Wall clock time and date at job start Tue Mar 31 2020 18:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48506 * 109.46565 * 269.99551 * 3 2 1 5 5 H 1.48497 * 109.47359 * 29.99459 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00204 * 3 2 1 7 7 C 1.38816 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99705 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99929 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.31006 * 120.00064 * 127.20518 * 11 10 9 13 13 C 1.50698 * 120.00030 * 7.74254 * 12 11 10 14 14 N 1.46504 * 109.47200 * 127.20406 * 13 12 11 15 15 C 1.34771 * 120.00109 * 180.02562 * 14 13 12 16 16 O 1.21690 * 119.99836 * 0.27653 * 15 14 13 17 17 C 1.46679 * 119.99985 * 179.97438 * 15 14 13 18 18 S 1.76212 * 126.13334 * 354.16347 * 17 15 14 19 19 C 1.70952 * 90.31684 * 179.97438 * 18 17 15 20 20 N 1.29429 * 110.38903 * 0.34527 * 19 18 17 21 21 C 1.30947 * 117.36477 * 359.72969 * 20 19 18 22 22 C 1.50703 * 122.90305 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.46805 * 241.81084 * 22 21 20 24 24 F 1.39895 * 109.46905 * 1.80865 * 22 21 20 25 25 F 1.39900 * 109.46906 * 121.81290 * 22 21 20 26 26 H 0.96995 * 119.99437 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00436 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47216 * 60.00216 * 10 9 7 29 29 H 1.09005 * 109.47264 * 300.00328 * 10 9 7 30 30 H 1.07998 * 119.99991 * 307.20397 * 11 10 9 31 31 H 1.08001 * 119.99993 * 187.74134 * 12 11 10 32 32 H 1.08999 * 109.46868 * 7.20731 * 13 12 11 33 33 H 1.08990 * 109.47328 * 247.20512 * 13 12 11 34 34 H 0.97005 * 119.99368 * 359.97438 * 14 13 12 35 35 H 1.07996 * 124.80089 * 180.09703 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.5937 -2.1957 0.0000 12 6 6.3630 -2.7505 0.9036 13 6 5.8014 -3.7963 1.8321 14 7 6.6421 -4.9952 1.7829 15 6 6.3304 -6.0682 2.5364 16 8 5.3478 -6.0431 3.2538 17 6 7.1717 -7.2686 2.4867 18 16 8.5338 -7.5387 1.4018 19 6 8.7909 -9.0809 2.0932 20 7 7.9175 -9.3107 3.0203 21 6 7.0364 -8.3730 3.2630 22 6 5.9651 -8.5085 4.3142 23 9 4.7060 -8.4502 3.7071 24 9 6.1095 -9.7348 4.9717 25 9 6.0853 -7.4661 5.2396 26 1 -0.4849 0.8400 -0.0004 27 1 3.8647 -0.3623 -0.0004 28 1 3.8484 -3.0428 -0.8898 29 1 3.8490 -3.0425 0.8902 30 1 6.0213 -1.5411 -0.7449 31 1 7.3997 -2.4585 0.9832 32 1 4.7878 -4.0505 1.5223 33 1 5.7835 -3.4067 2.8498 34 1 7.4227 -5.0168 1.2073 35 1 9.5693 -9.7678 1.7955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268553151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:11 Heat of formation + Delta-G solvation = -86.822864 kcal Electronic energy + Delta-G solvation = -25687.013486 eV Core-core repulsion = 21206.024772 eV Total energy + Delta-G solvation = -4480.988714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.20217 -47.72987 -47.65362 -40.89642 -39.60289 -36.84373 -34.84078 -33.09149 -31.98937 -30.90125 -28.52301 -26.65851 -25.30051 -25.11807 -22.24830 -22.08954 -20.74130 -20.01252 -19.10723 -18.59967 -18.34399 -17.59085 -17.32525 -16.81121 -16.42109 -16.07672 -15.63438 -15.07117 -14.59048 -14.48008 -14.44496 -14.42786 -14.07413 -13.98099 -13.85869 -13.80675 -13.74234 -13.33797 -13.19066 -12.84077 -12.64999 -12.15190 -12.05442 -11.29198 -10.89468 -10.79819 -10.62282 -10.47505 -10.34710 -10.17137 -10.01140 -9.63018 -9.49561 -9.20052 -8.76713 -7.26609 -5.79067 -3.15943 -0.63961 0.26763 0.67292 1.53437 1.95410 2.27572 2.58909 2.84996 3.23234 3.35617 3.37726 3.43779 3.67949 4.03536 4.21882 4.28084 4.46352 4.56712 4.77894 4.87210 5.06509 5.43753 5.49287 5.56321 5.66661 5.91774 5.96361 6.32142 6.37833 6.61600 6.65825 6.90400 7.02411 7.69259 7.95972 8.39272 9.17295 9.89006 10.07986 11.39045 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.002488 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.845396 B =11249.801042 C =12226.853712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.165 3.835 11 C -0.112 4.112 12 C -0.198 4.198 13 C 0.139 3.861 14 N -0.710 5.710 15 C 0.580 3.420 16 O -0.495 6.495 17 C -0.232 4.232 18 S 0.231 5.769 19 C 0.033 3.967 20 N -0.442 5.442 21 C 0.042 3.958 22 C 0.549 3.451 23 F -0.154 7.154 24 F -0.167 7.167 25 F -0.159 7.159 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.397 0.603 35 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.335 -18.833 3.038 31.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.038 3.962 11 C -0.131 4.131 12 C -0.218 4.218 13 C 0.018 3.982 14 N -0.361 5.361 15 C 0.362 3.638 16 O -0.370 6.370 17 C -0.359 4.359 18 S 0.488 5.512 19 C -0.263 4.263 20 N -0.153 5.153 21 C -0.099 4.099 22 C 0.492 3.508 23 F -0.135 7.135 24 F -0.148 7.148 25 F -0.140 7.140 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.231 0.769 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 24.900 -18.845 3.030 31.374 hybrid contribution 0.398 1.052 0.393 1.192 sum 25.298 -17.793 3.424 31.118 Atomic orbital electron populations 1.69706 1.05110 1.25922 1.57189 1.24685 0.95256 0.97272 1.01822 0.86525 0.79242 0.84888 0.77741 1.21044 1.21633 1.20286 1.19063 0.80359 0.94904 1.43444 0.89075 1.42602 1.03980 1.01811 1.91229 1.19991 0.86418 0.90092 0.99663 1.23360 0.96844 0.97345 0.95564 1.22593 1.00393 1.00587 0.98206 1.20712 0.94881 0.82301 1.00326 1.45860 1.30833 1.14705 1.44734 1.16630 0.84331 0.81362 0.81494 1.90989 1.25715 1.81255 1.39038 1.25867 1.04526 1.01176 1.04313 1.84086 1.20993 1.13859 1.32273 1.28808 1.01693 1.00034 0.95714 1.65801 1.03421 1.29552 1.16562 1.20434 0.98704 0.90700 1.00087 1.16975 0.80027 0.74282 0.79540 1.93293 1.41411 1.95938 1.82904 1.93223 1.95665 1.43896 1.82051 1.93267 1.95828 1.58009 1.66869 0.92958 0.80524 0.94415 0.93897 0.86699 0.86760 0.88486 0.90180 0.76853 0.76437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.89 21.98 27.74 -169.99 -4.71 17.27 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 9 N -0.75 -17.70 5.40 -61.08 -0.33 -18.03 16 10 C 0.16 3.06 6.34 -5.19 -0.03 3.03 16 11 C -0.11 -1.55 9.63 -36.03 -0.35 -1.89 16 12 C -0.20 -2.24 9.63 -36.03 -0.35 -2.59 16 13 C 0.14 1.72 5.75 -5.19 -0.03 1.69 16 14 N -0.71 -7.21 5.54 -62.80 -0.35 -7.56 16 15 C 0.58 7.16 7.70 -12.86 -0.10 7.06 16 16 O -0.49 -8.07 13.10 5.20 0.07 -8.00 16 17 C -0.23 -2.31 6.44 -37.10 -0.24 -2.54 16 18 S 0.23 1.09 22.37 -107.50 -2.40 -1.31 16 19 C 0.03 0.17 12.22 51.75 0.63 0.80 16 20 N -0.44 -4.14 10.10 -11.53 -0.12 -4.26 16 21 C 0.04 0.47 6.20 -83.89 -0.52 -0.05 16 22 C 0.55 7.26 2.79 36.01 0.10 7.36 16 23 F -0.15 -2.28 15.74 2.25 0.04 -2.24 16 24 F -0.17 -2.13 17.01 2.25 0.04 -2.09 16 25 F -0.16 -2.25 15.76 2.25 0.04 -2.22 16 26 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 27 H 0.36 8.26 5.52 -40.82 -0.23 8.03 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.82 5.31 -51.93 -0.28 0.55 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.10 1.43 5.31 -51.93 -0.28 1.15 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 2.76 7.67 -40.82 -0.31 2.45 16 35 H 0.22 0.13 8.06 -52.49 -0.42 -0.30 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -35.78 330.76 -5.91 -41.69 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -2.79 Total: 4.71 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -1.13 Total: 5.72 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.02 Total: -58.51 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.07 Total: -8.00 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.40 Total: -1.31 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.78 -5.91 -41.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268553151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.133 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds