Wall clock time and date at job start Tue Mar 31 2020 18:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00129 * 2 1 4 4 H 1.48502 * 109.47366 * 270.00149 * 3 2 1 5 5 H 1.48505 * 109.47207 * 30.00095 * 3 2 1 6 6 H 1.48500 * 109.47199 * 150.00138 * 3 2 1 7 7 C 1.38818 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.47032 * 125.64898 * 0.04845 * 9 7 2 11 11 C 1.54321 * 107.26783 * 181.02069 * 10 9 7 12 12 C 1.55161 * 102.94550 * 22.19461 * 11 10 9 13 13 H 1.08992 * 111.03815 * 82.58389 * 12 11 10 14 14 O 1.42901 * 111.00220 * 206.42245 * 12 11 10 15 15 C 1.35272 * 116.99996 * 203.64288 * 14 12 11 16 16 N 1.32326 * 120.83592 * 0.28215 * 15 14 12 17 17 C 1.32889 * 121.47866 * 180.27225 * 16 15 14 18 18 O 1.35422 * 118.61066 * 179.70650 * 17 16 15 19 19 N 1.31738 * 122.77776 * 359.42785 * 17 16 15 20 20 C 1.34087 * 120.36717 * 0.27656 * 19 17 16 21 21 C 1.40126 * 121.93425 * 179.97438 * 20 19 17 22 22 C 1.36430 * 119.58706 * 180.02562 * 21 20 19 23 23 Cl 1.73595 * 119.50089 * 179.97438 * 22 21 20 24 24 C 1.39362 * 121.00025 * 359.95773 * 22 21 20 25 25 C 1.36323 * 120.89185 * 0.04944 * 24 22 21 26 26 C 1.40019 * 119.52973 * 359.97404 * 25 24 22 27 27 C 1.47424 * 125.64831 * 180.02562 * 9 7 2 28 28 H 0.96998 * 119.99852 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.87683 * 300.43683 * 10 9 7 30 30 H 1.08990 * 109.88306 * 61.44795 * 10 9 7 31 31 H 1.08996 * 110.72483 * 263.82391 * 11 10 9 32 32 H 1.09010 * 110.71757 * 140.55374 * 11 10 9 33 33 H 0.96700 * 114.00112 * 269.73333 * 18 17 16 34 34 H 1.07998 * 120.20550 * 0.05569 * 21 20 19 35 35 H 1.08004 * 119.55196 * 180.02562 * 24 22 21 36 36 H 1.07997 * 120.23090 * 179.97438 * 25 24 22 37 37 H 1.08997 * 110.36752 * 37.07489 * 27 9 7 38 38 H 1.09004 * 110.46373 * 274.79747 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0010 11 6 -0.4485 -4.0441 0.0254 12 6 0.8517 -4.6562 0.6105 13 1 0.8568 -4.5971 1.6988 14 8 1.0246 -6.0055 0.1727 15 6 1.7918 -6.8082 0.9453 16 7 2.3460 -6.3518 2.0569 17 6 3.1062 -7.1276 2.8225 18 8 3.6494 -6.5986 3.9446 19 7 3.3493 -8.3909 2.5390 20 6 2.8292 -8.9505 1.4370 21 6 3.0667 -10.2906 1.1036 22 6 2.5138 -10.8110 -0.0299 23 17 2.8101 -12.4713 -0.4412 24 6 1.7144 -10.0299 -0.8624 25 6 1.4637 -8.7229 -0.5671 26 6 2.0166 -8.1582 0.5888 27 6 1.9334 -3.7311 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5578 -2.0523 0.8826 30 1 -0.5544 -2.0819 -0.9015 31 1 -0.6315 -4.4179 -0.9819 32 1 -1.2988 -4.2516 0.6753 33 1 4.5222 -6.2042 3.8108 34 1 3.6833 -10.9079 1.7402 35 1 1.2880 -10.4659 -1.7538 36 1 0.8429 -8.1273 -1.2200 37 1 2.8325 -3.7406 0.6155 38 1 2.1683 -4.0431 -1.0182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227989527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:48 Heat of formation + Delta-G solvation = -0.690535 kcal Electronic energy + Delta-G solvation = -25752.381264 eV Core-core repulsion = 21814.940561 eV Total energy + Delta-G solvation = -3937.440702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.79197 -40.62205 -39.72832 -38.45127 -37.80865 -36.94259 -34.84891 -34.14304 -32.36335 -31.31758 -30.90278 -29.16644 -26.77541 -25.71614 -25.28719 -23.58896 -22.38378 -22.06859 -20.94447 -19.85587 -19.06345 -18.92334 -18.66427 -17.51579 -16.90836 -16.77871 -16.60198 -16.08634 -15.95531 -15.78839 -15.28077 -15.04926 -14.72906 -14.21905 -14.02157 -13.94673 -13.80197 -13.47840 -13.40133 -13.05685 -12.96074 -12.73977 -12.44615 -12.29128 -12.25007 -12.19418 -12.05892 -11.98748 -11.83231 -11.60245 -11.24904 -10.74506 -10.52867 -10.18235 -9.39899 -8.98320 -7.89427 -5.26457 -0.97996 -0.67014 0.59598 0.85212 1.35930 1.46599 1.48086 1.55027 1.56891 1.99424 2.47127 2.69424 2.86967 3.28175 3.31585 3.36060 3.57419 3.68385 3.83323 3.84659 3.90314 3.95850 4.09508 4.33751 4.50972 4.61021 4.63840 4.77954 4.79080 4.90197 4.91425 4.98389 5.06650 5.29283 5.39776 5.56713 5.59497 5.69277 5.85087 6.14285 6.47295 6.79196 7.04771 7.69012 8.31904 9.21024 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020666 B = 0.002619 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.579328 B =10686.876130 C =11441.260475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.185 3.815 11 C -0.120 4.120 12 C 0.088 3.912 13 H 0.092 0.908 14 O -0.271 6.271 15 C 0.429 3.571 16 N -0.614 5.614 17 C 0.540 3.460 18 O -0.464 6.464 19 N -0.550 5.550 20 C 0.197 3.803 21 C -0.111 4.111 22 C 0.024 3.976 23 Cl -0.041 7.041 24 C -0.121 4.121 25 C -0.031 4.031 26 C -0.188 4.188 27 C 0.127 3.873 28 H 0.250 0.750 29 H 0.020 0.980 30 H 0.022 0.978 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.433 0.567 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.168 0.832 37 H 0.041 0.959 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 -24.479 -1.209 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.060 3.940 11 C -0.158 4.158 12 C 0.031 3.969 13 H 0.110 0.890 14 O -0.171 6.171 15 C 0.231 3.769 16 N -0.358 5.358 17 C 0.234 3.766 18 O -0.271 6.271 19 N -0.282 5.282 20 C 0.071 3.929 21 C -0.131 4.131 22 C -0.005 4.005 23 Cl -0.011 7.011 24 C -0.139 4.139 25 C -0.051 4.051 26 C -0.193 4.193 27 C 0.001 3.999 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.297 0.703 34 H 0.180 0.820 35 H 0.193 0.807 36 H 0.185 0.815 37 H 0.059 0.941 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.816 -24.273 -0.303 24.573 hybrid contribution 0.556 1.347 -0.381 1.507 sum 4.372 -22.925 -0.684 23.349 Atomic orbital electron populations 1.70134 1.06217 1.25609 1.57756 1.25654 0.96690 1.00980 1.02106 0.85055 0.77625 0.78908 0.77575 1.21066 1.21869 1.19499 1.19404 0.90976 0.83364 1.43774 0.90087 1.44575 1.02563 1.00520 1.87297 1.20971 0.83617 0.90414 0.98949 1.22932 0.95272 0.94971 1.02669 1.23605 0.97371 0.76038 0.99880 0.89026 1.86188 1.61146 1.23425 1.46309 1.20228 0.83942 0.87790 0.84897 1.67457 1.18417 1.41800 1.08136 1.19842 0.87983 0.84375 0.84363 1.84632 1.40032 1.77051 1.25385 1.68374 1.28264 1.12161 1.19437 1.18505 0.91619 0.94246 0.88497 1.20534 1.02649 0.92144 0.97725 1.20854 0.97328 0.87343 0.95014 1.98417 1.94569 1.15173 1.92972 1.21149 0.98621 0.92985 1.01152 1.21129 0.95663 0.95105 0.93211 1.18869 1.06687 0.91801 1.01951 1.21851 0.94949 0.85318 0.97748 0.94088 0.96159 0.95949 0.89031 0.88681 0.70348 0.81956 0.80702 0.81482 0.94092 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.08 10.31 21.65 0.22 -55.85 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 3 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.25 -13.80 10.28 84.04 0.86 -12.94 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -31.90 3.39 -692.01 -2.35 -34.25 16 10 C 0.19 8.90 5.38 86.73 0.47 9.37 16 11 C -0.12 -4.21 6.69 31.78 0.21 -4.00 16 12 C 0.09 3.09 3.24 31.98 0.10 3.19 16 13 H 0.09 3.45 7.21 -2.39 -0.02 3.43 16 14 O -0.27 -8.01 9.29 -85.56 -0.80 -8.80 16 15 C 0.43 12.43 7.56 85.40 0.65 13.07 16 16 N -0.61 -19.45 8.89 -425.25 -3.78 -23.23 16 17 C 0.54 15.66 8.65 180.57 1.56 17.22 16 18 O -0.46 -11.64 13.63 -87.17 -1.19 -12.83 16 19 N -0.55 -15.09 10.48 -307.64 -3.22 -18.31 16 20 C 0.20 4.75 6.61 40.11 0.27 5.02 16 21 C -0.11 -2.03 9.75 22.31 0.22 -1.81 16 22 C 0.02 0.36 6.28 22.12 0.14 0.50 16 23 Cl -0.04 -0.51 28.91 -2.72 -0.08 -0.58 16 24 C -0.12 -1.57 9.73 22.09 0.21 -1.35 16 25 C -0.03 -0.52 9.60 22.25 0.21 -0.31 16 26 C -0.19 -4.48 5.75 -21.21 -0.12 -4.60 16 27 C 0.13 5.31 6.97 86.85 0.61 5.92 16 28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.02 1.09 7.38 -2.39 -0.02 1.07 16 30 H 0.02 1.19 7.50 -2.39 -0.02 1.17 16 31 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 33 H 0.43 6.35 9.06 -74.06 -0.67 5.68 16 34 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.17 2.32 7.71 -2.91 -0.02 2.29 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -69.58 341.45 -2.86 -72.43 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.46 Total: 7.79 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 5.85 Total: 26.32 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -9.13 Total: -131.65 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.98 Total: -21.63 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.58 kcal Total: -69.58 -2.86 -72.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227989527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.741 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds