Wall clock time and date at job start Tue Mar 31 2020 18:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48506 * 109.46565 * 269.99551 * 3 2 1 5 5 H 1.48497 * 109.47359 * 29.99459 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00204 * 3 2 1 7 7 C 1.38816 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99705 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99929 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.31006 * 120.00064 * 127.20518 * 11 10 9 13 13 C 1.50698 * 120.00030 * 7.74254 * 12 11 10 14 14 N 1.46504 * 109.47200 * 127.20406 * 13 12 11 15 15 C 1.34771 * 120.00109 * 180.02562 * 14 13 12 16 16 O 1.21690 * 119.99836 * 0.27653 * 15 14 13 17 17 C 1.46679 * 119.99985 * 179.97438 * 15 14 13 18 18 S 1.76212 * 126.13334 * 354.16347 * 17 15 14 19 19 C 1.70952 * 90.31684 * 179.97438 * 18 17 15 20 20 N 1.29429 * 110.38903 * 0.34527 * 19 18 17 21 21 C 1.30947 * 117.36477 * 359.72969 * 20 19 18 22 22 C 1.50703 * 122.90305 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.46805 * 241.81084 * 22 21 20 24 24 F 1.39895 * 109.46905 * 1.80865 * 22 21 20 25 25 F 1.39900 * 109.46906 * 121.81290 * 22 21 20 26 26 H 0.96995 * 119.99437 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00436 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47216 * 60.00216 * 10 9 7 29 29 H 1.09005 * 109.47264 * 300.00328 * 10 9 7 30 30 H 1.07998 * 119.99991 * 307.20397 * 11 10 9 31 31 H 1.08001 * 119.99993 * 187.74134 * 12 11 10 32 32 H 1.08999 * 109.46868 * 7.20731 * 13 12 11 33 33 H 1.08990 * 109.47328 * 247.20512 * 13 12 11 34 34 H 0.97005 * 119.99368 * 359.97438 * 14 13 12 35 35 H 1.07996 * 124.80089 * 180.09703 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.5937 -2.1957 0.0000 12 6 6.3630 -2.7505 0.9036 13 6 5.8014 -3.7963 1.8321 14 7 6.6421 -4.9952 1.7829 15 6 6.3304 -6.0682 2.5364 16 8 5.3478 -6.0431 3.2538 17 6 7.1717 -7.2686 2.4867 18 16 8.5338 -7.5387 1.4018 19 6 8.7909 -9.0809 2.0932 20 7 7.9175 -9.3107 3.0203 21 6 7.0364 -8.3730 3.2630 22 6 5.9651 -8.5085 4.3142 23 9 4.7060 -8.4502 3.7071 24 9 6.1095 -9.7348 4.9717 25 9 6.0853 -7.4661 5.2396 26 1 -0.4849 0.8400 -0.0004 27 1 3.8647 -0.3623 -0.0004 28 1 3.8484 -3.0428 -0.8898 29 1 3.8490 -3.0425 0.8902 30 1 6.0213 -1.5411 -0.7449 31 1 7.3997 -2.4585 0.9832 32 1 4.7878 -4.0505 1.5223 33 1 5.7835 -3.4067 2.8498 34 1 7.4227 -5.0168 1.2073 35 1 9.5693 -9.7678 1.7955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268553151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:10 Heat of formation + Delta-G solvation = -114.845275 kcal Electronic energy + Delta-G solvation = -25688.228629 eV Core-core repulsion = 21206.024772 eV Total energy + Delta-G solvation = -4482.203857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.22816 -48.74665 -48.72364 -41.62046 -40.45647 -38.10512 -36.29828 -34.57789 -33.03753 -32.50426 -29.46303 -27.96881 -26.44160 -25.96629 -24.04830 -23.06875 -21.59589 -20.90491 -20.34189 -19.64056 -19.62812 -18.83324 -18.26239 -17.75387 -17.43432 -16.94868 -16.61601 -16.34167 -15.82162 -15.59639 -15.49827 -15.43510 -15.25200 -15.10322 -15.01724 -14.87781 -14.84743 -14.75367 -14.33800 -14.18959 -14.05802 -13.53513 -13.07809 -12.84129 -12.73690 -12.20715 -11.88665 -11.71359 -11.62530 -11.12591 -11.05871 -10.98703 -10.50717 -10.47720 -10.05360 -9.27981 -8.04927 -5.40116 -1.25613 -0.27892 0.18861 0.92317 0.95511 1.37584 1.42872 1.44094 1.50493 1.69780 1.96506 2.38462 2.47912 2.84957 3.21627 3.26235 3.41724 3.54969 3.69928 3.79126 3.84443 4.09279 4.29351 4.46101 4.55127 4.80286 4.89223 4.96979 5.16231 5.53744 5.70069 5.83723 6.06610 6.18650 6.20844 6.85292 7.05388 7.79303 8.00732 9.16703 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.002488 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.845396 B =11249.801042 C =12226.853712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.243 4.243 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.159 3.841 11 C -0.132 4.132 12 C -0.157 4.157 13 C 0.136 3.864 14 N -0.693 5.693 15 C 0.576 3.424 16 O -0.547 6.547 17 C -0.271 4.271 18 S 0.337 5.663 19 C 0.045 3.955 20 N -0.477 5.477 21 C 0.032 3.968 22 C 0.539 3.461 23 F -0.171 7.171 24 F -0.169 7.169 25 F -0.171 7.171 26 H 0.259 0.741 27 H 0.370 0.630 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.416 0.584 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.434 -18.407 1.636 35.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.171 1.171 7 C -0.374 4.374 8 H 0.069 0.931 9 N -0.399 5.399 10 C 0.034 3.966 11 C -0.151 4.151 12 C -0.176 4.176 13 C 0.014 3.986 14 N -0.345 5.345 15 C 0.360 3.640 16 O -0.426 6.426 17 C -0.398 4.398 18 S 0.596 5.404 19 C -0.249 4.249 20 N -0.189 5.189 21 C -0.111 4.111 22 C 0.482 3.518 23 F -0.153 7.153 24 F -0.150 7.150 25 F -0.152 7.152 26 H 0.068 0.932 27 H 0.203 0.797 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.156 0.844 31 H 0.177 0.823 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.254 0.746 35 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 30.107 -18.449 1.581 35.345 hybrid contribution -1.110 0.709 0.809 1.545 sum 28.997 -17.739 2.390 34.077 Atomic orbital electron populations 1.69911 1.07390 1.26939 1.59293 1.25637 0.96236 1.01772 1.02168 0.85285 0.78662 0.78717 0.78359 1.19868 1.22316 1.17142 1.19031 0.82786 0.93483 1.42069 0.93112 1.42580 1.02274 1.04025 1.91021 1.20091 0.89852 0.87908 0.98753 1.23094 0.93602 1.00233 0.98207 1.22814 1.01853 0.97781 0.95116 1.20552 0.94198 0.83592 1.00270 1.45595 1.30923 1.13510 1.44514 1.17007 0.83961 0.82272 0.80717 1.90958 1.28118 1.82340 1.41168 1.25718 1.07233 0.99955 1.06884 1.83691 1.16246 1.12051 1.28426 1.29673 1.00698 1.01009 0.93500 1.65823 1.04517 1.29721 1.18861 1.20137 0.98907 0.91940 1.00072 1.17369 0.80447 0.73861 0.80156 1.93244 1.42867 1.96000 1.83141 1.93202 1.95660 1.43909 1.82262 1.93225 1.95879 1.58583 1.67516 0.93198 0.79682 0.95236 0.94885 0.84367 0.82260 0.91514 0.90944 0.74611 0.71842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.48 13.97 21.65 0.30 -64.17 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.96 45.30 27.74 68.60 1.90 47.20 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 7 C -0.24 -14.25 10.47 84.04 0.88 -13.37 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 N -0.75 -35.30 5.40 -347.17 -1.87 -37.17 16 10 C 0.16 5.92 6.34 85.63 0.54 6.46 16 11 C -0.13 -3.28 9.63 25.64 0.25 -3.03 16 12 C -0.16 -2.96 9.63 25.64 0.25 -2.72 16 13 C 0.14 3.24 5.75 85.63 0.49 3.73 16 14 N -0.69 -12.87 5.54 -470.83 -2.61 -15.48 16 15 C 0.58 14.18 7.70 86.45 0.67 14.85 16 16 O -0.55 -18.88 13.10 -4.32 -0.06 -18.94 16 17 C -0.27 -5.04 6.44 23.88 0.15 -4.88 16 18 S 0.34 1.76 22.37 -56.49 -1.26 0.50 16 19 C 0.04 0.27 12.22 130.60 1.60 1.86 16 20 N -0.48 -8.08 10.10 -190.40 -1.92 -10.00 16 21 C 0.03 0.72 6.20 42.09 0.26 0.98 16 22 C 0.54 15.08 2.79 71.24 0.20 15.28 16 23 F -0.17 -5.48 15.74 44.97 0.71 -4.77 16 24 F -0.17 -4.53 17.01 44.97 0.76 -3.76 16 25 F -0.17 -5.20 15.76 44.97 0.71 -4.49 16 26 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 27 H 0.37 16.06 5.52 -92.71 -0.51 15.54 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 1.31 5.31 -2.38 -0.01 1.30 16 30 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.07 2.03 5.31 -2.39 -0.01 2.02 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.42 4.26 7.67 -92.70 -0.71 3.54 16 35 H 0.27 -1.24 8.06 -2.91 -0.02 -1.27 16 Total: -1.00 -85.24 330.76 2.32 -82.92 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.09 Total: 12.55 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 5.75 Total: 15.62 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -6.11 Total: -126.83 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.06 Total: -18.94 kcal Atomic # 9 Polarization: -15.20 SS G_CDS: 2.18 Total: -13.02 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.26 Total: 0.50 kcal Total: -85.24 2.32 -82.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268553151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.925 kcal (2) G-P(sol) polarization free energy of solvation -85.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds