Wall clock time and date at job start Tue Mar 31 2020 19:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30237 * 126.17271 * 2 1 4 4 N 1.39828 * 110.09630 * 179.97438 * 3 2 1 5 5 C 1.46507 * 125.39140 * 180.02562 * 4 3 2 6 6 C 1.36827 * 109.22316 * 359.97438 * 4 3 2 7 7 N 1.32762 * 133.58323 * 180.02562 * 6 4 3 8 8 C 1.31503 * 121.47475 * 179.97438 * 7 6 4 9 9 C 1.38807 * 121.59159 * 0.02562 * 8 7 6 10 10 S 1.76203 * 120.17801 * 180.02562 * 9 8 7 11 11 O 1.42098 * 106.39988 * 336.45626 * 10 9 8 12 12 O 1.42104 * 106.39851 * 203.54281 * 10 9 8 13 13 N 1.65598 * 107.21791 * 90.00115 * 10 9 8 14 14 C 1.36939 * 119.99768 * 269.99862 * 13 10 9 15 15 H 1.08004 * 120.00009 * 7.03615 * 14 13 10 16 16 C 1.38812 * 120.00050 * 187.03815 * 14 13 10 17 17 N 1.31625 * 119.99521 * 26.45476 * 16 14 13 18 18 Si 1.86794 * 120.00267 * 206.45838 * 16 14 13 19 19 H 1.48501 * 109.46890 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47229 * 119.99896 * 18 16 14 21 21 H 1.48502 * 109.47023 * 240.00003 * 18 16 14 22 22 C 1.46500 * 119.99987 * 90.00165 * 13 10 9 23 23 C 1.47201 * 109.47151 * 92.88346 * 22 13 10 24 24 N 8.37913 * 83.93828 * 165.58348 * 2 1 3 25 25 C 1.37019 * 119.64217 * 0.27320 * 9 8 7 26 26 C 1.39995 * 118.15591 * 359.47209 * 25 9 8 27 27 H 1.09005 * 109.46406 * 89.97840 * 1 2 3 28 28 H 1.08993 * 109.47111 * 209.97653 * 1 2 3 29 29 H 1.08997 * 109.47109 * 329.97748 * 1 2 3 30 30 H 1.09002 * 109.46359 * 269.95769 * 5 4 3 31 31 H 1.09000 * 109.46827 * 29.95530 * 5 4 3 32 32 H 1.08993 * 109.47101 * 149.96008 * 5 4 3 33 33 H 1.08003 * 119.20260 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99567 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.47030 * 332.88069 * 22 13 10 36 36 H 1.08998 * 109.46731 * 212.88041 * 22 13 10 37 37 H 1.07993 * 120.91904 * 179.70146 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2757 1.0513 0.0000 4 7 3.6193 0.6641 0.0006 5 6 4.7654 1.5768 0.0013 6 6 3.6944 -0.7021 0.0016 7 7 4.7049 -1.5632 0.0028 8 6 4.5001 -2.8622 0.0041 9 6 3.2189 -3.3963 0.0036 10 16 2.9874 -5.1430 0.0059 11 8 4.1741 -5.7057 -0.5366 12 8 1.6963 -5.3774 -0.5395 13 7 2.9214 -5.6266 1.5884 14 6 4.0698 -5.9823 2.2440 15 1 5.0291 -5.8403 1.7687 16 6 4.0009 -6.5255 3.5196 17 7 2.9205 -7.1733 3.9015 18 14 5.4411 -6.3372 4.6941 19 1 6.5265 -5.5736 4.0277 20 1 4.9967 -5.6086 5.9094 21 1 5.9452 -7.6801 5.0785 22 6 1.6344 -5.6739 2.2868 23 6 1.0621 -7.0250 2.1700 24 7 0.6222 -8.0699 2.0745 25 6 2.1351 -2.5579 -0.0039 26 6 2.3679 -1.1774 0.0005 27 1 -0.3632 0.0004 -1.0278 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 5.0505 1.8026 -1.0263 31 1 4.4946 2.4995 0.5145 32 1 5.6035 1.1072 0.5160 33 1 5.3492 -3.5295 0.0046 34 1 2.8725 -7.5532 4.7927 35 1 0.9521 -4.9504 1.8405 36 1 1.7831 -5.4320 3.3391 37 1 1.1294 -2.9511 -0.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319904091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:48 Heat of formation + Delta-G solvation = 80.094760 kcal Electronic energy + Delta-G solvation = -26606.956576 eV Core-core repulsion = 22707.355444 eV Total energy + Delta-G solvation = -3899.601132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -41.65683 -38.18216 -36.70984 -36.46273 -35.07473 -34.54531 -34.34655 -31.96611 -31.57701 -30.32442 -29.70164 -27.49180 -25.89443 -24.12650 -23.99248 -22.89441 -20.06782 -19.00175 -18.18737 -17.92530 -17.45147 -16.84181 -16.61061 -16.04163 -16.00532 -15.22369 -14.72999 -14.48476 -13.82127 -13.81831 -13.70020 -13.54601 -13.48548 -13.13122 -12.99222 -12.94494 -12.50533 -12.30616 -11.96692 -11.77903 -11.55680 -11.39048 -11.38396 -11.34313 -11.16205 -11.00901 -10.73293 -10.61738 -10.53348 -10.33727 -10.10348 -9.76288 -9.42308 -9.07138 -8.51409 -8.36872 -6.52287 -4.01657 0.71225 0.85282 1.16569 1.98434 2.25020 3.12365 3.23162 3.26383 3.46348 3.74116 3.96761 4.07719 4.14158 4.23155 4.30985 4.35499 4.55198 4.78621 4.84525 4.93284 5.00315 5.01442 5.03582 5.27700 5.32485 5.34318 5.36703 5.45333 5.62653 5.65944 5.82666 5.93965 6.14382 6.41440 6.44141 6.64817 6.84890 7.30400 7.39773 7.79887 8.13858 8.67168 8.96511 9.07365 10.52569 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.004485 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.382675 B = 6240.944214 C = 7014.927004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.122 3.878 3 N -0.250 5.250 4 N -0.397 5.397 5 C 0.113 3.887 6 C 0.344 3.656 7 N -0.516 5.516 8 C 0.265 3.735 9 C -0.763 4.763 10 S 2.664 3.336 11 O -0.954 6.954 12 O -0.972 6.972 13 N -0.837 5.837 14 C -0.327 4.327 15 H 0.119 0.881 16 C 0.049 3.951 17 N -0.862 5.862 18 Si 0.908 3.092 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.283 1.283 22 C 0.240 3.760 23 C 0.258 3.742 24 N -0.477 5.477 25 C 0.108 3.892 26 C -0.249 4.249 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.182 0.818 34 H 0.274 0.726 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 16.421 -3.685 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 N -0.063 5.063 4 N -0.186 5.186 5 C -0.028 4.028 6 C 0.105 3.895 7 N -0.231 5.231 8 C 0.094 3.906 9 C -0.848 4.848 10 S 2.751 3.249 11 O -0.944 6.944 12 O -0.962 6.962 13 N -0.668 5.668 14 C -0.458 4.458 15 H 0.136 0.864 16 C -0.158 4.158 17 N -0.500 5.500 18 Si 0.734 3.266 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.209 1.209 22 C 0.110 3.890 23 C -0.061 4.061 24 N -0.157 5.157 25 C 0.079 3.921 26 C -0.259 4.259 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.199 0.801 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.130 16.224 -4.472 16.867 hybrid contribution 0.505 0.096 1.209 1.314 sum -0.624 16.319 -3.263 16.654 Atomic orbital electron populations 1.20347 0.85019 1.04413 1.03933 1.23556 0.96889 0.88253 0.96987 1.76669 0.86316 1.22813 1.20548 1.48104 1.04558 1.01626 1.64348 1.21812 0.84750 0.93066 1.03187 1.19202 0.90741 0.86170 0.93430 1.66903 1.32845 1.03080 1.20285 1.22506 0.95459 0.89194 0.83434 1.32469 1.00090 1.31292 1.20914 1.03564 0.73423 0.74278 0.73627 1.93498 1.48104 1.75754 1.77056 1.93514 1.40514 1.84859 1.77286 1.53221 1.10988 1.71328 1.31312 1.19359 0.85148 1.41693 0.99600 0.86384 1.25013 0.98031 0.95070 0.97665 1.69933 1.29626 1.30299 1.20175 0.86186 0.81633 0.78379 0.80411 1.19019 1.20539 1.20866 1.18264 0.82940 0.85865 1.01890 1.29024 0.91050 0.95140 0.90844 1.80922 1.12286 1.11374 1.11141 1.20524 0.99098 0.89833 0.82662 1.20418 0.93820 0.94986 1.16698 0.89474 0.89307 0.89968 0.91173 0.89471 0.89040 0.80086 0.91538 0.90035 0.85754 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 81. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.48 36.01 0.38 -0.24 16 2 C 0.12 1.51 7.44 -80.22 -0.60 0.92 16 3 N -0.25 -3.36 12.40 34.82 0.43 -2.93 16 4 N -0.40 -5.46 4.04 -67.21 -0.27 -5.73 16 5 C 0.11 1.07 11.44 59.85 0.68 1.75 16 6 C 0.34 5.41 7.97 -156.11 -1.24 4.16 16 7 N -0.52 -8.41 10.40 -12.34 -0.13 -8.54 16 8 C 0.26 4.31 10.65 -17.48 -0.19 4.12 16 9 C -0.76 -12.52 5.96 -39.81 -0.24 -12.76 16 10 S 2.66 51.58 5.61 -107.50 -0.60 50.97 16 11 O -0.95 -20.77 16.16 -57.17 -0.92 -21.70 16 12 O -0.97 -19.68 16.32 -57.17 -0.93 -20.62 16 13 N -0.84 -17.43 2.88 -62.77 -0.18 -17.61 16 14 C -0.33 -7.41 9.37 -15.06 -0.14 -7.55 16 15 H 0.12 2.62 7.41 -52.48 -0.39 2.23 16 16 C 0.05 1.13 4.88 -17.43 -0.09 1.05 16 17 N -0.86 -20.71 9.06 55.49 0.50 -20.21 16 18 Si 0.91 18.28 29.63 -169.99 -5.04 13.25 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 C 0.24 4.64 5.09 -6.83 -0.03 4.61 16 23 C 0.26 5.90 13.35 -20.70 -0.28 5.62 16 24 N -0.48 -11.80 18.55 42.22 0.78 -11.02 16 25 C 0.11 1.57 9.64 -39.37 -0.38 1.19 16 26 C -0.25 -3.65 6.35 -105.18 -0.67 -4.32 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.18 2.69 7.59 -52.48 -0.40 2.30 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.08 1.21 7.69 -51.93 -0.40 0.81 16 36 H 0.12 2.38 6.45 -51.93 -0.34 2.04 16 37 H 0.15 1.81 7.66 -52.49 -0.40 1.41 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -32.35 342.94 -7.57 -39.92 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.59 Total: 0.49 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.79 Total: -1.45 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: 1.14 Total: -66.04 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.86 Total: -42.31 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.04 Total: 13.25 kcal Atomic # 16 Polarization: 51.58 SS G_CDS: -0.60 Total: 50.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.35 -7.57 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319904091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.019 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds