Wall clock time and date at job start Tue Mar 31 2020 18:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00129 * 2 1 4 4 H 1.48502 * 109.47366 * 270.00149 * 3 2 1 5 5 H 1.48505 * 109.47207 * 30.00095 * 3 2 1 6 6 H 1.48500 * 109.47199 * 150.00138 * 3 2 1 7 7 C 1.38818 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.47032 * 125.64898 * 0.04845 * 9 7 2 11 11 C 1.54321 * 107.26783 * 181.02069 * 10 9 7 12 12 C 1.55161 * 102.94550 * 22.19461 * 11 10 9 13 13 H 1.08992 * 111.03815 * 82.58389 * 12 11 10 14 14 O 1.42901 * 111.00220 * 206.42245 * 12 11 10 15 15 C 1.35272 * 116.99996 * 203.64288 * 14 12 11 16 16 N 1.32326 * 120.83592 * 0.28215 * 15 14 12 17 17 C 1.32889 * 121.47866 * 180.27225 * 16 15 14 18 18 O 1.35422 * 118.61066 * 179.70650 * 17 16 15 19 19 N 1.31738 * 122.77776 * 359.42785 * 17 16 15 20 20 C 1.34087 * 120.36717 * 0.27656 * 19 17 16 21 21 C 1.40126 * 121.93425 * 179.97438 * 20 19 17 22 22 C 1.36430 * 119.58706 * 180.02562 * 21 20 19 23 23 Cl 1.73595 * 119.50089 * 179.97438 * 22 21 20 24 24 C 1.39362 * 121.00025 * 359.95773 * 22 21 20 25 25 C 1.36323 * 120.89185 * 0.04944 * 24 22 21 26 26 C 1.40019 * 119.52973 * 359.97404 * 25 24 22 27 27 C 1.47424 * 125.64831 * 180.02562 * 9 7 2 28 28 H 0.96998 * 119.99852 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.87683 * 300.43683 * 10 9 7 30 30 H 1.08990 * 109.88306 * 61.44795 * 10 9 7 31 31 H 1.08996 * 110.72483 * 263.82391 * 11 10 9 32 32 H 1.09010 * 110.71757 * 140.55374 * 11 10 9 33 33 H 0.96700 * 114.00112 * 269.73333 * 18 17 16 34 34 H 1.07998 * 120.20550 * 0.05569 * 21 20 19 35 35 H 1.08004 * 119.55196 * 180.02562 * 24 22 21 36 36 H 1.07997 * 120.23090 * 179.97438 * 25 24 22 37 37 H 1.08997 * 110.36752 * 37.07489 * 27 9 7 38 38 H 1.09004 * 110.46373 * 274.79747 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0010 11 6 -0.4485 -4.0441 0.0254 12 6 0.8517 -4.6562 0.6105 13 1 0.8568 -4.5971 1.6988 14 8 1.0246 -6.0055 0.1727 15 6 1.7918 -6.8082 0.9453 16 7 2.3460 -6.3518 2.0569 17 6 3.1062 -7.1276 2.8225 18 8 3.6494 -6.5986 3.9446 19 7 3.3493 -8.3909 2.5390 20 6 2.8292 -8.9505 1.4370 21 6 3.0667 -10.2906 1.1036 22 6 2.5138 -10.8110 -0.0299 23 17 2.8101 -12.4713 -0.4412 24 6 1.7144 -10.0299 -0.8624 25 6 1.4637 -8.7229 -0.5671 26 6 2.0166 -8.1582 0.5888 27 6 1.9334 -3.7311 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5578 -2.0523 0.8826 30 1 -0.5544 -2.0819 -0.9015 31 1 -0.6315 -4.4179 -0.9819 32 1 -1.2988 -4.2516 0.6753 33 1 4.5222 -6.2042 3.8108 34 1 3.6833 -10.9079 1.7402 35 1 1.2880 -10.4659 -1.7538 36 1 0.8429 -8.1273 -1.2200 37 1 2.8325 -3.7406 0.6155 38 1 2.1683 -4.0431 -1.0182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227989527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:49 Heat of formation + Delta-G solvation = 23.780599 kcal Electronic energy + Delta-G solvation = -25751.320116 eV Core-core repulsion = 21814.940561 eV Total energy + Delta-G solvation = -3936.379554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.79040 -39.36907 -38.84159 -37.24506 -36.63829 -36.02164 -33.67679 -32.35024 -31.43540 -30.16635 -29.35036 -27.51325 -25.19537 -24.49195 -24.20033 -22.64434 -20.94974 -20.30034 -19.91376 -18.76236 -17.93086 -17.80134 -16.99088 -16.40487 -16.01526 -15.62273 -14.97693 -14.85325 -14.56836 -14.48087 -14.19315 -13.97378 -13.19029 -13.13539 -12.90948 -12.59690 -12.50552 -12.20943 -12.09153 -11.85035 -11.58175 -11.47263 -11.12873 -11.05693 -11.02902 -10.83245 -10.46257 -10.19779 -10.06027 -9.96862 -9.76091 -9.45591 -9.35912 -8.69209 -8.48600 -6.96052 -5.80267 -3.14891 -0.05945 0.23253 1.51696 1.57424 2.39481 2.56653 2.97335 3.36207 3.41286 3.43249 3.64309 3.87453 4.20652 4.29646 4.44324 4.56099 4.69918 4.83982 5.09430 5.13100 5.28841 5.38532 5.46628 5.55264 5.61347 5.62864 5.72471 5.76830 6.04422 6.09231 6.24451 6.31715 6.42016 6.49671 6.62693 7.08246 7.33054 7.43843 7.46112 7.71539 7.83205 8.14204 9.11541 9.71052 10.34509 11.31701 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020666 B = 0.002619 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.579328 B =10686.876130 C =11441.260475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.137 4.137 12 C 0.066 3.934 13 H 0.102 0.898 14 O -0.278 6.278 15 C 0.444 3.556 16 N -0.589 5.589 17 C 0.553 3.447 18 O -0.457 6.457 19 N -0.547 5.547 20 C 0.217 3.783 21 C -0.108 4.108 22 C 0.018 3.982 23 Cl -0.057 7.057 24 C -0.140 4.140 25 C -0.025 4.025 26 C -0.184 4.184 27 C 0.127 3.873 28 H 0.254 0.746 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.047 0.953 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -22.120 -0.237 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.054 3.946 11 C -0.176 4.176 12 C 0.010 3.990 13 H 0.120 0.880 14 O -0.177 6.177 15 C 0.246 3.754 16 N -0.334 5.334 17 C 0.248 3.752 18 O -0.260 6.260 19 N -0.279 5.279 20 C 0.090 3.910 21 C -0.128 4.128 22 C -0.011 4.011 23 Cl -0.028 7.028 24 C -0.159 4.159 25 C -0.046 4.046 26 C -0.190 4.190 27 C 0.000 4.000 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.276 0.724 34 H 0.170 0.830 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.065 0.935 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.389 -21.861 0.663 22.132 hybrid contribution 0.598 0.841 -0.642 1.215 sum 3.987 -21.020 0.021 21.395 Atomic orbital electron populations 1.69926 1.04933 1.25317 1.56765 1.24821 0.95775 0.97779 1.01883 0.86071 0.78597 0.83170 0.77620 1.21496 1.21558 1.20612 1.19044 0.90494 0.82024 1.44271 0.90278 1.44306 1.01606 0.99489 1.87356 1.21219 0.84515 0.86879 1.01963 1.23126 0.94483 0.99154 1.00794 1.24155 0.98941 0.75011 1.00889 0.87978 1.86216 1.60387 1.24871 1.46243 1.20007 0.83542 0.87068 0.84795 1.67529 1.17676 1.40785 1.07365 1.19765 0.87421 0.84087 0.83924 1.84670 1.38656 1.76905 1.25809 1.68357 1.28231 1.12484 1.18824 1.18185 0.90992 0.93255 0.88539 1.20418 1.02340 0.93046 0.97005 1.20725 0.98210 0.86564 0.95627 1.98400 1.94735 1.16470 1.93210 1.20796 1.00343 0.93843 1.00885 1.20928 0.95444 0.94295 0.93905 1.18747 1.06433 0.92901 1.00927 1.21791 0.94299 0.86424 0.97457 0.93550 0.92901 0.92976 0.91015 0.91122 0.72417 0.82972 0.83830 0.83016 0.93521 0.95624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.31 55.49 0.57 -25.88 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.07 3.39 -170.08 -0.58 -15.65 16 10 C 0.18 4.18 5.38 -3.06 -0.02 4.17 16 11 C -0.14 -2.46 6.69 -24.90 -0.17 -2.63 16 12 C 0.07 1.18 3.24 -24.59 -0.08 1.10 16 13 H 0.10 1.92 7.21 -51.93 -0.37 1.54 16 14 O -0.28 -4.29 9.29 -17.51 -0.16 -4.45 16 15 C 0.44 6.59 7.56 -16.13 -0.12 6.47 16 16 N -0.59 -9.31 8.89 -14.42 -0.13 -9.44 16 17 C 0.55 8.01 8.65 -91.25 -0.79 7.22 16 18 O -0.46 -5.69 13.63 -17.96 -0.24 -5.93 16 19 N -0.55 -7.62 10.48 -12.79 -0.13 -7.76 16 20 C 0.22 2.75 6.61 -84.86 -0.56 2.19 16 21 C -0.11 -1.10 9.75 -39.53 -0.39 -1.49 16 22 C 0.02 0.16 6.28 -39.82 -0.25 -0.09 16 23 Cl -0.06 -0.45 28.91 -51.86 -1.50 -1.95 16 24 C -0.14 -1.17 9.73 -39.85 -0.39 -1.56 16 25 C -0.03 -0.25 9.60 -39.60 -0.38 -0.63 16 26 C -0.18 -2.34 5.75 -106.70 -0.61 -2.95 16 27 C 0.13 2.64 6.97 -2.54 -0.02 2.62 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 30 H 0.05 1.34 7.50 -51.93 -0.39 0.95 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 33 H 0.42 3.01 9.06 45.56 0.41 3.43 16 34 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 36 H 0.15 1.30 7.71 -52.49 -0.40 0.90 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -31.55 341.45 -9.29 -40.84 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -3.22 Total: 0.67 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -4.02 Total: 7.68 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.27 Total: -58.73 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.41 Total: -10.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.55 -9.29 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227989527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.623 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds