Wall clock time and date at job start Tue Mar 31 2020 18:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99713 * 2 1 4 4 H 1.48498 * 109.47208 * 5.28424 * 3 2 1 5 5 H 1.48495 * 109.47294 * 245.27689 * 3 2 1 6 6 H 1.48506 * 109.46738 * 125.28231 * 3 2 1 7 7 C 1.38810 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99626 * 345.67745 * 7 2 1 9 9 N 1.36927 * 119.99803 * 165.68553 * 7 2 1 10 10 C 1.47023 * 125.64961 * 348.92959 * 9 7 2 11 11 C 1.54325 * 107.27279 * 181.02848 * 10 9 7 12 12 C 1.55159 * 102.94427 * 22.18911 * 11 10 9 13 13 H 1.09001 * 111.00246 * 82.61013 * 12 11 10 14 14 O 1.42892 * 111.00801 * 206.42512 * 12 11 10 15 15 C 1.35274 * 117.00186 * 210.00007 * 14 12 11 16 16 N 1.32332 * 120.83720 * 0.02562 * 15 14 12 17 17 C 1.32885 * 121.47710 * 179.97438 * 16 15 14 18 18 O 1.35429 * 118.61107 * 179.97438 * 17 16 15 19 19 N 1.31739 * 122.77425 * 359.97438 * 17 16 15 20 20 C 1.34081 * 120.36324 * 0.02608 * 19 17 16 21 21 C 1.40162 * 121.92708 * 179.97438 * 20 19 17 22 22 C 1.36323 * 119.61924 * 180.02562 * 21 20 19 23 23 C 1.39171 * 121.05515 * 359.97438 * 22 21 20 24 24 C 1.36523 * 120.88949 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 120.25524 * 180.02562 * 24 23 22 26 26 C 1.40108 * 119.48013 * 359.79349 * 24 23 22 27 27 C 1.47428 * 125.64778 * 168.62786 * 9 7 2 28 28 H 0.96996 * 120.00316 * 174.92170 * 1 2 3 29 29 H 1.08997 * 109.88090 * 300.43924 * 10 9 7 30 30 H 1.08990 * 109.88238 * 61.45489 * 10 9 7 31 31 H 1.08992 * 110.72685 * 140.55490 * 11 10 9 32 32 H 1.09005 * 110.72013 * 263.82941 * 11 10 9 33 33 H 0.96694 * 113.99626 * 89.99536 * 18 17 16 34 34 H 1.07997 * 120.18566 * 0.03638 * 21 20 19 35 35 H 1.08003 * 119.47335 * 179.97438 * 22 21 20 36 36 H 1.07995 * 119.55840 * 180.02562 * 23 22 21 37 37 H 1.09003 * 110.36176 * 274.74190 * 27 9 7 38 38 H 1.08999 * 110.37046 * 37.06360 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2903 2.7435 0.1289 5 1 3.0047 1.7538 -1.2717 6 1 3.1980 1.6421 1.1430 7 6 2.0102 -1.2021 -0.0005 8 1 1.4954 -2.1230 0.2304 9 7 3.3476 -1.2204 -0.2937 10 6 4.1197 -0.0966 -0.8439 11 6 5.5709 -0.5866 -1.0327 12 6 5.4101 -2.1279 -1.1093 13 1 5.1307 -2.4420 -2.1150 14 8 6.6026 -2.7891 -0.6820 15 6 6.8713 -3.9920 -1.2395 16 7 6.0572 -4.5196 -2.1395 17 6 6.3090 -5.7000 -2.6956 18 8 5.4360 -6.1855 -3.6100 19 7 7.3720 -6.4177 -2.3949 20 6 8.2589 -5.9708 -1.4940 21 6 9.4004 -6.7074 -1.1492 22 6 10.2711 -6.2083 -0.2266 23 6 10.0458 -4.9763 0.3803 24 6 8.9450 -4.2318 0.0676 25 17 8.6805 -2.6968 0.8342 26 6 8.0330 -4.7140 -0.8805 27 6 4.2532 -2.3682 -0.1042 28 1 -0.4850 -0.8367 -0.0744 29 1 3.7023 0.2047 -1.8047 30 1 4.0970 0.7436 -0.1501 31 1 5.9923 -0.1963 -1.9590 32 1 6.1871 -0.3051 -0.1788 33 1 5.6350 -5.9262 -4.5200 34 1 9.5892 -7.6648 -1.6120 35 1 11.1497 -6.7780 0.0377 36 1 10.7517 -4.6037 1.1078 37 1 4.6330 -2.3870 0.9174 38 1 3.7378 -3.3004 -0.3354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230884710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:31 Heat of formation + Delta-G solvation = 12.500632 kcal Electronic energy + Delta-G solvation = -26358.058045 eV Core-core repulsion = 22421.189354 eV Total energy + Delta-G solvation = -3936.868690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.80402 -40.71628 -39.71270 -38.69616 -37.79699 -37.04214 -34.88228 -34.34497 -32.52287 -31.50621 -30.85631 -29.91086 -26.49811 -25.56366 -25.31492 -23.44050 -22.84658 -22.29131 -20.95588 -19.99274 -19.58994 -19.06237 -18.78873 -17.56861 -17.17965 -16.92467 -16.60904 -16.27349 -15.92551 -15.67191 -15.56038 -15.31149 -15.01120 -14.39997 -14.22121 -13.96640 -13.73126 -13.62917 -13.28689 -13.21744 -13.13670 -13.07627 -12.66307 -12.47165 -12.32312 -12.03600 -11.88034 -11.58416 -11.46449 -11.22868 -11.12131 -10.75257 -10.57405 -10.41254 -9.27426 -9.19766 -8.72657 -5.57054 -0.99978 -0.61304 0.52546 0.96105 1.34622 1.38270 1.49641 1.62338 1.72378 1.95223 2.52383 2.69335 2.82283 3.06173 3.16625 3.29802 3.43486 3.52225 3.63217 3.65508 3.90823 4.02453 4.10229 4.19025 4.31478 4.38484 4.56560 4.64950 4.68458 4.73381 4.77916 4.92197 4.94591 5.05344 5.16995 5.42940 5.44611 5.61984 5.80943 6.01324 6.45451 6.73457 6.75926 7.31397 7.97308 8.80180 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003684 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.714143 B = 7598.799632 C = 8832.557575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.075 4.075 3 Si 1.109 2.891 4 H -0.309 1.309 5 H -0.242 1.242 6 H -0.281 1.281 7 C -0.318 4.318 8 H 0.041 0.959 9 N -0.627 5.627 10 C 0.101 3.899 11 C -0.107 4.107 12 C 0.081 3.919 13 H 0.102 0.898 14 O -0.256 6.256 15 C 0.422 3.578 16 N -0.616 5.616 17 C 0.535 3.465 18 O -0.465 6.465 19 N -0.546 5.546 20 C 0.193 3.807 21 C -0.112 4.112 22 C -0.033 4.033 23 C -0.111 4.111 24 C 0.002 3.998 25 Cl -0.038 7.038 26 C -0.191 4.191 27 C 0.127 3.873 28 H 0.247 0.753 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.433 0.567 34 H 0.170 0.830 35 H 0.194 0.806 36 H 0.174 0.826 37 H 0.032 0.968 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.125 -11.313 -3.759 32.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.268 4.268 3 Si 0.935 3.065 4 H -0.238 1.238 5 H -0.167 1.167 6 H -0.209 1.209 7 C -0.446 4.446 8 H 0.059 0.941 9 N -0.357 5.357 10 C -0.023 4.023 11 C -0.145 4.145 12 C 0.023 3.977 13 H 0.120 0.880 14 O -0.155 6.155 15 C 0.224 3.776 16 N -0.361 5.361 17 C 0.229 3.771 18 O -0.272 6.272 19 N -0.278 5.278 20 C 0.067 3.933 21 C -0.131 4.131 22 C -0.054 4.054 23 C -0.129 4.129 24 C -0.027 4.027 25 Cl -0.009 7.009 26 C -0.197 4.197 27 C 0.001 3.999 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.296 0.704 34 H 0.188 0.812 35 H 0.212 0.788 36 H 0.192 0.808 37 H 0.050 0.950 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 29.034 -10.092 -3.711 30.961 hybrid contribution -0.846 -1.312 0.139 1.568 sum 28.187 -11.404 -3.573 30.616 Atomic orbital electron populations 1.70999 1.06967 1.28487 1.53883 1.27292 0.96454 1.04651 0.98406 0.83437 0.72655 0.71523 0.78850 1.23840 1.16669 1.20907 1.20034 0.83560 0.94879 1.46173 0.94132 1.44676 1.04973 1.10641 1.75368 1.22221 0.91604 0.91263 0.97171 1.22707 0.95474 0.90943 1.05357 1.23661 0.81861 0.93093 0.99042 0.87985 1.86531 1.42347 1.26675 1.59994 1.20288 0.87360 0.85248 0.84689 1.67421 1.35219 1.16662 1.16755 1.19916 0.84675 0.82963 0.89500 1.84666 1.48483 1.73195 1.20841 1.68489 1.04084 1.35329 1.19872 1.18998 0.94530 0.89381 0.90387 1.21125 0.91281 1.01292 0.99409 1.21546 0.99118 0.93435 0.91301 1.21403 0.95676 0.94707 1.01149 1.20734 0.96386 0.90104 0.95487 1.98434 1.95906 1.27389 1.79150 1.18720 0.97064 0.98636 1.05306 1.21864 0.90575 0.90688 0.96757 0.94394 0.93310 0.94574 0.86657 0.88575 0.70353 0.81244 0.78843 0.80812 0.94991 0.95265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.38 13.70 21.65 0.30 -63.08 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 1.11 53.76 24.53 68.60 1.68 55.44 16 4 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 5 H -0.24 -10.03 5.43 99.48 0.54 -9.49 16 6 H -0.28 -12.84 6.84 99.48 0.68 -12.16 16 7 C -0.32 -19.38 10.56 84.03 0.89 -18.49 16 8 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 9 N -0.63 -31.89 3.32 -691.55 -2.30 -34.19 16 10 C 0.10 4.21 4.62 86.73 0.40 4.61 16 11 C -0.11 -3.32 6.68 31.78 0.21 -3.11 16 12 C 0.08 2.77 3.38 32.07 0.11 2.88 16 13 H 0.10 3.63 7.00 -2.39 -0.02 3.62 16 14 O -0.26 -7.82 6.90 -85.59 -0.59 -8.41 16 15 C 0.42 12.69 7.55 85.40 0.65 13.33 16 16 N -0.62 -19.78 8.79 -425.25 -3.74 -23.52 16 17 C 0.53 15.48 8.65 180.57 1.56 17.04 16 18 O -0.47 -11.63 13.63 -87.24 -1.19 -12.82 16 19 N -0.55 -14.43 10.48 -307.63 -3.22 -17.65 16 20 C 0.19 4.38 6.61 40.11 0.27 4.64 16 21 C -0.11 -1.48 10.01 22.29 0.22 -1.26 16 22 C -0.03 -0.25 9.94 22.05 0.22 -0.03 16 23 C -0.11 -1.23 9.74 22.09 0.22 -1.01 16 24 C 0.00 0.04 6.32 22.32 0.14 0.19 16 25 Cl -0.04 -0.83 26.06 -2.72 -0.07 -0.90 16 26 C -0.19 -4.75 5.75 -21.20 -0.12 -4.88 16 27 C 0.13 5.55 6.98 86.93 0.61 6.16 16 28 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 29 H 0.05 2.06 6.78 -2.39 -0.02 2.05 16 30 H 0.04 1.54 3.81 -2.39 -0.01 1.53 16 31 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 33 H 0.43 5.79 9.06 -74.06 -0.67 5.12 16 34 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 36 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 37 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -81.69 329.26 -3.07 -84.76 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.23 Total: 4.45 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 5.83 Total: 15.92 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -8.96 Total: -138.44 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.78 Total: -21.23 kcal Atomic # 14 Polarization: 53.76 SS G_CDS: 1.68 Total: 55.44 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.07 Total: -0.90 kcal Total: -81.69 -3.07 -84.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230884710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.261 kcal (2) G-P(sol) polarization free energy of solvation -81.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds