Wall clock time and date at job start Tue Mar 31 2020 18:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48498 * 109.46908 * 240.00161 * 3 2 1 5 5 H 1.48499 * 109.46602 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47308 * 120.00193 * 3 2 1 7 7 C 1.38820 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99866 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00197 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64889 * 0.04415 * 9 7 2 11 11 C 1.54321 * 107.27299 * 181.02524 * 10 9 7 12 12 C 1.55160 * 102.94273 * 22.19106 * 11 10 9 13 13 H 1.08991 * 111.04058 * 82.58728 * 12 11 10 14 14 O 1.42903 * 111.00049 * 206.42794 * 12 11 10 15 15 C 1.35281 * 116.99582 * 203.64456 * 14 12 11 16 16 N 1.32312 * 120.84123 * 359.95672 * 15 14 12 17 17 C 1.32885 * 121.47170 * 179.97438 * 16 15 14 18 18 O 1.35432 * 118.60448 * 180.02562 * 17 16 15 19 19 N 1.31720 * 122.79070 * 0.05197 * 17 16 15 20 20 C 1.34089 * 120.37252 * 359.97170 * 19 17 16 21 21 C 1.40183 * 121.93981 * 180.32024 * 20 19 17 22 22 C 1.36289 * 119.60798 * 180.23997 * 21 20 19 23 23 C 1.39328 * 121.02066 * 359.44812 * 22 21 20 24 24 Cl 1.73604 * 119.56281 * 180.28057 * 23 22 21 25 25 C 1.36460 * 120.87997 * 0.26608 * 23 22 21 26 26 C 1.39996 * 119.50471 * 0.02562 * 25 23 22 27 27 C 1.47425 * 125.65228 * 180.02562 * 9 7 2 28 28 H 0.97001 * 119.99000 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.87964 * 300.43647 * 10 9 7 30 30 H 1.08999 * 109.88454 * 61.44631 * 10 9 7 31 31 H 1.09000 * 110.71759 * 263.82769 * 11 10 9 32 32 H 1.09001 * 110.72213 * 140.55261 * 11 10 9 33 33 H 0.96701 * 114.00528 * 270.02602 * 18 17 16 34 34 H 1.07995 * 120.19469 * 359.97438 * 21 20 19 35 35 H 1.08002 * 119.49189 * 179.73678 * 22 21 20 36 36 H 1.08003 * 120.24882 * 180.02562 * 25 23 22 37 37 H 1.09005 * 110.36651 * 37.06246 * 27 9 7 38 38 H 1.09002 * 110.45901 * 274.79613 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0009 11 6 -0.4486 -4.0441 0.0256 12 6 0.8516 -4.6562 0.6105 13 1 0.8569 -4.5971 1.6988 14 8 1.0244 -6.0055 0.1727 15 6 1.7917 -6.8083 0.9453 16 7 2.3511 -6.3503 2.0534 17 6 3.1066 -7.1279 2.8218 18 8 3.6505 -6.5989 3.9437 19 7 3.3493 -8.3911 2.5384 20 6 2.8288 -8.9510 1.4368 21 6 3.0603 -10.2937 1.1072 22 6 2.5115 -10.8128 -0.0272 23 6 1.7130 -10.0324 -0.8607 24 17 1.0271 -10.7344 -2.2927 25 6 1.4628 -8.7236 -0.5664 26 6 2.0167 -8.1586 0.5885 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4849 0.8401 0.0004 29 1 -0.5578 -2.0523 0.8827 30 1 -0.5545 -2.0818 -0.9014 31 1 -0.6316 -4.4178 -0.9818 32 1 -1.2988 -4.2515 0.6755 33 1 4.5233 -6.2047 3.8096 34 1 3.6734 -10.9119 1.7460 35 1 2.6945 -11.8463 -0.2816 36 1 0.8420 -8.1281 -1.2194 37 1 2.8326 -3.7407 0.6154 38 1 2.1682 -4.0432 -1.0182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228912228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:29 Heat of formation + Delta-G solvation = 23.774033 kcal Electronic energy + Delta-G solvation = -25836.344393 eV Core-core repulsion = 21899.964554 eV Total energy + Delta-G solvation = -3936.379839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79509 -39.36123 -38.83648 -37.15724 -36.64819 -35.94081 -33.62159 -32.34464 -31.71677 -29.90980 -29.32888 -27.52068 -25.28151 -24.42357 -24.22355 -22.64723 -20.92718 -20.28897 -19.88940 -18.73432 -18.08135 -17.76376 -16.99216 -16.40404 -15.90343 -15.59275 -15.00156 -14.84329 -14.56337 -14.46567 -14.16241 -13.91722 -13.36810 -13.11224 -12.93942 -12.54098 -12.40839 -12.22722 -12.08688 -11.85352 -11.54462 -11.32575 -11.17385 -11.02979 -10.94480 -10.80683 -10.45437 -10.20702 -10.03599 -9.93898 -9.73343 -9.61433 -9.44999 -8.67910 -8.37394 -6.95192 -5.79203 -3.13910 -0.05797 0.24816 1.49769 1.74733 2.39213 2.56249 2.96442 3.37550 3.41669 3.42973 3.64160 3.84733 4.17795 4.24485 4.45205 4.52520 4.79237 4.84892 5.10374 5.15501 5.29465 5.40500 5.44620 5.47538 5.56616 5.63576 5.67610 5.78082 6.06551 6.10626 6.25271 6.32830 6.42627 6.50301 6.62429 7.08534 7.32695 7.44511 7.47071 7.72156 7.82826 8.15201 9.12433 9.71933 10.35540 11.32640 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002986 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.127805 B = 9374.882771 C =10669.994023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.066 3.934 13 H 0.102 0.898 14 O -0.278 6.278 15 C 0.445 3.555 16 N -0.588 5.588 17 C 0.552 3.448 18 O -0.457 6.457 19 N -0.547 5.547 20 C 0.209 3.791 21 C -0.100 4.100 22 C -0.060 4.060 23 C -0.060 4.060 24 Cl -0.062 7.062 25 C -0.031 4.031 26 C -0.176 4.176 27 C 0.128 3.872 28 H 0.255 0.745 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.047 0.953 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 -22.354 0.122 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.054 3.946 11 C -0.176 4.176 12 C 0.010 3.990 13 H 0.120 0.880 14 O -0.177 6.177 15 C 0.247 3.753 16 N -0.333 5.333 17 C 0.247 3.753 18 O -0.261 6.261 19 N -0.279 5.279 20 C 0.082 3.918 21 C -0.120 4.120 22 C -0.082 4.082 23 C -0.087 4.087 24 Cl -0.033 7.033 25 C -0.052 4.052 26 C -0.182 4.182 27 C 0.000 4.000 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.276 0.724 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.065 0.935 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.568 -21.997 0.918 22.303 hybrid contribution 0.488 0.957 -0.764 1.318 sum 4.056 -21.039 0.154 21.427 Atomic orbital electron populations 1.69923 1.04921 1.25415 1.56660 1.24820 0.95772 0.97754 1.01844 0.86147 0.78456 0.82874 0.77968 1.21083 1.21495 1.21045 1.19003 0.90475 0.82046 1.44443 0.90327 1.44296 1.01609 0.99478 1.87372 1.21219 0.84504 0.86864 1.01963 1.23130 0.94476 0.99158 1.00825 1.24158 0.98976 0.74975 1.00871 0.87971 1.86230 1.60324 1.24910 1.46228 1.19983 0.83536 0.86965 0.84843 1.67543 1.17681 1.40661 1.07371 1.19799 0.87450 0.84175 0.83889 1.84672 1.38634 1.76941 1.25824 1.68407 1.28067 1.12489 1.18907 1.18550 0.90791 0.94112 0.88354 1.20591 1.01560 0.92387 0.97418 1.20911 0.94133 1.00431 0.92680 1.20546 1.02044 0.94049 0.92078 1.98389 1.83634 1.84066 1.37238 1.20826 0.96370 0.93339 0.94686 1.18530 1.06444 0.92946 1.00295 1.21790 0.94284 0.86420 0.97462 0.93508 0.92893 0.92975 0.91000 0.91107 0.72429 0.83026 0.83723 0.83003 0.93513 0.95627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 10.31 55.49 0.57 -25.97 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.20 3.39 -170.08 -0.58 -15.77 16 10 C 0.18 4.23 5.38 -3.06 -0.02 4.21 16 11 C -0.14 -2.51 6.69 -24.90 -0.17 -2.68 16 12 C 0.07 1.20 3.24 -24.59 -0.08 1.12 16 13 H 0.10 1.94 7.22 -51.93 -0.37 1.56 16 14 O -0.28 -4.41 9.29 -17.53 -0.16 -4.57 16 15 C 0.45 6.72 7.57 -16.12 -0.12 6.60 16 16 N -0.59 -9.34 8.90 -14.41 -0.13 -9.47 16 17 C 0.55 7.94 8.65 -91.27 -0.79 7.15 16 18 O -0.46 -5.65 13.63 -17.99 -0.25 -5.89 16 19 N -0.55 -7.46 10.47 -12.78 -0.13 -7.59 16 20 C 0.21 2.57 6.61 -84.84 -0.56 2.01 16 21 C -0.10 -0.91 10.01 -39.55 -0.40 -1.30 16 22 C -0.06 -0.47 9.72 -39.88 -0.39 -0.86 16 23 C -0.06 -0.56 6.28 -39.82 -0.25 -0.81 16 24 Cl -0.06 -0.54 28.92 -51.86 -1.50 -2.04 16 25 C -0.03 -0.34 9.35 -39.56 -0.37 -0.71 16 26 C -0.18 -2.28 5.75 -106.70 -0.61 -2.89 16 27 C 0.13 2.68 6.97 -2.54 -0.02 2.66 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 1.37 7.38 -51.93 -0.38 0.99 16 30 H 0.05 1.35 7.50 -51.93 -0.39 0.96 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.42 2.98 9.06 45.56 0.41 3.39 16 34 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.15 1.59 7.71 -52.48 -0.40 1.19 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -31.76 341.46 -9.30 -41.06 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -3.22 Total: 0.61 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -4.02 Total: 7.70 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.27 Total: -58.80 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.41 Total: -10.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.76 -9.30 -41.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228912228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.832 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds