Wall clock time and date at job start Tue Mar 31 2020 18:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48498 * 109.46908 * 240.00161 * 3 2 1 5 5 H 1.48499 * 109.46602 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47308 * 120.00193 * 3 2 1 7 7 C 1.38820 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99866 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00197 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64889 * 0.04415 * 9 7 2 11 11 C 1.54321 * 107.27299 * 181.02524 * 10 9 7 12 12 C 1.55160 * 102.94273 * 22.19106 * 11 10 9 13 13 H 1.08991 * 111.04058 * 82.58728 * 12 11 10 14 14 O 1.42903 * 111.00049 * 206.42794 * 12 11 10 15 15 C 1.35281 * 116.99582 * 203.64456 * 14 12 11 16 16 N 1.32312 * 120.84123 * 359.95672 * 15 14 12 17 17 C 1.32885 * 121.47170 * 179.97438 * 16 15 14 18 18 O 1.35432 * 118.60448 * 180.02562 * 17 16 15 19 19 N 1.31720 * 122.79070 * 0.05197 * 17 16 15 20 20 C 1.34089 * 120.37252 * 359.97170 * 19 17 16 21 21 C 1.40183 * 121.93981 * 180.32024 * 20 19 17 22 22 C 1.36289 * 119.60798 * 180.23997 * 21 20 19 23 23 C 1.39328 * 121.02066 * 359.44812 * 22 21 20 24 24 Cl 1.73604 * 119.56281 * 180.28057 * 23 22 21 25 25 C 1.36460 * 120.87997 * 0.26608 * 23 22 21 26 26 C 1.39996 * 119.50471 * 0.02562 * 25 23 22 27 27 C 1.47425 * 125.65228 * 180.02562 * 9 7 2 28 28 H 0.97001 * 119.99000 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.87964 * 300.43647 * 10 9 7 30 30 H 1.08999 * 109.88454 * 61.44631 * 10 9 7 31 31 H 1.09000 * 110.71759 * 263.82769 * 11 10 9 32 32 H 1.09001 * 110.72213 * 140.55261 * 11 10 9 33 33 H 0.96701 * 114.00528 * 270.02602 * 18 17 16 34 34 H 1.07995 * 120.19469 * 359.97438 * 21 20 19 35 35 H 1.08002 * 119.49189 * 179.73678 * 22 21 20 36 36 H 1.08003 * 120.24882 * 180.02562 * 25 23 22 37 37 H 1.09005 * 110.36651 * 37.06246 * 27 9 7 38 38 H 1.09002 * 110.45901 * 274.79613 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0009 11 6 -0.4486 -4.0441 0.0256 12 6 0.8516 -4.6562 0.6105 13 1 0.8569 -4.5971 1.6988 14 8 1.0244 -6.0055 0.1727 15 6 1.7917 -6.8083 0.9453 16 7 2.3511 -6.3503 2.0534 17 6 3.1066 -7.1279 2.8218 18 8 3.6505 -6.5989 3.9437 19 7 3.3493 -8.3911 2.5384 20 6 2.8288 -8.9510 1.4368 21 6 3.0603 -10.2937 1.1072 22 6 2.5115 -10.8128 -0.0272 23 6 1.7130 -10.0324 -0.8607 24 17 1.0271 -10.7344 -2.2927 25 6 1.4628 -8.7236 -0.5664 26 6 2.0167 -8.1586 0.5885 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4849 0.8401 0.0004 29 1 -0.5578 -2.0523 0.8827 30 1 -0.5545 -2.0818 -0.9014 31 1 -0.6316 -4.4178 -0.9818 32 1 -1.2988 -4.2515 0.6755 33 1 4.5233 -6.2047 3.8096 34 1 3.6734 -10.9119 1.7460 35 1 2.6945 -11.8463 -0.2816 36 1 0.8420 -8.1281 -1.2194 37 1 2.8326 -3.7407 0.6154 38 1 2.1682 -4.0432 -1.0182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228912228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:28 Heat of formation + Delta-G solvation = -0.989220 kcal Electronic energy + Delta-G solvation = -25837.418208 eV Core-core repulsion = 21899.964554 eV Total energy + Delta-G solvation = -3937.453654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79786 -40.63516 -39.72110 -38.43939 -37.79651 -36.87127 -34.81364 -34.12661 -32.63288 -31.28585 -30.69063 -29.19505 -26.81227 -25.78227 -25.23942 -23.60445 -22.37885 -22.08566 -20.91606 -19.84434 -19.09642 -18.96864 -18.71294 -17.52404 -16.79733 -16.77764 -16.60234 -16.07186 -15.97339 -15.81784 -15.27427 -15.01283 -14.72754 -14.23334 -14.08894 -14.01674 -13.84152 -13.55231 -13.16918 -13.05775 -12.97121 -12.72585 -12.54206 -12.29314 -12.20663 -12.11063 -12.06434 -12.00709 -11.82482 -11.62416 -11.17397 -10.74457 -10.52560 -10.42500 -9.27776 -8.99510 -7.89768 -5.27241 -0.98909 -0.64052 0.57849 0.99081 1.35020 1.46174 1.49223 1.54688 1.55851 1.98604 2.46921 2.70204 2.85261 3.24412 3.29927 3.33865 3.55349 3.66674 3.77941 3.85265 3.92230 4.04175 4.08346 4.35598 4.48835 4.59651 4.68412 4.70217 4.75334 4.79656 4.88399 4.97072 5.06025 5.34819 5.38496 5.54793 5.59178 5.67731 5.83377 6.13167 6.47604 6.78917 7.03764 7.67965 8.31148 9.20448 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002986 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.127805 B = 9374.882771 C =10669.994023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.982 3.018 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.186 3.814 11 C -0.122 4.122 12 C 0.088 3.912 13 H 0.093 0.907 14 O -0.274 6.274 15 C 0.428 3.572 16 N -0.612 5.612 17 C 0.537 3.463 18 O -0.464 6.464 19 N -0.545 5.545 20 C 0.189 3.811 21 C -0.094 4.094 22 C -0.044 4.044 23 C -0.050 4.050 24 Cl -0.051 7.051 25 C -0.046 4.046 26 C -0.180 4.180 27 C 0.128 3.872 28 H 0.250 0.750 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.433 0.567 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.153 0.847 37 H 0.042 0.958 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -25.116 -0.307 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.809 3.191 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.061 3.939 11 C -0.160 4.160 12 C 0.032 3.968 13 H 0.111 0.889 14 O -0.175 6.175 15 C 0.230 3.770 16 N -0.357 5.357 17 C 0.232 3.768 18 O -0.271 6.271 19 N -0.277 5.277 20 C 0.063 3.937 21 C -0.112 4.112 22 C -0.065 4.065 23 C -0.077 4.077 24 Cl -0.022 7.022 25 C -0.067 4.067 26 C -0.185 4.185 27 C 0.002 3.998 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.297 0.703 34 H 0.195 0.805 35 H 0.200 0.800 36 H 0.171 0.829 37 H 0.060 0.940 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.497 -24.806 0.496 25.215 hybrid contribution 0.275 1.602 -0.683 1.764 sum 4.772 -23.204 -0.188 23.690 Atomic orbital electron populations 1.70137 1.06233 1.25701 1.57574 1.25669 0.96695 1.01003 1.01957 0.85113 0.77186 0.78510 0.78269 1.20213 1.21757 1.20258 1.19383 0.91008 0.83366 1.44109 0.90054 1.44569 1.02541 1.00512 1.87333 1.20964 0.83644 0.90273 0.98980 1.22939 0.95352 0.95123 1.02559 1.23607 0.97364 0.75981 0.99897 0.88905 1.86202 1.61234 1.23558 1.46476 1.20206 0.84067 0.87714 0.85041 1.67463 1.18399 1.41750 1.08057 1.19897 0.88025 0.84548 0.84322 1.84635 1.40015 1.77098 1.25341 1.68449 1.27877 1.11993 1.19362 1.19025 0.91142 0.95451 0.88103 1.20908 1.01378 0.90977 0.97973 1.21304 0.92127 1.01790 0.91274 1.20730 1.01159 0.93566 0.92214 1.98405 1.83459 1.83696 1.36678 1.20845 0.97148 0.94291 0.94452 1.18595 1.06878 0.91912 1.01149 1.21837 0.94970 0.85337 0.97647 0.94069 0.96032 0.95977 0.89288 0.88648 0.70348 0.80515 0.80007 0.82940 0.93967 0.95321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.38 10.31 21.65 0.22 -56.16 16 2 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 3 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.25 -14.14 10.28 84.04 0.86 -13.27 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.62 -32.40 3.39 -692.01 -2.35 -34.75 16 10 C 0.19 9.10 5.38 86.73 0.47 9.57 16 11 C -0.12 -4.41 6.69 31.78 0.21 -4.20 16 12 C 0.09 3.21 3.24 31.98 0.10 3.31 16 13 H 0.09 3.57 7.22 -2.39 -0.02 3.55 16 14 O -0.27 -8.62 9.29 -85.66 -0.80 -9.41 16 15 C 0.43 12.83 7.57 85.41 0.65 13.48 16 16 N -0.61 -19.60 8.90 -425.23 -3.78 -23.38 16 17 C 0.54 15.38 8.65 180.58 1.56 16.94 16 18 O -0.46 -11.43 13.63 -87.28 -1.19 -12.62 16 19 N -0.55 -14.30 10.47 -307.62 -3.22 -17.52 16 20 C 0.19 4.33 6.61 40.12 0.27 4.60 16 21 C -0.09 -1.37 10.01 22.29 0.22 -1.15 16 22 C -0.04 -0.50 9.72 22.08 0.21 -0.29 16 23 C -0.05 -0.78 6.28 22.12 0.14 -0.64 16 24 Cl -0.05 -0.74 28.92 -2.72 -0.08 -0.82 16 25 C -0.05 -0.94 9.35 22.28 0.21 -0.73 16 26 C -0.18 -4.46 5.75 -21.21 -0.12 -4.58 16 27 C 0.13 5.47 6.97 86.85 0.61 6.08 16 28 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.02 1.17 7.38 -2.38 -0.02 1.15 16 30 H 0.02 1.19 7.50 -2.39 -0.02 1.17 16 31 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 32 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.43 6.17 9.06 -74.06 -0.67 5.50 16 34 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 36 H 0.15 3.00 7.71 -2.91 -0.02 2.98 16 37 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.45 341.46 -2.86 -73.31 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.46 Total: 7.63 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 5.85 Total: 26.20 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -9.13 Total: -131.81 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.99 Total: -22.04 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -70.45 -2.86 -73.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228912228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.320 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds