004 * 120.22941 * 180.02562 * 24 23 21 37 37 H 1.08999 * 113.76675 * 23.26414 * 26 10 9 38 38 H 1.09000 * 113.75945 * 251.89914 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5164 -4.9027 0.2381 12 6 2.6938 -5.2417 1.1701 13 8 2.2988 -5.8756 2.3883 14 6 3.1813 -6.7348 2.9477 15 7 4.3537 -6.9681 2.3802 16 6 5.2300 -7.8098 2.9181 17 8 6.4124 -8.0055 2.2877 18 7 4.9947 -8.4662 4.0360 19 6 3.8376 -8.2954 4.6915 20 6 3.5552 -8.9730 5.8851 21 6 2.3597 -8.7675 6.5098 22 17 2.0124 -9.6075 7.9887 23 6 1.4136 -7.8927 5.9790 24 6 1.6570 -7.2180 4.8197 25 6 2.8742 -7.4065 4.1538 26 6 2.8992 -3.7217 1.3008 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 1.4572 -5.5402 -0.6441 31 1 0.5624 -4.8004 0.7551 32 1 3.5149 -5.7557 0.6706 33 1 7.1115 -7.3978 2.5653 34 1 4.2791 -9.6539 6.3079 35 1 0.4751 -7.7473 6.4931 36 1 0.9163 -6.5422 4.4181 37 1 2.3497 -3.2739 2.1288 38 1 3.9448 -3.4154 1.2679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227988420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:42 Heat of formation + Delta-G solvation = 32.603478 kcal Electronic energy + Delta-G solvation = -25290.559893 eV Core-core repulsion = 21354.562927 eV Total energy + Delta-G solvation = -3935.996966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89220 -39.96496 -38.93707 -37.93777 -37.08738 -36.14081 -33.72749 -32.91472 -31.55916 -30.26432 -29.27039 -25.94925 -25.61144 -24.73081 -24.38068 -22.80018 -21.83949 -20.09868 -19.84767 -18.76068 -18.03507 -17.89210 -16.69908 -16.31314 -16.13876 -15.76693 -15.38182 -15.11457 -14.68317 -14.54217 -14.34218 -14.26049 -13.45173 -13.26151 -12.88725 -12.73908 -12.63915 -12.26671 -12.20814 -12.04189 -11.75451 -11.61594 -11.50966 -11.20063 -11.13519 -10.94173 -10.75447 -10.38785 -10.05143 -9.82322 -9.59288 -9.42566 -9.28617 -8.58341 -8.56509 -8.00857 -6.13355 -4.16003 -0.14123 0.15052 1.43373 1.52999 2.30961 2.45123 2.86625 3.27525 3.31892 3.34769 3.54850 3.76857 4.13862 4.21232 4.34030 4.50604 4.53891 4.63534 4.68253 4.74944 5.05231 5.22865 5.28980 5.33326 5.53229 5.57236 5.69188 5.75216 5.87634 5.97579 6.02056 6.14355 6.24817 6.47424 6.50321 6.90858 7.06676 7.20742 7.50160 7.71648 7.74423 7.96706 8.28274 8.90525 9.48946 10.97760 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.002531 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.563614 B =11058.053639 C =12112.791817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.164 3.836 10 N -0.470 5.470 11 C 0.004 3.996 12 C 0.042 3.958 13 O -0.277 6.277 14 C 0.445 3.555 15 N -0.595 5.595 16 C 0.552 3.448 17 O -0.457 6.457 18 N -0.545 5.545 19 C 0.217 3.783 20 C -0.109 4.109 21 C 0.020 3.980 22 Cl -0.055 7.055 23 C -0.138 4.138 24 C -0.026 4.026 25 C -0.184 4.184 26 C 0.015 3.985 27 H 0.263 0.737 28 H 0.036 0.964 29 H 0.002 0.998 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.415 0.585 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.078 0.922 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 -18.730 13.680 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.038 3.962 10 N -0.195 5.195 11 C -0.124 4.124 12 C -0.013 4.013 13 O -0.176 6.176 14 C 0.246 3.754 15 N -0.339 5.339 16 C 0.246 3.754 17 O -0.260 6.260 18 N -0.277 5.277 19 C 0.090 3.910 20 C -0.129 4.129 21 C -0.010 4.010 22 Cl -0.026 7.026 23 C -0.157 4.157 24 C -0.046 4.046 25 C -0.190 4.190 26 C -0.114 4.114 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.020 0.980 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.275 0.725 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.096 0.904 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.838 -19.098 12.517 23.569 hybrid contribution -0.439 1.429 1.131 1.874 sum 5.399 -17.669 13.648 22.970 Atomic orbital electron populations 1.69934 1.06089 1.27127 1.50403 1.24984 0.94896 0.99430 0.95112 0.86528 0.79458 0.82519 0.78748 1.20050 1.21231 1.20209 1.21024 0.93437 0.89839 1.51017 0.91959 1.20236 0.90763 0.88289 0.96926 1.68648 1.21416 1.01955 1.27437 1.24283 0.95942 0.95026 0.97195 1.25352 1.00675 0.93626 0.81694 1.86359 1.39156 1.51753 1.40372 1.20017 0.85106 0.83768 0.86478 1.67408 1.04832 1.23878 1.37811 1.19728 0.86995 0.84847 0.83795 1.84678 1.17960 1.59949 1.63456 1.68357 1.21613 1.28269 1.09417 1.18186 0.87710 0.91773 0.93297 1.20427 0.96723 1.01636 0.94066 1.20749 0.95121 0.95721 0.89411 1.98404 1.94918 1.76459 1.32841 1.20825 1.00119 0.97593 0.97115 1.20951 0.94683 0.96188 0.92787 1.18759 0.99100 1.03795 0.97332 1.24195 1.01884 0.91011 0.94305 0.92691 0.94567 0.98021 0.89072 0.90650 0.85564 0.72476 0.82915 0.83717 0.82937 0.90417 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.15 8.84 -34.44 -0.30 -14.46 16 8 H 0.06 1.70 7.80 -52.49 -0.41 1.29 16 9 C 0.16 4.12 4.58 -4.97 -0.02 4.10 16 10 N -0.47 -9.77 6.25 -239.98 -1.50 -11.27 16 11 C 0.00 0.08 7.81 -2.77 -0.02 0.05 16 12 C 0.04 0.65 4.38 -25.79 -0.11 0.54 16 13 O -0.28 -3.94 9.50 -17.52 -0.17 -4.11 16 14 C 0.44 6.04 7.57 -16.12 -0.12 5.91 16 15 N -0.59 -8.32 8.76 -14.42 -0.13 -8.45 16 16 C 0.55 7.17 8.65 -91.26 -0.79 6.38 16 17 O -0.46 -4.90 13.63 -17.96 -0.24 -5.15 16 18 N -0.54 -7.03 10.48 -12.79 -0.13 -7.17 16 19 C 0.22 2.58 6.61 -84.86 -0.56 2.02 16 20 C -0.11 -1.05 9.75 -39.52 -0.39 -1.43 16 21 C 0.02 0.17 6.28 -39.81 -0.25 -0.08 16 22 Cl -0.06 -0.42 28.91 -51.86 -1.50 -1.92 16 23 C -0.14 -1.13 9.73 -39.85 -0.39 -1.51 16 24 C -0.03 -0.25 9.60 -39.60 -0.38 -0.63 16 25 C -0.18 -2.20 5.75 -106.70 -0.61 -2.81 16 26 C 0.02 0.28 7.29 -2.77 -0.02 0.26 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.00 0.05 7.69 -51.93 -0.40 -0.35 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.26 7.79 -51.93 -0.40 0.85 16 32 H 0.13 1.94 6.92 -51.93 -0.36 1.58 16 33 H 0.41 2.25 9.06 45.56 0.41 2.66 16 34 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.15 1.31 7.71 -52.48 -0.40 0.90 16 37 H 0.08 1.49 7.78 -51.93 -0.40 1.09 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -31.51 347.60 -10.00 -41.52 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.22 Total: 0.55 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -4.07 Total: -0.16 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -1.02 Total: -52.19 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.41 Total: -9.26 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.51 -10.00 -41.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227988420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.123 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds