Wall clock time and date at job start Tue Mar 31 2020 18:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99713 * 2 1 4 4 H 1.48498 * 109.47208 * 5.28424 * 3 2 1 5 5 H 1.48495 * 109.47294 * 245.27689 * 3 2 1 6 6 H 1.48506 * 109.46738 * 125.28231 * 3 2 1 7 7 C 1.38810 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99626 * 345.67745 * 7 2 1 9 9 N 1.36927 * 119.99803 * 165.68553 * 7 2 1 10 10 C 1.47023 * 125.64961 * 348.92959 * 9 7 2 11 11 C 1.54325 * 107.27279 * 181.02848 * 10 9 7 12 12 C 1.55159 * 102.94427 * 22.18911 * 11 10 9 13 13 H 1.09001 * 111.00246 * 82.61013 * 12 11 10 14 14 O 1.42892 * 111.00801 * 206.42512 * 12 11 10 15 15 C 1.35274 * 117.00186 * 210.00007 * 14 12 11 16 16 N 1.32332 * 120.83720 * 0.02562 * 15 14 12 17 17 C 1.32885 * 121.47710 * 179.97438 * 16 15 14 18 18 O 1.35429 * 118.61107 * 179.97438 * 17 16 15 19 19 N 1.31739 * 122.77425 * 359.97438 * 17 16 15 20 20 C 1.34081 * 120.36324 * 0.02608 * 19 17 16 21 21 C 1.40162 * 121.92708 * 179.97438 * 20 19 17 22 22 C 1.36323 * 119.61924 * 180.02562 * 21 20 19 23 23 C 1.39171 * 121.05515 * 359.97438 * 22 21 20 24 24 C 1.36523 * 120.88949 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 120.25524 * 180.02562 * 24 23 22 26 26 C 1.40108 * 119.48013 * 359.79349 * 24 23 22 27 27 C 1.47428 * 125.64778 * 168.62786 * 9 7 2 28 28 H 0.96996 * 120.00316 * 174.92170 * 1 2 3 29 29 H 1.08997 * 109.88090 * 300.43924 * 10 9 7 30 30 H 1.08990 * 109.88238 * 61.45489 * 10 9 7 31 31 H 1.08992 * 110.72685 * 140.55490 * 11 10 9 32 32 H 1.09005 * 110.72013 * 263.82941 * 11 10 9 33 33 H 0.96694 * 113.99626 * 89.99536 * 18 17 16 34 34 H 1.07997 * 120.18566 * 0.03638 * 21 20 19 35 35 H 1.08003 * 119.47335 * 179.97438 * 22 21 20 36 36 H 1.07995 * 119.55840 * 180.02562 * 23 22 21 37 37 H 1.09003 * 110.36176 * 274.74190 * 27 9 7 38 38 H 1.08999 * 110.37046 * 37.06360 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2903 2.7435 0.1289 5 1 3.0047 1.7538 -1.2717 6 1 3.1980 1.6421 1.1430 7 6 2.0102 -1.2021 -0.0005 8 1 1.4954 -2.1230 0.2304 9 7 3.3476 -1.2204 -0.2937 10 6 4.1197 -0.0966 -0.8439 11 6 5.5709 -0.5866 -1.0327 12 6 5.4101 -2.1279 -1.1093 13 1 5.1307 -2.4420 -2.1150 14 8 6.6026 -2.7891 -0.6820 15 6 6.8713 -3.9920 -1.2395 16 7 6.0572 -4.5196 -2.1395 17 6 6.3090 -5.7000 -2.6956 18 8 5.4360 -6.1855 -3.6100 19 7 7.3720 -6.4177 -2.3949 20 6 8.2589 -5.9708 -1.4940 21 6 9.4004 -6.7074 -1.1492 22 6 10.2711 -6.2083 -0.2266 23 6 10.0458 -4.9763 0.3803 24 6 8.9450 -4.2318 0.0676 25 17 8.6805 -2.6968 0.8342 26 6 8.0330 -4.7140 -0.8805 27 6 4.2532 -2.3682 -0.1042 28 1 -0.4850 -0.8367 -0.0744 29 1 3.7023 0.2047 -1.8047 30 1 4.0970 0.7436 -0.1501 31 1 5.9923 -0.1963 -1.9590 32 1 6.1871 -0.3051 -0.1788 33 1 5.6350 -5.9262 -4.5200 34 1 9.5892 -7.6648 -1.6120 35 1 11.1497 -6.7780 0.0377 36 1 10.7517 -4.6037 1.1078 37 1 4.6330 -2.3870 0.9174 38 1 3.7378 -3.3004 -0.3354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230884710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:32 Heat of formation + Delta-G solvation = 42.579557 kcal Electronic energy + Delta-G solvation = -26356.753725 eV Core-core repulsion = 22421.189354 eV Total energy + Delta-G solvation = -3935.564370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84957 -39.47105 -38.87066 -37.18878 -36.92806 -36.10900 -33.61870 -32.50046 -31.61137 -30.15117 -29.61437 -28.29145 -25.21308 -24.52200 -23.84899 -22.54860 -21.29947 -20.59011 -19.98633 -18.84327 -18.09023 -17.94399 -17.46555 -16.38314 -16.16718 -15.52500 -15.38798 -15.20997 -14.87952 -14.65028 -14.07271 -13.86467 -13.54011 -13.00329 -12.87349 -12.72421 -12.53315 -12.40709 -12.32635 -12.14067 -11.72018 -11.60241 -11.48089 -11.15845 -10.96956 -10.85869 -10.55098 -10.08902 -10.04816 -9.61200 -9.53035 -9.36363 -9.02820 -8.75408 -8.42596 -7.09775 -6.33674 -3.26467 -0.13008 0.22757 1.39766 1.74950 2.39700 2.49811 2.88670 3.38144 3.47328 3.56561 3.69099 3.79843 4.13645 4.27052 4.41535 4.59682 4.70759 4.77116 4.86458 4.97247 5.01614 5.19859 5.32266 5.36659 5.46997 5.50579 5.56253 5.75592 5.79903 5.86468 6.03562 6.10768 6.25279 6.37162 6.44049 6.54878 6.64934 6.99366 7.25899 7.60582 7.76178 8.30529 9.00904 9.50265 10.16314 11.17174 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003684 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.714143 B = 7598.799632 C = 8832.557575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.020 4.020 3 Si 1.070 2.930 4 H -0.300 1.300 5 H -0.285 1.285 6 H -0.297 1.297 7 C -0.322 4.322 8 H 0.080 0.920 9 N -0.607 5.607 10 C 0.112 3.888 11 C -0.122 4.122 12 C 0.061 3.939 13 H 0.108 0.892 14 O -0.260 6.260 15 C 0.443 3.557 16 N -0.591 5.591 17 C 0.552 3.448 18 O -0.455 6.455 19 N -0.545 5.545 20 C 0.217 3.783 21 C -0.113 4.113 22 C -0.056 4.056 23 C -0.134 4.134 24 C 0.028 3.972 25 Cl -0.025 7.025 26 C -0.183 4.183 27 C 0.129 3.871 28 H 0.262 0.738 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.414 0.586 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.033 0.967 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.151 -11.079 -3.726 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.219 4.219 3 Si 0.904 3.096 4 H -0.228 1.228 5 H -0.213 1.213 6 H -0.226 1.226 7 C -0.449 4.449 8 H 0.097 0.903 9 N -0.336 5.336 10 C -0.012 4.012 11 C -0.160 4.160 12 C 0.005 3.995 13 H 0.126 0.874 14 O -0.159 6.159 15 C 0.244 3.756 16 N -0.335 5.335 17 C 0.247 3.753 18 O -0.258 6.258 19 N -0.277 5.277 20 C 0.090 3.910 21 C -0.132 4.132 22 C -0.077 4.077 23 C -0.153 4.153 24 C -0.001 4.001 25 Cl 0.005 6.995 26 C -0.189 4.189 27 C 0.002 3.998 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.274 0.726 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.051 0.949 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 23.998 -9.802 -3.640 26.177 hybrid contribution 0.561 -1.102 0.072 1.238 sum 24.559 -10.904 -3.568 27.106 Atomic orbital electron populations 1.70886 1.05642 1.29335 1.50914 1.25864 0.96488 1.00871 0.98725 0.83856 0.73243 0.76251 0.76295 1.22821 1.21291 1.22577 1.20184 0.81238 0.96236 1.47256 0.90258 1.44660 1.05731 1.08193 1.75016 1.22024 0.89154 0.92183 0.97844 1.22740 0.98469 0.92132 1.02684 1.24142 0.82293 0.92127 1.00975 0.87427 1.86530 1.43758 1.26041 1.59534 1.20007 0.86290 0.85268 0.83987 1.67509 1.34328 1.15691 1.15980 1.19811 0.83925 0.82873 0.88670 1.84708 1.48367 1.73201 1.19561 1.68454 1.04161 1.35543 1.19574 1.18458 0.93441 0.88954 0.90100 1.20736 0.92508 1.00804 0.99130 1.20984 0.98714 0.94313 0.93703 1.20880 0.97093 0.95161 1.02209 1.20584 0.95155 0.89716 0.94667 1.98445 1.95726 1.26357 1.78994 1.18570 0.97378 0.98435 1.04529 1.21832 0.89713 0.92763 0.95499 0.92755 0.93006 0.94726 0.90372 0.90240 0.72606 0.83386 0.83778 0.83907 0.94931 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.70 55.49 0.76 -28.66 16 2 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 3 Si 1.07 26.84 24.53 -169.99 -4.17 22.67 16 4 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 5 H -0.29 -6.46 5.43 56.52 0.31 -6.15 16 6 H -0.30 -7.19 6.84 56.52 0.39 -6.81 16 7 C -0.32 -9.41 10.56 -15.06 -0.16 -9.57 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.61 -15.21 3.32 -169.94 -0.56 -15.77 16 10 C 0.11 2.44 4.62 -3.06 -0.01 2.43 16 11 C -0.12 -2.06 6.68 -24.89 -0.17 -2.23 16 12 C 0.06 1.07 3.38 -24.46 -0.08 0.98 16 13 H 0.11 1.91 7.00 -51.93 -0.36 1.55 16 14 O -0.26 -4.05 6.90 -17.52 -0.12 -4.17 16 15 C 0.44 6.67 7.55 -16.13 -0.12 6.55 16 16 N -0.59 -9.27 8.79 -14.42 -0.13 -9.40 16 17 C 0.55 7.86 8.65 -91.26 -0.79 7.07 16 18 O -0.45 -5.54 13.63 -17.98 -0.25 -5.79 16 19 N -0.55 -7.36 10.48 -12.79 -0.13 -7.50 16 20 C 0.22 2.64 6.61 -84.85 -0.56 2.08 16 21 C -0.11 -0.96 10.01 -39.55 -0.40 -1.36 16 22 C -0.06 -0.36 9.94 -39.92 -0.40 -0.76 16 23 C -0.13 -1.05 9.74 -39.85 -0.39 -1.44 16 24 C 0.03 0.31 6.32 -39.50 -0.25 0.06 16 25 Cl -0.02 -0.29 26.06 -51.86 -1.35 -1.64 16 26 C -0.18 -2.38 5.75 -106.68 -0.61 -3.00 16 27 C 0.13 2.74 6.98 -2.41 -0.02 2.72 16 28 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 29 H 0.05 1.16 6.78 -51.93 -0.35 0.80 16 30 H 0.04 0.79 3.81 -51.93 -0.20 0.59 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.41 2.68 9.06 45.56 0.41 3.10 16 34 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -35.10 329.26 -8.19 -43.28 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -3.14 Total: -0.84 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -4.05 Total: 2.86 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.06 Total: -61.32 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.37 Total: -9.96 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.17 Total: 22.67 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.35 Total: -1.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.10 -8.19 -43.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230884710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.864 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds