Wall clock time and date at job start Tue Mar 31 2020 18:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99929 * 2 1 4 4 H 1.48506 * 109.47240 * 240.00102 * 3 2 1 5 5 H 1.48497 * 109.47426 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47480 * 119.99977 * 3 2 1 7 7 C 1.37878 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00173 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99501 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.47958 * 110.99496 * 169.99959 * 10 9 7 12 12 C 1.53939 * 86.17947 * 222.41633 * 11 10 9 13 13 O 1.42894 * 113.73270 * 138.08130 * 12 11 10 14 14 C 1.35275 * 117.00203 * 150.00549 * 13 12 11 15 15 N 1.32330 * 120.83674 * 359.97438 * 14 13 12 16 16 C 1.32877 * 121.48673 * 180.02562 * 15 14 13 17 17 O 1.35422 * 118.61415 * 179.97438 * 16 15 14 18 18 N 1.31745 * 122.77512 * 0.26327 * 16 15 14 19 19 C 1.34088 * 120.36346 * 359.48003 * 18 16 15 20 20 C 1.40123 * 121.92662 * 180.22655 * 19 18 16 21 21 C 1.36442 * 119.58698 * 180.27202 * 20 19 18 22 22 Cl 1.73596 * 119.50056 * 180.02562 * 21 20 19 23 23 C 1.39358 * 120.99705 * 359.97438 * 21 20 19 24 24 C 1.36322 * 120.89048 * 0.02562 * 23 21 20 25 25 C 1.40017 * 119.53639 * 359.97438 * 24 23 21 26 26 C 1.47953 * 110.99744 * 70.64205 * 10 9 7 27 27 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47286 * 60.00162 * 9 7 2 29 29 H 1.08999 * 109.47369 * 300.00018 * 9 7 2 30 30 H 1.08999 * 113.75597 * 108.10368 * 11 10 9 31 31 H 1.08998 * 113.76442 * 336.73434 * 11 10 9 32 32 H 1.08999 * 113.73746 * 269.25858 * 12 11 10 33 33 H 0.96700 * 114.00112 * 90.00201 * 17 16 15 34 34 H 1.08004 * 120.20995 * 0.24875 * 20 19 18 35 35 H 1.07995 * 119.55014 * 180.02562 * 23 21 20 36 36 H 1.08004 * 120.22941 * 180.02562 * 24 23 21 37 37 H 1.08999 * 113.76675 * 23.26414 * 26 10 9 38 38 H 1.09000 * 113.75945 * 251.89914 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5164 -4.9027 0.2381 12 6 2.6938 -5.2417 1.1701 13 8 2.2988 -5.8756 2.3883 14 6 3.1813 -6.7348 2.9477 15 7 4.3537 -6.9681 2.3802 16 6 5.2300 -7.8098 2.9181 17 8 6.4124 -8.0055 2.2877 18 7 4.9947 -8.4662 4.0360 19 6 3.8376 -8.2954 4.6915 20 6 3.5552 -8.9730 5.8851 21 6 2.3597 -8.7675 6.5098 22 17 2.0124 -9.6075 7.9887 23 6 1.4136 -7.8927 5.9790 24 6 1.6570 -7.2180 4.8197 25 6 2.8742 -7.4065 4.1538 26 6 2.8992 -3.7217 1.3008 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 1.4572 -5.5402 -0.6441 31 1 0.5624 -4.8004 0.7551 32 1 3.5149 -5.7557 0.6706 33 1 7.1115 -7.3978 2.5653 34 1 4.2791 -9.6539 6.3079 35 1 0.4751 -7.7473 6.4931 36 1 0.9163 -6.5422 4.4181 37 1 2.3497 -3.2739 2.1288 38 1 3.9448 -3.4154 1.2679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227988420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:41 Heat of formation + Delta-G solvation = 5.733139 kcal Electronic energy + Delta-G solvation = -25291.725078 eV Core-core repulsion = 21354.562927 eV Total energy + Delta-G solvation = -3937.162151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.82393 -41.25751 -39.74138 -39.16316 -37.86964 -36.95146 -35.09451 -34.57118 -32.41895 -31.30456 -30.83821 -27.55458 -27.04686 -25.84983 -25.35641 -23.88095 -23.28295 -21.27286 -20.98904 -19.78076 -19.02503 -18.78539 -18.56458 -17.49822 -17.09075 -16.95256 -16.56749 -16.25358 -16.14903 -15.86410 -15.32822 -15.25668 -14.80347 -14.34089 -13.99014 -13.95509 -13.79995 -13.71034 -13.42956 -13.34969 -13.02738 -12.84729 -12.63592 -12.43450 -12.32376 -12.20689 -12.19045 -11.96915 -11.61267 -11.30114 -11.17794 -10.67149 -10.56204 -10.20278 -9.72930 -9.41630 -8.25577 -6.36113 -1.00429 -0.69090 0.56964 0.83381 1.35651 1.40147 1.42582 1.50668 1.52806 1.97913 2.37702 2.66624 2.83478 3.06695 3.09908 3.26782 3.31078 3.35299 3.79592 3.81854 3.90073 3.98287 4.23673 4.32325 4.44552 4.54517 4.62230 4.65740 4.76857 4.86218 4.87562 4.93585 4.98737 5.08386 5.25749 5.47178 5.57187 5.71842 5.83378 6.03223 6.30154 6.48338 6.76823 6.77615 7.33724 8.85816 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.002531 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.563614 B =11058.053639 C =12112.791817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.179 3.821 10 N -0.486 5.486 11 C 0.006 3.994 12 C 0.070 3.930 13 O -0.278 6.278 14 C 0.431 3.569 15 N -0.610 5.610 16 C 0.542 3.458 17 O -0.461 6.461 18 N -0.551 5.551 19 C 0.200 3.800 20 C -0.110 4.110 21 C 0.024 3.976 22 Cl -0.041 7.041 23 C -0.122 4.122 24 C -0.034 4.034 25 C -0.190 4.190 26 C 0.012 3.988 27 H 0.266 0.734 28 H 0.009 0.991 29 H -0.018 1.018 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.434 0.566 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.065 0.935 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 -19.441 15.092 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.052 3.948 10 N -0.211 5.211 11 C -0.123 4.123 12 C 0.014 3.986 13 O -0.178 6.178 14 C 0.233 3.767 15 N -0.354 5.354 16 C 0.236 3.764 17 O -0.268 6.268 18 N -0.283 5.283 19 C 0.074 3.926 20 C -0.130 4.130 21 C -0.006 4.006 22 Cl -0.011 7.011 23 C -0.141 4.141 24 C -0.054 4.054 25 C -0.196 4.196 26 C -0.117 4.117 27 H 0.075 0.925 28 H 0.027 0.973 29 H -0.001 1.001 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.298 0.702 34 H 0.182 0.818 35 H 0.190 0.810 36 H 0.180 0.820 37 H 0.083 0.917 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.348 -19.834 13.950 25.066 hybrid contribution -0.596 1.504 0.829 1.818 sum 5.752 -18.330 14.779 24.239 Atomic orbital electron populations 1.70052 1.07631 1.28160 1.51185 1.25880 0.95764 1.03147 0.94535 0.85459 0.78234 0.77967 0.79130 1.19425 1.20655 1.19188 1.21355 0.93536 0.91171 1.50972 0.92165 1.19880 0.90794 0.89550 0.94552 1.68516 1.21154 1.02180 1.29209 1.24337 0.96206 0.93149 0.98558 1.24827 0.99844 0.91906 0.82029 1.86327 1.39397 1.52276 1.39801 1.20180 0.85178 0.84130 0.87192 1.67357 1.05206 1.24461 1.38384 1.19830 0.87498 0.84985 0.84044 1.84643 1.17930 1.60776 1.63496 1.68380 1.22202 1.28230 1.09450 1.18468 0.87619 0.92440 0.94092 1.20556 0.97453 1.01562 0.93390 1.20848 0.94732 0.95351 0.89634 1.98418 1.94765 1.76099 1.31843 1.21130 1.00768 0.95973 0.96192 1.21093 0.94120 0.96873 0.93307 1.18885 1.00066 1.03718 0.96887 1.24174 1.01437 0.93415 0.92664 0.92487 0.97299 1.00067 0.86985 0.90683 0.85001 0.70190 0.81791 0.81032 0.82043 0.91707 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.53 -29.76 8.84 25.60 0.23 -29.53 16 8 H 0.06 3.32 7.80 -2.91 -0.02 3.29 16 9 C 0.18 9.30 4.58 85.56 0.39 9.69 16 10 N -0.49 -20.50 6.25 -916.36 -5.73 -26.23 16 11 C 0.01 0.20 7.81 86.41 0.67 0.88 16 12 C 0.07 2.14 4.38 31.24 0.14 2.28 16 13 O -0.28 -7.78 9.50 -85.59 -0.81 -8.59 16 14 C 0.43 11.49 7.57 85.40 0.65 12.14 16 15 N -0.61 -16.80 8.76 -425.25 -3.72 -20.52 16 16 C 0.54 13.80 8.65 180.57 1.56 15.37 16 17 O -0.46 -9.59 13.63 -87.17 -1.19 -10.77 16 18 N -0.55 -13.84 10.48 -307.65 -3.22 -17.06 16 19 C 0.20 4.55 6.61 40.11 0.27 4.81 16 20 C -0.11 -1.93 9.75 22.31 0.22 -1.71 16 21 C 0.02 0.36 6.28 22.12 0.14 0.50 16 22 Cl -0.04 -0.51 28.91 -2.72 -0.08 -0.59 16 23 C -0.12 -1.68 9.73 22.09 0.21 -1.46 16 24 C -0.03 -0.59 9.60 22.25 0.21 -0.38 16 25 C -0.19 -4.37 5.75 -21.21 -0.12 -4.49 16 26 C 0.01 0.45 7.29 86.41 0.63 1.08 16 27 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H -0.02 -1.01 7.69 -2.39 -0.02 -1.03 16 30 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.07 2.52 7.79 -2.39 -0.02 2.50 16 32 H 0.13 3.95 6.92 -2.39 -0.02 3.93 16 33 H 0.43 4.37 9.06 -74.06 -0.67 3.70 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.16 2.52 7.71 -2.91 -0.02 2.49 16 37 H 0.06 2.56 7.78 -2.39 -0.02 2.54 16 38 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -67.86 347.60 -6.33 -74.19 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.46 Total: 8.68 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 5.66 Total: 9.94 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -12.39 Total: -118.42 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -2.00 Total: -19.37 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -67.86 -6.33 -74.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227988420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.923 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds