Wall clock time and date at job start Tue Mar 31 2020 19:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99374 * 2 1 4 4 H 1.48500 * 109.46866 * 269.99584 * 3 2 1 5 5 H 1.48497 * 109.47389 * 29.99911 * 3 2 1 6 6 H 1.48503 * 109.46677 * 149.99766 * 3 2 1 7 7 C 1.37874 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99542 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46967 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46584 * 179.97438 * 11 10 9 13 13 S 1.65600 * 119.99580 * 164.99530 * 12 11 10 14 14 O 1.42105 * 106.40538 * 311.46090 * 13 12 11 15 15 O 1.42103 * 106.39981 * 178.54135 * 13 12 11 16 16 C 1.76200 * 107.22008 * 65.00290 * 13 12 11 17 17 C 1.38262 * 119.94500 * 89.99224 * 16 13 12 18 18 C 1.38145 * 120.05938 * 180.02562 * 17 16 13 19 19 C 1.38731 * 119.93835 * 0.02562 * 18 17 16 20 20 O 1.35905 * 120.05264 * 180.02562 * 19 18 17 21 21 C 1.42905 * 116.99842 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.46886 * 299.99632 * 21 20 19 23 23 F 1.39898 * 109.47456 * 59.99851 * 21 20 19 24 24 C 1.38729 * 119.89194 * 0.27526 * 19 18 17 25 25 C 1.38146 * 119.94070 * 359.42621 * 24 19 18 26 26 H 0.96993 * 120.00325 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47495 * 59.99555 * 9 7 2 28 28 H 1.09000 * 109.47191 * 300.00015 * 9 7 2 29 29 H 1.08993 * 109.47068 * 59.99704 * 10 9 7 30 30 H 1.08999 * 109.46743 * 299.99445 * 10 9 7 31 31 H 1.08993 * 109.47581 * 59.99879 * 11 10 9 32 32 H 1.08999 * 109.46822 * 299.99257 * 11 10 9 33 33 H 0.97003 * 120.00342 * 345.00241 * 12 11 10 34 34 H 1.07999 * 119.97562 * 0.03264 * 17 16 13 35 35 H 1.07990 * 120.03151 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47103 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.03286 * 179.71870 * 24 19 18 38 38 H 1.08005 * 119.97194 * 180.27359 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 7 2.4327 -6.1005 -0.0007 13 16 1.9179 -7.6302 0.3698 14 8 1.1549 -7.5188 1.5635 15 8 3.0535 -8.4759 0.2494 16 6 0.7942 -8.1231 -0.8947 17 6 1.2641 -8.7748 -2.0199 18 6 0.3853 -9.1618 -3.0131 19 6 -0.9698 -8.8955 -2.8808 20 8 -1.8365 -9.2756 -3.8562 21 6 -3.2172 -8.9681 -3.6531 22 9 -3.6673 -9.5937 -2.4855 23 9 -3.3734 -7.5833 -3.5302 24 6 -1.4380 -8.2359 -1.7538 25 6 -0.5558 -7.8565 -0.7607 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8904 30 1 2.8721 -3.6043 -0.8895 31 1 0.8542 -5.0446 -0.8902 32 1 0.8537 -5.0451 0.8897 33 1 3.3646 -5.9417 -0.2181 34 1 2.3192 -8.9816 -2.1226 35 1 0.7529 -9.6704 -3.8919 36 1 -3.7979 -9.3256 -4.5034 37 1 -2.4918 -8.0234 -1.6506 38 1 -0.9204 -7.3469 0.1191 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259433394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:47 Heat of formation + Delta-G solvation = -205.377873 kcal Electronic energy + Delta-G solvation = -26249.934835 eV Core-core repulsion = 21854.972744 eV Total energy + Delta-G solvation = -4394.962091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83271 -47.81628 -40.44946 -37.93382 -37.23936 -35.98836 -35.82171 -33.24608 -31.53438 -30.94918 -30.85672 -26.74502 -26.40058 -23.52184 -23.17445 -22.97755 -20.61608 -19.58557 -19.46904 -18.68709 -18.39872 -17.95299 -17.20282 -16.59046 -16.51828 -15.86372 -15.24613 -15.14305 -14.87695 -14.60515 -14.52176 -14.44978 -14.37639 -14.12830 -13.98212 -13.77308 -13.39403 -12.70978 -12.64828 -12.54963 -12.34709 -12.17460 -12.04429 -11.95129 -11.55522 -11.47133 -11.05020 -10.92743 -10.76272 -10.55272 -9.94124 -9.48394 -9.47577 -9.29796 -9.20958 -9.09892 -8.37888 -6.02988 -4.05626 0.30836 0.57969 0.90321 1.96622 2.89717 2.96980 3.23064 3.30577 3.37168 3.40459 3.76044 3.76871 4.12096 4.19281 4.33126 4.43698 4.49461 4.83216 4.87464 5.13164 5.32847 5.33359 5.41754 5.53906 5.64987 5.71778 5.74879 5.91862 6.03613 6.07629 6.52870 6.55837 6.75073 6.94547 7.13894 7.61944 7.74544 7.95813 8.37579 9.00968 9.58717 11.08301 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.003006 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.646313 B = 9312.616211 C =11166.559533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.115 4.115 11 C 0.112 3.888 12 N -1.112 6.112 13 S 2.698 3.302 14 O -0.956 6.956 15 O -0.966 6.966 16 C -0.700 4.700 17 C 0.015 3.985 18 C -0.157 4.157 19 C 0.158 3.842 20 O -0.319 6.319 21 C 0.411 3.589 22 F -0.196 7.196 23 F -0.192 7.192 24 C -0.212 4.212 25 C 0.022 3.978 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.418 0.582 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.186 0.814 37 H 0.143 0.857 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -21.955 -8.903 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.155 4.155 11 C -0.014 4.014 12 N -0.874 5.874 13 S 2.786 3.214 14 O -0.946 6.946 15 O -0.956 6.956 16 C -0.786 4.786 17 C -0.004 4.004 18 C -0.177 4.177 19 C 0.113 3.887 20 O -0.236 6.236 21 C 0.321 3.679 22 F -0.178 7.178 23 F -0.174 7.174 24 C -0.231 4.231 25 C 0.002 3.998 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.253 0.747 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.202 0.798 37 H 0.161 0.839 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.647 -22.447 -8.283 24.374 hybrid contribution 0.040 1.287 -0.682 1.457 sum -4.607 -21.160 -8.965 23.438 Atomic orbital electron populations 1.69958 1.06048 1.26682 1.50685 1.25023 0.94859 0.99296 0.95270 0.86583 0.79852 0.83420 0.78064 1.20702 1.21222 1.19862 1.21209 0.93059 0.90931 1.50803 0.92601 1.19082 0.93948 0.91038 0.97620 1.21849 0.99632 0.92669 1.01318 1.21622 0.91346 0.86775 1.01611 1.55491 1.19461 1.24080 1.88339 1.01747 0.73281 0.72438 0.73895 1.93594 1.72544 1.86050 1.42387 1.93570 1.49431 1.65584 1.87057 1.31067 1.11097 1.17481 1.18988 1.20769 1.00217 0.89804 0.89582 1.20542 0.89547 1.05817 1.01760 1.19161 0.90040 0.92544 0.86910 1.86657 1.16913 1.76038 1.43983 1.23441 0.81909 0.75044 0.87531 1.93118 1.88914 1.82245 1.53522 1.93145 1.95077 1.32621 1.96577 1.21680 1.01868 1.04447 0.95093 1.20818 0.90730 0.91112 0.97106 0.92953 0.96336 0.96140 0.92303 0.92562 0.92132 0.90440 0.74724 0.83128 0.83826 0.79801 0.83908 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.12 -2.19 5.30 -26.73 -0.14 -2.33 16 11 C 0.11 1.75 6.22 -4.04 -0.03 1.72 16 12 N -1.11 -14.51 6.00 -10.61 -0.06 -14.58 16 13 S 2.70 35.94 5.74 -107.50 -0.62 35.32 16 14 O -0.96 -15.50 16.75 -57.17 -0.96 -16.46 16 15 O -0.97 -14.21 17.28 -57.17 -0.99 -15.20 16 16 C -0.70 -8.49 5.95 -39.56 -0.24 -8.73 16 17 C 0.02 0.16 9.51 -39.61 -0.38 -0.21 16 18 C -0.16 -1.56 9.99 -39.43 -0.39 -1.95 16 19 C 0.16 1.69 6.48 -39.22 -0.25 1.44 16 20 O -0.32 -2.78 10.43 -19.44 -0.20 -2.98 16 21 C 0.41 2.62 5.98 101.05 0.60 3.23 16 22 F -0.20 -1.59 15.60 2.25 0.04 -1.56 16 23 F -0.19 -1.72 15.57 2.25 0.04 -1.68 16 24 C -0.21 -2.43 8.26 -39.43 -0.33 -2.76 16 25 C 0.02 0.26 9.51 -39.61 -0.38 -0.11 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.24 7.75 -51.93 -0.40 0.83 16 33 H 0.42 4.69 8.65 -34.47 -0.30 4.40 16 34 H 0.15 1.29 7.61 -52.49 -0.40 0.89 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.19 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.14 1.52 5.10 -52.49 -0.27 1.25 16 38 H 0.15 1.70 7.61 -52.48 -0.40 1.30 16 LS Contribution 347.93 15.07 5.24 5.24 Total: -1.00 -35.26 347.93 -8.14 -43.41 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.27 Total: 0.37 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.08 Total: -22.53 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.67 Total: -40.28 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -2.15 Total: -34.64 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.07 Total: -3.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 35.94 SS G_CDS: -0.62 Total: 35.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.26 -8.14 -43.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259433394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.972 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds