Wall clock time and date at job start Tue Mar 31 2020 19:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30838 * 125.90048 * 2 1 4 4 N 1.40082 * 108.20465 * 180.26324 * 3 2 1 5 5 C 1.46506 * 126.03566 * 179.69997 * 4 3 2 6 6 C 1.34948 * 107.92493 * 359.71450 * 4 3 2 7 7 C 1.50702 * 126.12431 * 179.97438 * 6 4 3 8 8 C 1.35316 * 107.74915 * 0.02562 * 6 4 3 9 9 S 1.76194 * 126.04197 * 179.97438 * 8 6 4 10 10 O 1.42096 * 106.40326 * 311.23620 * 9 8 6 11 11 O 1.42097 * 106.40058 * 178.31869 * 9 8 6 12 12 N 1.65597 * 107.21744 * 64.77860 * 9 8 6 13 13 C 1.38227 * 120.00253 * 76.98246 * 12 9 8 14 14 C 1.38993 * 119.99855 * 357.25962 * 13 12 9 15 15 H 1.07999 * 120.00055 * 316.25985 * 14 13 12 16 16 C 1.40818 * 119.99763 * 136.25725 * 14 13 12 17 17 N 1.30338 * 120.00145 * 354.37416 * 16 14 13 18 18 Si 1.86801 * 119.99724 * 174.37101 * 16 14 13 19 19 H 1.48494 * 109.47126 * 60.00138 * 18 16 14 20 20 H 1.48499 * 109.46847 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47099 * 300.00103 * 18 16 14 22 22 C 1.41154 * 120.00123 * 177.26049 * 13 12 9 23 23 C 1.43191 * 120.00165 * 172.53925 * 22 13 12 24 24 N 6.80285 * 84.99998 * 117.06073 * 2 1 3 25 25 C 1.43206 * 119.99756 * 352.54016 * 22 13 12 26 26 N 7.18954 * 108.23816 * 146.18160 * 2 1 3 27 27 H 1.09003 * 109.46948 * 269.24238 * 1 2 3 28 28 H 1.08999 * 109.47240 * 29.23961 * 1 2 3 29 29 H 1.09001 * 109.47154 * 149.24287 * 1 2 3 30 30 H 1.08996 * 109.46610 * 270.01711 * 5 4 3 31 31 H 1.08997 * 109.46858 * 30.02154 * 5 4 3 32 32 H 1.08998 * 109.46796 * 150.01943 * 5 4 3 33 33 H 1.08994 * 109.47295 * 270.02340 * 7 6 4 34 34 H 1.09005 * 109.47355 * 30.02694 * 7 6 4 35 35 H 1.09002 * 109.46807 * 150.02163 * 7 6 4 36 36 H 0.97005 * 120.00033 * 256.97987 * 12 9 8 37 37 H 0.96998 * 119.99571 * 185.03235 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0061 5 6 4.7900 1.5007 -0.0144 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5990 -0.0085 8 6 2.3271 -1.1331 0.0036 9 16 1.7808 -2.8082 0.0091 10 8 2.5056 -3.4700 -1.0185 11 8 0.3612 -2.7671 0.0560 12 7 2.2767 -3.4809 1.4387 13 6 1.5956 -3.1992 2.6081 14 6 0.5298 -2.3071 2.5939 15 1 0.6081 -1.3810 2.0438 16 6 -0.6520 -2.6109 3.2967 17 7 -0.7893 -3.7739 3.8689 18 14 -2.0229 -1.3470 3.4090 19 1 -2.4953 -1.0065 2.0430 20 1 -3.1495 -1.9075 4.1976 21 1 -1.5134 -0.1221 4.0763 22 6 1.9823 -3.8176 3.8166 23 6 1.3857 -3.4095 5.0526 24 7 0.9141 -3.0831 6.0351 25 6 2.9714 -4.8532 3.8064 26 7 3.7571 -5.6730 3.8004 27 1 -0.3633 -0.0136 1.0276 28 1 -0.3633 0.8967 -0.5020 29 1 -0.3633 -0.8831 -0.5256 30 1 5.0772 1.7135 -1.0441 31 1 4.5592 2.4342 0.4989 32 1 5.6122 0.9991 0.4959 33 1 5.1238 -1.8138 -1.0373 34 1 5.6540 -1.0902 0.5001 35 1 4.6103 -2.5321 0.5082 36 1 3.0452 -4.0726 1.4556 37 1 -1.6303 -4.0108 4.2902 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260113262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:34 Heat of formation + Delta-G solvation = 40.694567 kcal Electronic energy + Delta-G solvation = -27419.399557 eV Core-core repulsion = 23518.089905 eV Total energy + Delta-G solvation = -3901.309652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.43408 -39.20464 -38.13439 -36.81000 -36.65520 -36.42249 -35.26060 -34.96157 -33.26852 -31.24440 -30.50497 -28.74386 -28.28742 -26.47175 -23.64625 -22.38052 -21.25962 -20.71882 -19.93060 -19.43097 -18.37508 -18.26953 -17.56609 -16.98102 -16.70624 -16.54986 -15.97628 -14.99747 -14.97837 -14.81655 -14.53992 -14.37232 -14.25260 -14.11843 -13.80235 -13.72636 -13.69922 -13.50982 -13.43762 -13.31337 -13.17973 -13.13070 -13.05390 -12.82655 -12.78016 -12.70086 -12.51628 -12.50105 -12.37719 -12.08127 -11.86895 -11.47968 -11.04443 -10.20548 -10.09860 -8.93695 -8.77869 -7.00685 -0.52368 0.53815 0.75250 1.20114 1.41703 1.45511 1.51336 1.58353 2.07098 2.08568 2.18165 2.35704 2.66749 2.79441 2.90770 3.30665 3.39568 3.53717 3.67654 3.86220 3.92718 4.16511 4.29579 4.35572 4.40215 4.55720 4.62554 4.67600 4.70613 4.80950 4.92142 4.94295 5.04206 5.12690 5.39946 5.55356 5.76164 5.89878 6.17038 6.36636 6.46537 6.50843 7.14298 7.55647 8.03715 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.006445 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.163886 B = 4343.104377 C = 5328.649575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 N -0.320 5.320 4 N -0.359 5.359 5 C 0.079 3.921 6 C 0.209 3.791 7 C -0.126 4.126 8 C -0.834 4.834 9 S 2.730 3.270 10 O -0.980 6.980 11 O -0.942 6.942 12 N -1.041 6.041 13 C 0.411 3.589 14 C -0.450 4.450 15 H 0.120 0.880 16 C 0.064 3.936 17 N -0.760 5.760 18 Si 0.949 3.051 19 H -0.224 1.224 20 H -0.272 1.272 21 H -0.256 1.256 22 C -0.270 4.270 23 C 0.362 3.638 24 N -0.560 5.560 25 C 0.309 3.691 26 N -0.540 5.540 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.419 0.581 37 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 11.078 -11.655 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.008 4.008 3 N -0.141 5.141 4 N -0.136 5.136 5 C -0.060 4.060 6 C 0.073 3.927 7 C -0.183 4.183 8 C -0.935 4.935 9 S 2.821 3.179 10 O -0.970 6.970 11 O -0.933 6.933 12 N -0.782 5.782 13 C 0.302 3.698 14 C -0.481 4.481 15 H 0.138 0.862 16 C -0.163 4.163 17 N -0.381 5.381 18 Si 0.768 3.232 19 H -0.146 1.146 20 H -0.196 1.196 21 H -0.180 1.180 22 C -0.290 4.290 23 C 0.053 3.947 24 N -0.243 5.243 25 C 0.002 3.998 26 N -0.224 5.224 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.254 0.746 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.630 11.273 -10.751 16.930 hybrid contribution -0.207 -0.257 0.324 0.463 sum 6.423 11.016 -10.427 16.472 Atomic orbital electron populations 1.20848 0.85058 1.05649 1.04885 1.22051 0.97415 0.88231 0.93076 1.77299 0.87000 1.22349 1.27487 1.49188 1.06528 1.04501 1.53414 1.22478 0.82752 0.95148 1.05653 1.21309 0.95822 0.85669 0.89924 1.21129 0.92654 0.97837 1.06707 1.31019 1.01151 1.23522 1.37769 1.00731 0.73415 0.72823 0.70926 1.93543 1.74989 1.74582 1.53890 1.93567 1.27723 1.86517 1.85459 1.53935 1.43149 1.57663 1.23445 1.16676 0.83430 0.87878 0.81791 1.19710 0.96264 1.05036 1.27130 0.86209 1.26550 1.01856 0.97377 0.90523 1.69482 1.27595 1.20492 1.20559 0.85676 0.77086 0.78888 0.81572 1.14593 1.19628 1.17981 1.12655 1.14380 1.14575 0.87419 1.24460 0.89077 0.90497 0.90661 1.80963 1.15220 1.14499 1.13657 1.25376 0.91062 0.90894 0.92434 1.81061 1.17326 1.15438 1.08544 0.89468 0.88679 0.87818 0.88194 0.88314 0.86103 0.86143 0.85952 0.89901 0.74597 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.05 9.03 71.24 0.64 -2.41 16 2 C 0.16 5.04 6.58 43.10 0.28 5.32 16 3 N -0.32 -9.53 12.58 -47.38 -0.60 -10.12 16 4 N -0.36 -8.40 4.01 -356.02 -1.43 -9.83 16 5 C 0.08 0.92 11.27 127.77 1.44 2.36 16 6 C 0.21 5.20 6.93 41.41 0.29 5.48 16 7 C -0.13 -2.11 9.63 71.24 0.69 -1.42 16 8 C -0.83 -25.63 5.58 21.99 0.12 -25.51 16 9 S 2.73 92.99 4.90 -56.49 -0.28 92.71 16 10 O -0.98 -34.36 17.74 -128.00 -2.27 -36.63 16 11 O -0.94 -36.06 12.58 -128.00 -1.61 -37.67 16 12 N -1.04 -36.69 5.47 -50.80 -0.28 -36.96 16 13 C 0.41 17.08 6.21 39.03 0.24 17.32 16 14 C -0.45 -18.98 6.06 23.08 0.14 -18.84 16 15 H 0.12 4.65 3.91 -2.91 -0.01 4.64 16 16 C 0.06 2.78 4.55 85.55 0.39 3.17 16 17 N -0.76 -35.47 10.22 21.97 0.22 -35.25 16 18 Si 0.95 34.25 29.07 68.60 1.99 36.25 16 19 H -0.22 -7.20 7.11 99.48 0.71 -6.49 16 20 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 22 C -0.27 -12.14 5.30 -20.07 -0.11 -12.25 16 23 C 0.36 17.69 11.37 88.31 1.00 18.70 16 24 N -0.56 -28.47 18.39 19.02 0.35 -28.12 16 25 C 0.31 13.61 14.11 88.34 1.25 14.85 16 26 N -0.54 -24.06 18.53 19.00 0.35 -23.71 16 27 H 0.09 2.57 6.43 -2.39 -0.02 2.55 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.10 3.07 6.02 -2.39 -0.01 3.05 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.12 0.69 7.05 -2.39 -0.02 0.67 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.12 1.15 7.08 -2.38 -0.02 1.13 16 35 H 0.08 1.55 7.48 -2.39 -0.02 1.53 16 36 H 0.42 13.34 7.67 -96.74 -0.74 12.60 16 37 H 0.30 13.28 8.29 -92.71 -0.77 12.51 16 Total: -1.00 -65.58 337.94 3.28 -62.30 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.44 Total: 20.26 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.38 Total: 6.77 kcal Atomic # 7 Polarization: -142.62 SS G_CDS: -1.38 Total: -144.00 kcal Atomic # 8 Polarization: -70.42 SS G_CDS: -3.88 Total: -74.30 kcal Atomic # 14 Polarization: 34.25 SS G_CDS: 1.99 Total: 36.25 kcal Atomic # 16 Polarization: 92.99 SS G_CDS: -0.28 Total: 92.71 kcal Total: -65.58 3.28 -62.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260113262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.995 kcal (2) G-P(sol) polarization free energy of solvation -65.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds