Wall clock time and date at job start Tue Mar 31 2020 19:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30838 * 125.90048 * 2 1 4 4 N 1.40082 * 108.20465 * 180.26324 * 3 2 1 5 5 C 1.46506 * 126.03566 * 179.69997 * 4 3 2 6 6 C 1.34948 * 107.92493 * 359.71450 * 4 3 2 7 7 C 1.50702 * 126.12431 * 179.97438 * 6 4 3 8 8 C 1.35316 * 107.74915 * 0.02562 * 6 4 3 9 9 S 1.76194 * 126.04197 * 179.97438 * 8 6 4 10 10 O 1.42096 * 106.40326 * 311.23620 * 9 8 6 11 11 O 1.42097 * 106.40058 * 178.31869 * 9 8 6 12 12 N 1.65597 * 107.21744 * 64.77860 * 9 8 6 13 13 C 1.38227 * 120.00253 * 76.98246 * 12 9 8 14 14 C 1.38993 * 119.99855 * 357.25962 * 13 12 9 15 15 H 1.07999 * 120.00055 * 316.25985 * 14 13 12 16 16 C 1.40818 * 119.99763 * 136.25725 * 14 13 12 17 17 N 1.30338 * 120.00145 * 354.37416 * 16 14 13 18 18 Si 1.86801 * 119.99724 * 174.37101 * 16 14 13 19 19 H 1.48494 * 109.47126 * 60.00138 * 18 16 14 20 20 H 1.48499 * 109.46847 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47099 * 300.00103 * 18 16 14 22 22 C 1.41154 * 120.00123 * 177.26049 * 13 12 9 23 23 C 1.43191 * 120.00165 * 172.53925 * 22 13 12 24 24 N 6.80285 * 84.99998 * 117.06073 * 2 1 3 25 25 C 1.43206 * 119.99756 * 352.54016 * 22 13 12 26 26 N 7.18954 * 108.23816 * 146.18160 * 2 1 3 27 27 H 1.09003 * 109.46948 * 269.24238 * 1 2 3 28 28 H 1.08999 * 109.47240 * 29.23961 * 1 2 3 29 29 H 1.09001 * 109.47154 * 149.24287 * 1 2 3 30 30 H 1.08996 * 109.46610 * 270.01711 * 5 4 3 31 31 H 1.08997 * 109.46858 * 30.02154 * 5 4 3 32 32 H 1.08998 * 109.46796 * 150.01943 * 5 4 3 33 33 H 1.08994 * 109.47295 * 270.02340 * 7 6 4 34 34 H 1.09005 * 109.47355 * 30.02694 * 7 6 4 35 35 H 1.09002 * 109.46807 * 150.02163 * 7 6 4 36 36 H 0.97005 * 120.00033 * 256.97987 * 12 9 8 37 37 H 0.96998 * 119.99571 * 185.03235 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0061 5 6 4.7900 1.5007 -0.0144 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5990 -0.0085 8 6 2.3271 -1.1331 0.0036 9 16 1.7808 -2.8082 0.0091 10 8 2.5056 -3.4700 -1.0185 11 8 0.3612 -2.7671 0.0560 12 7 2.2767 -3.4809 1.4387 13 6 1.5956 -3.1992 2.6081 14 6 0.5298 -2.3071 2.5939 15 1 0.6081 -1.3810 2.0438 16 6 -0.6520 -2.6109 3.2967 17 7 -0.7893 -3.7739 3.8689 18 14 -2.0229 -1.3470 3.4090 19 1 -2.4953 -1.0065 2.0430 20 1 -3.1495 -1.9075 4.1976 21 1 -1.5134 -0.1221 4.0763 22 6 1.9823 -3.8176 3.8166 23 6 1.3857 -3.4095 5.0526 24 7 0.9141 -3.0831 6.0351 25 6 2.9714 -4.8532 3.8064 26 7 3.7571 -5.6730 3.8004 27 1 -0.3633 -0.0136 1.0276 28 1 -0.3633 0.8967 -0.5020 29 1 -0.3633 -0.8831 -0.5256 30 1 5.0772 1.7135 -1.0441 31 1 4.5592 2.4342 0.4989 32 1 5.6122 0.9991 0.4959 33 1 5.1238 -1.8138 -1.0373 34 1 5.6540 -1.0902 0.5001 35 1 4.6103 -2.5321 0.5082 36 1 3.0452 -4.0726 1.4556 37 1 -1.6303 -4.0108 4.2902 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260113262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:35 Heat of formation + Delta-G solvation = 62.460256 kcal Electronic energy + Delta-G solvation = -27418.455726 eV Core-core repulsion = 23518.089905 eV Total energy + Delta-G solvation = -3900.365821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.38018 -37.57487 -36.67524 -35.36142 -34.91064 -34.62826 -34.23744 -33.29000 -32.32073 -29.64962 -29.45063 -27.42248 -26.94358 -25.57327 -22.00710 -21.24013 -19.71311 -19.68058 -18.28382 -17.94449 -17.09549 -16.77068 -16.13101 -15.95881 -15.45861 -15.14702 -14.56303 -13.96802 -13.63624 -13.49129 -13.41759 -13.32161 -13.02441 -12.73415 -12.65786 -12.43331 -12.21582 -12.07146 -12.03110 -12.01504 -11.80017 -11.73036 -11.43840 -11.40186 -11.31656 -11.17875 -11.07352 -10.96869 -10.79803 -10.60152 -10.26426 -10.20700 -9.41420 -9.13167 -9.03211 -7.25296 -7.08423 -5.27205 0.84453 1.57212 2.33102 2.40211 2.43094 2.95419 2.98542 3.06145 3.49852 3.71720 3.87018 4.16751 4.23431 4.27968 4.30909 4.49922 4.54298 4.70283 4.83822 4.92200 5.00243 5.14881 5.25960 5.35143 5.40414 5.57559 5.61630 5.70032 5.91626 5.95445 6.04921 6.24202 6.42729 6.61808 6.69020 6.81276 7.07539 7.36429 7.56384 7.79057 8.03509 8.17765 8.91767 9.43252 9.70709 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.006445 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.163886 B = 4343.104377 C = 5328.649575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.176 3.824 3 N -0.300 5.300 4 N -0.364 5.364 5 C 0.094 3.906 6 C 0.204 3.796 7 C -0.117 4.117 8 C -0.809 4.809 9 S 2.718 3.282 10 O -0.972 6.972 11 O -0.921 6.921 12 N -1.046 6.046 13 C 0.403 3.597 14 C -0.442 4.442 15 H 0.106 0.894 16 C 0.094 3.906 17 N -0.731 5.731 18 Si 0.915 3.085 19 H -0.247 1.247 20 H -0.271 1.271 21 H -0.256 1.256 22 C -0.253 4.253 23 C 0.359 3.641 24 N -0.534 5.534 25 C 0.302 3.698 26 N -0.532 5.532 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.411 0.589 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 9.643 -10.499 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.006 3.994 3 N -0.121 5.121 4 N -0.142 5.142 5 C -0.048 4.048 6 C 0.070 3.930 7 C -0.175 4.175 8 C -0.907 4.907 9 S 2.806 3.194 10 O -0.962 6.962 11 O -0.911 6.911 12 N -0.788 5.788 13 C 0.295 3.705 14 C -0.474 4.474 15 H 0.124 0.876 16 C -0.136 4.136 17 N -0.351 5.351 18 Si 0.737 3.263 19 H -0.170 1.170 20 H -0.195 1.195 21 H -0.180 1.180 22 C -0.273 4.273 23 C 0.050 3.950 24 N -0.216 5.216 25 C -0.005 4.005 26 N -0.215 5.215 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.245 0.755 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.349 9.857 -9.579 14.749 hybrid contribution 0.078 0.109 0.059 0.147 sum 5.427 9.966 -9.519 14.812 Atomic orbital electron populations 1.20801 0.85239 1.04804 1.05113 1.21870 0.96850 0.88015 0.92618 1.77380 0.85546 1.22095 1.27066 1.48813 1.06281 1.04061 1.55008 1.21968 0.83897 0.95257 1.03642 1.20825 0.95498 0.84974 0.91725 1.20861 0.93101 0.98459 1.05122 1.31324 0.99660 1.24911 1.34820 1.01365 0.74060 0.72447 0.71490 1.93559 1.74975 1.73756 1.53948 1.93598 1.26231 1.85873 1.85360 1.54070 1.43209 1.57315 1.24184 1.16694 0.83555 0.88723 0.81512 1.19381 0.96353 1.04438 1.27192 0.87599 1.25825 1.00062 0.96396 0.91276 1.69432 1.27024 1.19102 1.19566 0.86173 0.79022 0.80694 0.80401 1.17032 1.19511 1.17964 1.12580 1.13646 1.13677 0.87374 1.24139 0.89487 0.90921 0.90500 1.80991 1.14178 1.13467 1.12972 1.25459 0.91277 0.91114 0.92634 1.81065 1.16913 1.15167 1.08328 0.88864 0.90820 0.87220 0.90343 0.88812 0.89123 0.87951 0.89517 0.89177 0.75464 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.03 36.01 0.33 -1.18 16 2 C 0.18 2.85 6.58 -82.40 -0.54 2.31 16 3 N -0.30 -4.73 12.58 33.67 0.42 -4.30 16 4 N -0.36 -4.76 4.01 -63.88 -0.26 -5.01 16 5 C 0.09 0.72 11.27 59.85 0.67 1.39 16 6 C 0.20 2.78 6.93 -82.26 -0.57 2.21 16 7 C -0.12 -1.18 9.63 36.01 0.35 -0.83 16 8 C -0.81 -12.98 5.58 -40.01 -0.22 -13.21 16 9 S 2.72 47.30 4.90 -107.50 -0.53 46.78 16 10 O -0.97 -17.54 17.74 -57.18 -1.01 -18.55 16 11 O -0.92 -17.74 12.58 -57.18 -0.72 -18.45 16 12 N -1.05 -18.77 5.47 32.59 0.18 -18.59 16 13 C 0.40 8.43 6.21 -83.59 -0.52 7.91 16 14 C -0.44 -9.41 6.06 -38.33 -0.23 -9.64 16 15 H 0.11 2.09 3.91 -52.49 -0.21 1.88 16 16 C 0.09 2.06 4.55 -17.21 -0.08 1.99 16 17 N -0.73 -16.94 10.22 55.59 0.57 -16.37 16 18 Si 0.92 17.18 29.07 -169.99 -4.94 12.23 16 19 H -0.25 -4.28 7.11 56.52 0.40 -3.88 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 22 C -0.25 -5.70 5.30 -104.94 -0.56 -6.25 16 23 C 0.36 8.75 11.37 -22.43 -0.25 8.49 16 24 N -0.53 -13.47 18.39 41.90 0.77 -12.70 16 25 C 0.30 6.71 14.11 -22.48 -0.32 6.39 16 26 N -0.53 -12.02 18.53 41.82 0.78 -11.25 16 27 H 0.09 1.42 6.43 -51.93 -0.33 1.08 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.11 1.64 6.02 -51.93 -0.31 1.33 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.47 7.05 -51.93 -0.37 0.10 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.60 7.08 -51.93 -0.37 0.23 16 35 H 0.09 0.95 7.48 -51.93 -0.39 0.56 16 36 H 0.41 6.70 7.67 -34.47 -0.26 6.44 16 37 H 0.30 6.53 8.29 -40.82 -0.34 6.19 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -30.79 337.94 -4.66 -35.45 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -3.06 Total: 6.09 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.95 Total: -0.41 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: 2.46 Total: -68.22 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.73 Total: -37.01 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -4.94 Total: 12.23 kcal Atomic # 16 Polarization: 47.30 SS G_CDS: -0.53 Total: 46.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.79 -4.66 -35.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260113262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.909 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds