Wall clock time and date at job start Tue Mar 31 2020 19:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99676 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99932 * 3 2 1 5 5 H 1.48497 * 109.47216 * 29.99418 * 3 2 1 6 6 H 1.48499 * 109.47631 * 149.99657 * 3 2 1 7 7 C 1.38805 * 120.00628 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99841 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00456 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00328 * 180.02562 * 9 7 2 11 11 C 1.50690 * 109.47224 * 179.97438 * 10 9 7 12 12 C 1.38241 * 119.99846 * 89.99969 * 11 10 9 13 13 C 1.38232 * 119.99784 * 179.97438 * 12 11 10 14 14 C 1.38238 * 120.00355 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00295 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.47131 * 89.99888 * 15 14 13 17 17 C 1.34777 * 119.99724 * 180.02562 * 16 15 14 18 18 O 1.21583 * 120.00271 * 359.97438 * 17 16 15 19 19 C 1.47521 * 119.99804 * 179.72703 * 17 16 15 20 20 C 1.36780 * 126.93030 * 180.27504 * 19 17 16 21 21 C 1.41408 * 103.84011 * 179.97438 * 20 19 17 22 22 Cl 1.73598 * 126.72779 * 180.02562 * 21 20 19 23 23 N 1.30223 * 106.54977 * 359.97438 * 21 20 19 24 24 O 1.20886 * 111.96259 * 359.69906 * 23 21 20 25 25 C 1.38236 * 119.99529 * 0.25429 * 14 13 12 26 26 C 1.38234 * 120.00330 * 359.49077 * 25 14 13 27 27 H 0.96998 * 120.00599 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99625 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46865 * 59.99440 * 10 9 7 30 30 H 1.09001 * 109.46879 * 300.00042 * 10 9 7 31 31 H 1.07998 * 119.99849 * 0.02562 * 12 11 10 32 32 H 1.07996 * 119.99778 * 180.02562 * 13 12 11 33 33 H 1.09003 * 109.47039 * 330.00450 * 15 14 13 34 34 H 1.08993 * 109.47358 * 210.00132 * 15 14 13 35 35 H 0.97000 * 119.99792 * 359.97438 * 16 15 14 36 36 H 1.07997 * 128.08029 * 0.02562 * 20 19 17 37 37 H 1.08000 * 119.99518 * 179.72939 * 25 14 13 38 38 H 1.07994 * 119.99962 * 180.25171 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3798 -1.2020 0.0011 10 6 4.1124 -2.4706 0.0011 11 6 5.5939 -2.1952 0.0011 12 6 6.2734 -2.0688 1.1983 13 6 7.6325 -1.8167 1.1983 14 6 8.3121 -1.6903 0.0011 15 6 9.7937 -1.4148 0.0011 16 7 10.5264 -2.6836 0.0012 17 6 11.8741 -2.6834 0.0017 18 8 12.4820 -1.6304 0.0017 19 6 12.6118 -3.9609 0.0078 20 6 13.9696 -4.1258 0.0144 21 6 14.1399 -5.5296 0.0188 22 17 15.6461 -6.3926 0.0284 23 7 12.9454 -6.0481 0.0153 24 8 12.0842 -5.1997 0.0155 25 6 7.6315 -1.8109 -1.1960 26 6 6.2734 -2.0683 -1.1961 27 1 -0.4851 0.8400 -0.0004 28 1 3.8647 -0.3619 0.0014 29 1 3.8493 -3.0420 -0.8891 30 1 3.8487 -3.0424 0.8908 31 1 5.7425 -2.1679 2.1335 32 1 8.1635 -1.7184 2.1336 33 1 10.0570 -0.8433 0.8912 34 1 10.0570 -0.8433 -0.8888 35 1 10.0414 -3.5236 0.0016 36 1 14.7334 -3.3622 0.0166 37 1 8.1617 -1.7079 -2.1313 38 1 5.7425 -2.1666 -2.1314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319005336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:51 Heat of formation + Delta-G solvation = 45.224563 kcal Electronic energy + Delta-G solvation = -24136.562167 eV Core-core repulsion = 20201.112493 eV Total energy + Delta-G solvation = -3935.449674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.41286 -41.07326 -40.22106 -38.28337 -37.12769 -35.99650 -34.91848 -33.98979 -33.36912 -32.06385 -31.83803 -28.86076 -26.43222 -24.89406 -24.83099 -23.73494 -23.61718 -22.10938 -21.77457 -20.18542 -19.86226 -19.21154 -17.73302 -17.38270 -16.91683 -16.79970 -16.64137 -16.38085 -15.96650 -15.79559 -15.42645 -15.01179 -14.92144 -14.77044 -14.32996 -14.17002 -14.04148 -13.90415 -13.63486 -13.47637 -13.22812 -13.14425 -12.84158 -12.26854 -12.18126 -11.93136 -11.89393 -11.79181 -11.66611 -11.26933 -11.08621 -11.02880 -10.30950 -9.80796 -9.67920 -9.33242 -8.04389 -5.38617 -0.51383 0.19671 0.26181 0.52088 0.57139 1.32510 1.37705 1.40274 1.48007 1.74806 2.06749 2.47029 2.81391 3.02204 3.26997 3.47070 3.60223 3.71969 3.77656 3.86838 3.91818 4.03307 4.16188 4.30032 4.53056 4.57261 4.69217 4.70622 4.89975 4.90828 5.07821 5.08756 5.21433 5.45583 5.60140 5.73362 5.81283 6.06323 6.14173 6.19220 6.62692 6.80244 7.05180 7.80069 8.00346 9.16826 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.001756 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.150085 B =15941.344109 C =16476.685483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.254 1.254 7 C -0.239 4.239 8 H 0.058 0.942 9 N -0.752 5.752 10 C 0.187 3.813 11 C -0.091 4.091 12 C -0.118 4.118 13 C -0.095 4.095 14 C -0.111 4.111 15 C 0.169 3.831 16 N -0.695 5.695 17 C 0.613 3.387 18 O -0.535 6.535 19 C -0.071 4.071 20 C -0.128 4.128 21 C 0.044 3.956 22 Cl 0.044 6.956 23 N -0.344 5.344 24 O 0.143 5.857 25 C -0.095 4.095 26 C -0.117 4.117 27 H 0.259 0.741 28 H 0.366 0.634 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.419 0.581 36 H 0.214 0.786 37 H 0.147 0.853 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.913 -9.044 0.022 36.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.369 4.369 8 H 0.076 0.924 9 N -0.397 5.397 10 C 0.062 3.938 11 C -0.092 4.092 12 C -0.136 4.136 13 C -0.113 4.113 14 C -0.112 4.112 15 C 0.047 3.953 16 N -0.346 5.346 17 C 0.396 3.604 18 O -0.413 6.413 19 C -0.137 4.137 20 C -0.150 4.150 21 C -0.138 4.138 22 Cl 0.072 6.928 23 N -0.044 5.044 24 O 0.065 5.935 25 C -0.113 4.113 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.199 0.801 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.256 0.744 36 H 0.230 0.770 37 H 0.164 0.836 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 34.834 -9.737 0.026 36.169 hybrid contribution -0.076 0.922 0.007 0.925 sum 34.758 -8.815 0.033 35.858 Atomic orbital electron populations 1.69878 1.07090 1.26780 1.59431 1.25484 0.96091 1.01213 1.02414 0.85414 0.78563 0.79646 0.78203 1.20291 1.22053 1.17898 1.19055 0.82534 0.93633 1.41713 0.92351 1.42683 1.02325 1.03740 1.91001 1.19734 0.87184 0.87774 0.99122 1.20152 0.94876 0.99582 0.94540 1.21226 0.95087 0.99804 0.97534 1.21256 0.93421 0.98007 0.98645 1.19790 0.94908 1.03198 0.93321 1.20291 0.85771 0.84733 1.04511 1.45944 1.04743 1.11516 1.72400 1.16352 0.82304 0.84492 0.77264 1.90913 1.68721 1.30295 1.51352 1.24120 0.93820 0.87056 1.08724 1.23025 0.96075 0.94650 1.01284 1.24273 0.90207 0.91580 1.07760 1.98444 1.21802 1.75780 1.96823 1.73875 0.98574 1.14897 1.17064 1.85071 1.30625 1.11546 1.66296 1.21263 0.93441 0.97963 0.98635 1.21228 0.95085 0.99752 0.97530 0.93234 0.80103 0.94758 0.94867 0.85889 0.83612 0.89205 0.89172 0.74365 0.76950 0.83558 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.76 13.97 21.65 0.30 -62.45 16 2 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 3 Si 0.95 45.40 27.74 68.60 1.90 47.31 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 7 C -0.24 -13.64 10.47 84.03 0.88 -12.76 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 9 N -0.75 -35.07 5.40 -347.19 -1.87 -36.95 16 10 C 0.19 7.02 6.38 85.63 0.55 7.57 16 11 C -0.09 -2.64 5.25 -19.87 -0.10 -2.74 16 12 C -0.12 -2.92 9.70 22.27 0.22 -2.71 16 13 C -0.09 -1.73 9.70 22.27 0.22 -1.52 16 14 C -0.11 -1.78 5.25 -19.87 -0.10 -1.88 16 15 C 0.17 2.08 5.80 85.63 0.50 2.58 16 16 N -0.69 -7.73 5.55 -470.02 -2.61 -10.34 16 17 C 0.61 8.68 7.82 86.69 0.68 9.36 16 18 O -0.54 -10.70 16.91 -3.98 -0.07 -10.77 16 19 C -0.07 -0.91 7.29 24.38 0.18 -0.74 16 20 C -0.13 -1.48 10.96 22.71 0.25 -1.23 16 21 C 0.04 0.62 7.97 85.71 0.68 1.30 16 22 Cl 0.04 0.51 29.33 -2.72 -0.08 0.43 16 23 N -0.34 -5.71 12.05 -51.03 -0.61 -6.32 16 24 O 0.14 2.00 11.04 65.70 0.73 2.73 16 25 C -0.09 -1.71 9.70 22.27 0.22 -1.50 16 26 C -0.12 -2.89 9.70 22.27 0.22 -2.67 16 27 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.37 16.48 5.52 -92.71 -0.51 15.97 16 29 H 0.03 1.30 8.09 -2.39 -0.02 1.28 16 30 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 31 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 34 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.42 3.56 8.29 -92.71 -0.77 2.80 16 36 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -71.15 357.02 2.31 -68.84 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -0.21 Total: 17.56 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 4.83 Total: -10.03 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -4.79 Total: -116.06 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.66 Total: -8.04 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -0.08 Total: 0.43 kcal Total: -71.15 2.31 -68.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319005336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.063 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds