Wall clock time and date at job start Tue Mar 31 2020 19:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99374 * 2 1 4 4 H 1.48500 * 109.46866 * 269.99584 * 3 2 1 5 5 H 1.48497 * 109.47389 * 29.99911 * 3 2 1 6 6 H 1.48503 * 109.46677 * 149.99766 * 3 2 1 7 7 C 1.37874 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99542 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46967 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46584 * 179.97438 * 11 10 9 13 13 S 1.65600 * 119.99580 * 164.99530 * 12 11 10 14 14 O 1.42105 * 106.40538 * 311.46090 * 13 12 11 15 15 O 1.42103 * 106.39981 * 178.54135 * 13 12 11 16 16 C 1.76200 * 107.22008 * 65.00290 * 13 12 11 17 17 C 1.38262 * 119.94500 * 89.99224 * 16 13 12 18 18 C 1.38145 * 120.05938 * 180.02562 * 17 16 13 19 19 C 1.38731 * 119.93835 * 0.02562 * 18 17 16 20 20 O 1.35905 * 120.05264 * 180.02562 * 19 18 17 21 21 C 1.42905 * 116.99842 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.46886 * 299.99632 * 21 20 19 23 23 F 1.39898 * 109.47456 * 59.99851 * 21 20 19 24 24 C 1.38729 * 119.89194 * 0.27526 * 19 18 17 25 25 C 1.38146 * 119.94070 * 359.42621 * 24 19 18 26 26 H 0.96993 * 120.00325 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47495 * 59.99555 * 9 7 2 28 28 H 1.09000 * 109.47191 * 300.00015 * 9 7 2 29 29 H 1.08993 * 109.47068 * 59.99704 * 10 9 7 30 30 H 1.08999 * 109.46743 * 299.99445 * 10 9 7 31 31 H 1.08993 * 109.47581 * 59.99879 * 11 10 9 32 32 H 1.08999 * 109.46822 * 299.99257 * 11 10 9 33 33 H 0.97003 * 120.00342 * 345.00241 * 12 11 10 34 34 H 1.07999 * 119.97562 * 0.03264 * 17 16 13 35 35 H 1.07990 * 120.03151 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47103 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.03286 * 179.71870 * 24 19 18 38 38 H 1.08005 * 119.97194 * 180.27359 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 7 2.4327 -6.1005 -0.0007 13 16 1.9179 -7.6302 0.3698 14 8 1.1549 -7.5188 1.5635 15 8 3.0535 -8.4759 0.2494 16 6 0.7942 -8.1231 -0.8947 17 6 1.2641 -8.7748 -2.0199 18 6 0.3853 -9.1618 -3.0131 19 6 -0.9698 -8.8955 -2.8808 20 8 -1.8365 -9.2756 -3.8562 21 6 -3.2172 -8.9681 -3.6531 22 9 -3.6673 -9.5937 -2.4855 23 9 -3.3734 -7.5833 -3.5302 24 6 -1.4380 -8.2359 -1.7538 25 6 -0.5558 -7.8565 -0.7607 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8904 30 1 2.8721 -3.6043 -0.8895 31 1 0.8542 -5.0446 -0.8902 32 1 0.8537 -5.0451 0.8897 33 1 3.3646 -5.9417 -0.2181 34 1 2.3192 -8.9816 -2.1226 35 1 0.7529 -9.6704 -3.8919 36 1 -3.7979 -9.3256 -4.5034 37 1 -2.4918 -8.0234 -1.6506 38 1 -0.9204 -7.3469 0.1191 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259433394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:46 Heat of formation + Delta-G solvation = -230.886894 kcal Electronic energy + Delta-G solvation = -26251.040989 eV Core-core repulsion = 21854.972744 eV Total energy + Delta-G solvation = -4396.068246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.41155 -48.41155 -41.20204 -38.68436 -38.40657 -37.37719 -36.99837 -35.15914 -32.63144 -32.35799 -31.75428 -28.20172 -27.33086 -24.79534 -24.31351 -23.93416 -22.23477 -20.59475 -20.23301 -19.38771 -18.98427 -18.89890 -18.55200 -18.25722 -17.33966 -17.06936 -16.48043 -16.21295 -16.01463 -15.84424 -15.66437 -15.52161 -15.07908 -14.83647 -14.74045 -14.55703 -14.30390 -14.11007 -14.04233 -13.81390 -13.44259 -13.32898 -13.24943 -13.20112 -13.15348 -12.78158 -12.52341 -12.30354 -12.24947 -12.05180 -11.66679 -11.38487 -11.14023 -10.52587 -10.46647 -10.31147 -10.04568 -8.17554 -6.27797 -0.70257 -0.35797 0.06722 1.39218 1.42586 1.43505 1.54429 1.90728 2.28006 2.43518 2.46943 2.71737 3.16388 3.22183 3.35826 3.58844 3.59742 3.64542 4.00299 4.04770 4.12147 4.26978 4.29012 4.49865 4.61811 4.68881 4.75096 4.87073 4.93248 4.99465 5.20746 5.24163 5.24739 5.56071 5.75120 5.77408 5.88551 6.09000 6.27332 6.89461 7.41315 8.94158 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.003006 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.646313 B = 9312.616211 C =11166.559533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.121 3.879 12 N -1.105 6.105 13 S 2.718 3.282 14 O -0.988 6.988 15 O -0.977 6.977 16 C -0.708 4.708 17 C 0.013 3.987 18 C -0.156 4.156 19 C 0.154 3.846 20 O -0.317 6.317 21 C 0.403 3.597 22 F -0.208 7.208 23 F -0.209 7.209 24 C -0.225 4.225 25 C 0.005 3.995 26 H 0.263 0.737 27 H -0.001 1.001 28 H -0.005 1.005 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.428 0.572 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.243 0.757 37 H 0.145 0.855 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -22.680 -10.500 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.017 4.017 10 C -0.143 4.143 11 C -0.005 4.005 12 N -0.867 5.867 13 S 2.809 3.191 14 O -0.979 6.979 15 O -0.968 6.968 16 C -0.796 4.796 17 C -0.006 4.006 18 C -0.175 4.175 19 C 0.109 3.891 20 O -0.234 6.234 21 C 0.314 3.686 22 F -0.190 7.190 23 F -0.191 7.191 24 C -0.244 4.244 25 C -0.015 4.015 26 H 0.071 0.929 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.265 0.735 34 H 0.189 0.811 35 H 0.191 0.809 36 H 0.258 0.742 37 H 0.163 0.837 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.691 -23.176 -9.864 25.457 hybrid contribution -0.321 1.440 -0.248 1.496 sum -4.013 -21.736 -10.111 24.306 Atomic orbital electron populations 1.70089 1.07727 1.27690 1.51792 1.25952 0.95739 1.03269 0.94893 0.85481 0.78678 0.78656 0.78427 1.19792 1.21035 1.18794 1.21702 0.93671 0.92299 1.50295 0.91954 1.18998 0.94522 0.92744 0.95455 1.21620 0.98527 0.92167 1.02023 1.21349 0.91308 0.85945 1.01946 1.55247 1.19741 1.23347 1.88412 1.00900 0.72754 0.71934 0.73464 1.93552 1.73173 1.86404 1.44727 1.93548 1.50186 1.65703 1.87329 1.30778 1.10533 1.18985 1.19349 1.21104 1.01520 0.89004 0.88994 1.20906 0.89100 1.05160 1.02378 1.19378 0.90977 0.91867 0.86890 1.86675 1.17811 1.75704 1.43235 1.24452 0.81280 0.74172 0.88685 1.93093 1.88891 1.82332 1.54666 1.93112 1.95056 1.34262 1.96698 1.21790 1.02005 1.05053 0.95543 1.20915 0.91155 0.91835 0.97554 0.92852 0.98238 0.98615 0.92096 0.91288 0.91124 0.91090 0.73535 0.81058 0.80917 0.74172 0.83700 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.10 -3.92 5.30 30.60 0.16 -3.76 16 11 C 0.12 3.74 6.22 86.38 0.54 4.28 16 12 N -1.11 -27.84 6.00 -187.49 -1.12 -28.96 16 13 S 2.72 71.06 5.74 -56.49 -0.32 70.73 16 14 O -0.99 -32.42 16.75 -128.00 -2.14 -34.56 16 15 O -0.98 -27.63 17.28 -128.00 -2.21 -29.85 16 16 C -0.71 -16.66 5.95 22.28 0.13 -16.53 16 17 C 0.01 0.25 9.51 22.25 0.21 0.46 16 18 C -0.16 -2.73 9.99 22.37 0.22 -2.51 16 19 C 0.15 3.07 6.48 22.51 0.15 3.21 16 20 O -0.32 -4.85 10.43 -92.49 -0.96 -5.82 16 21 C 0.40 4.35 5.98 113.37 0.68 5.03 16 22 F -0.21 -3.15 15.60 44.97 0.70 -2.44 16 23 F -0.21 -3.53 15.57 44.97 0.70 -2.83 16 24 C -0.22 -5.10 8.26 22.37 0.18 -4.91 16 25 C 0.00 0.12 9.51 22.25 0.21 0.33 16 26 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 2.30 7.75 -2.39 -0.02 2.29 16 33 H 0.43 8.97 8.65 -96.74 -0.84 8.13 16 34 H 0.17 2.50 7.61 -2.91 -0.02 2.47 16 35 H 0.17 1.93 8.06 -2.92 -0.02 1.90 16 36 H 0.24 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.15 3.11 5.10 -2.91 -0.01 3.09 16 38 H 0.15 3.51 7.61 -2.91 -0.02 3.49 16 Total: -1.00 -76.09 347.93 0.55 -75.54 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.27 Total: 10.79 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 3.33 Total: -42.55 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -0.84 Total: -84.70 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: -5.32 Total: -70.22 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.40 Total: -5.28 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 71.06 SS G_CDS: -0.32 Total: 70.73 kcal Total: -76.09 0.55 -75.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259433394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.344 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds