Wall clock time and date at job start Tue Mar 31 2020 19:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99676 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99932 * 3 2 1 5 5 H 1.48497 * 109.47216 * 29.99418 * 3 2 1 6 6 H 1.48499 * 109.47631 * 149.99657 * 3 2 1 7 7 C 1.38805 * 120.00628 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99841 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00456 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00328 * 180.02562 * 9 7 2 11 11 C 1.50690 * 109.47224 * 179.97438 * 10 9 7 12 12 C 1.38241 * 119.99846 * 89.99969 * 11 10 9 13 13 C 1.38232 * 119.99784 * 179.97438 * 12 11 10 14 14 C 1.38238 * 120.00355 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00295 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.47131 * 89.99888 * 15 14 13 17 17 C 1.34777 * 119.99724 * 180.02562 * 16 15 14 18 18 O 1.21583 * 120.00271 * 359.97438 * 17 16 15 19 19 C 1.47521 * 119.99804 * 179.72703 * 17 16 15 20 20 C 1.36780 * 126.93030 * 180.27504 * 19 17 16 21 21 C 1.41408 * 103.84011 * 179.97438 * 20 19 17 22 22 Cl 1.73598 * 126.72779 * 180.02562 * 21 20 19 23 23 N 1.30223 * 106.54977 * 359.97438 * 21 20 19 24 24 O 1.20886 * 111.96259 * 359.69906 * 23 21 20 25 25 C 1.38236 * 119.99529 * 0.25429 * 14 13 12 26 26 C 1.38234 * 120.00330 * 359.49077 * 25 14 13 27 27 H 0.96998 * 120.00599 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99625 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46865 * 59.99440 * 10 9 7 30 30 H 1.09001 * 109.46879 * 300.00042 * 10 9 7 31 31 H 1.07998 * 119.99849 * 0.02562 * 12 11 10 32 32 H 1.07996 * 119.99778 * 180.02562 * 13 12 11 33 33 H 1.09003 * 109.47039 * 330.00450 * 15 14 13 34 34 H 1.08993 * 109.47358 * 210.00132 * 15 14 13 35 35 H 0.97000 * 119.99792 * 359.97438 * 16 15 14 36 36 H 1.07997 * 128.08029 * 0.02562 * 20 19 17 37 37 H 1.08000 * 119.99518 * 179.72939 * 25 14 13 38 38 H 1.07994 * 119.99962 * 180.25171 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3798 -1.2020 0.0011 10 6 4.1124 -2.4706 0.0011 11 6 5.5939 -2.1952 0.0011 12 6 6.2734 -2.0688 1.1983 13 6 7.6325 -1.8167 1.1983 14 6 8.3121 -1.6903 0.0011 15 6 9.7937 -1.4148 0.0011 16 7 10.5264 -2.6836 0.0012 17 6 11.8741 -2.6834 0.0017 18 8 12.4820 -1.6304 0.0017 19 6 12.6118 -3.9609 0.0078 20 6 13.9696 -4.1258 0.0144 21 6 14.1399 -5.5296 0.0188 22 17 15.6461 -6.3926 0.0284 23 7 12.9454 -6.0481 0.0153 24 8 12.0842 -5.1997 0.0155 25 6 7.6315 -1.8109 -1.1960 26 6 6.2734 -2.0683 -1.1961 27 1 -0.4851 0.8400 -0.0004 28 1 3.8647 -0.3619 0.0014 29 1 3.8493 -3.0420 -0.8891 30 1 3.8487 -3.0424 0.8908 31 1 5.7425 -2.1679 2.1335 32 1 8.1635 -1.7184 2.1336 33 1 10.0570 -0.8433 0.8912 34 1 10.0570 -0.8433 -0.8888 35 1 10.0414 -3.5236 0.0016 36 1 14.7334 -3.3622 0.0166 37 1 8.1617 -1.7079 -2.1313 38 1 5.7425 -2.1666 -2.1314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319005336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:52 Heat of formation + Delta-G solvation = 66.728816 kcal Electronic energy + Delta-G solvation = -24135.629672 eV Core-core repulsion = 20201.112493 eV Total energy + Delta-G solvation = -3934.517180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.81800 -40.34769 -39.30937 -37.75216 -35.95820 -34.73099 -34.29613 -32.94030 -32.07479 -30.92016 -30.62494 -27.70380 -25.26328 -24.28407 -23.87647 -22.69625 -22.10933 -21.48743 -20.71195 -19.53757 -18.60432 -17.86656 -17.07464 -16.71266 -16.06648 -16.00287 -15.43130 -15.10508 -14.95062 -14.65865 -14.43247 -14.35126 -13.72198 -13.42111 -13.37934 -13.14874 -13.08835 -13.02011 -12.51854 -12.27972 -12.11307 -11.73544 -11.55113 -11.02203 -10.99216 -10.86011 -10.72864 -10.69895 -10.47796 -10.18744 -9.68499 -9.64443 -8.96905 -8.88941 -8.68363 -7.29950 -5.81374 -3.17994 0.06791 0.79755 1.13493 1.14244 1.44094 1.93630 2.36990 2.69869 3.35202 3.38955 3.43068 3.54429 3.80389 4.02700 4.23789 4.31558 4.44789 4.55595 4.73168 4.98798 4.99100 5.11167 5.16207 5.30837 5.47935 5.53660 5.64730 5.67700 5.71333 5.97158 5.98478 6.31169 6.41354 6.46016 6.47787 6.73825 6.91106 7.01536 7.19275 7.40717 7.93347 8.37093 9.15475 9.87600 10.07095 11.36621 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.001756 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.150085 B =15941.344109 C =16476.685483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.188 3.812 11 C -0.067 4.067 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.129 4.129 15 C 0.165 3.835 16 N -0.704 5.704 17 C 0.605 3.395 18 O -0.507 6.507 19 C -0.068 4.068 20 C -0.135 4.135 21 C 0.050 3.950 22 Cl 0.035 6.965 23 N -0.324 5.324 24 O 0.140 5.860 25 C -0.101 4.101 26 C -0.108 4.108 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.195 0.805 37 H 0.122 0.878 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.477 -9.827 0.027 32.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.062 3.938 11 C -0.068 4.068 12 C -0.126 4.126 13 C -0.120 4.120 14 C -0.130 4.130 15 C 0.043 3.957 16 N -0.356 5.356 17 C 0.387 3.613 18 O -0.382 6.382 19 C -0.134 4.134 20 C -0.158 4.158 21 C -0.133 4.133 22 Cl 0.063 6.937 23 N -0.023 5.023 24 O 0.062 5.938 25 C -0.120 4.120 26 C -0.126 4.126 27 H 0.070 0.930 28 H 0.196 0.804 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.213 0.787 37 H 0.140 0.860 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 31.360 -10.467 0.030 33.060 hybrid contribution 0.923 1.316 0.009 1.608 sum 32.283 -9.151 0.039 33.555 Atomic orbital electron populations 1.69697 1.05088 1.25929 1.57237 1.24655 0.95215 0.97214 1.01795 0.86560 0.79255 0.84937 0.77883 1.20990 1.21634 1.20275 1.19054 0.80369 0.94850 1.43502 0.89078 1.42675 1.03890 1.01776 1.91240 1.19684 0.84625 0.89843 0.99689 1.20475 0.97147 0.96297 0.92884 1.21180 0.93854 0.99217 0.98351 1.21026 0.94511 0.99287 0.97133 1.19629 0.94042 1.05319 0.93976 1.20318 0.87218 0.84425 1.03718 1.46065 1.05061 1.11316 1.73127 1.16417 0.82248 0.84760 0.77858 1.90919 1.68156 1.29321 1.49823 1.24238 0.93664 0.87371 1.08176 1.22764 0.95868 0.94725 1.02485 1.24095 0.90131 0.91067 1.07996 1.98440 1.22482 1.75874 1.96890 1.73895 0.97916 1.14275 1.16216 1.85089 1.30849 1.11559 1.66331 1.21028 0.94521 0.99278 0.97128 1.21180 0.93871 0.99250 0.98345 0.92970 0.80447 0.94443 0.94490 0.85531 0.86060 0.89884 0.89876 0.75296 0.78737 0.86048 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -6.93 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.48 5.40 -61.09 -0.33 -17.81 16 10 C 0.19 3.49 6.38 -5.20 -0.03 3.45 16 11 C -0.07 -1.01 5.25 -104.63 -0.55 -1.56 16 12 C -0.11 -1.42 9.70 -39.58 -0.38 -1.81 16 13 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 14 C -0.13 -1.26 5.25 -104.62 -0.55 -1.81 16 15 C 0.17 1.33 5.80 -5.19 -0.03 1.30 16 16 N -0.70 -5.06 5.55 -62.53 -0.35 -5.40 16 17 C 0.60 5.09 7.82 -12.48 -0.10 4.99 16 18 O -0.51 -5.71 16.91 5.29 0.09 -5.62 16 19 C -0.07 -0.51 7.29 -36.33 -0.26 -0.78 16 20 C -0.14 -0.93 10.96 -38.90 -0.43 -1.36 16 21 C 0.05 0.39 7.97 -17.03 -0.14 0.25 16 22 Cl 0.04 0.23 29.33 -51.86 -1.52 -1.29 16 23 N -0.32 -2.92 12.05 32.82 0.40 -2.52 16 24 O 0.14 1.10 11.04 15.52 0.17 1.27 16 25 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 26 C -0.11 -1.42 9.70 -39.58 -0.38 -1.80 16 27 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.36 8.39 5.52 -40.82 -0.23 8.17 16 29 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 30 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.41 2.40 8.29 -40.82 -0.34 2.07 16 36 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -32.55 357.02 -7.93 -40.47 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.95 Total: 5.49 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -3.88 Total: -9.01 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.49 Total: -53.93 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.26 Total: -4.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.52 Total: -1.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.55 -7.93 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319005336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.201 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds