Wall clock time and date at job start Tue Mar 31 2020 19:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30237 * 126.17271 * 2 1 4 4 N 1.39828 * 110.09630 * 179.97438 * 3 2 1 5 5 C 1.46507 * 125.39140 * 180.02562 * 4 3 2 6 6 C 1.36827 * 109.22316 * 359.97438 * 4 3 2 7 7 N 1.32762 * 133.58323 * 180.02562 * 6 4 3 8 8 C 1.31503 * 121.47475 * 179.97438 * 7 6 4 9 9 C 1.38807 * 121.59159 * 0.02562 * 8 7 6 10 10 S 1.76203 * 120.17801 * 180.02562 * 9 8 7 11 11 O 1.42098 * 106.39988 * 336.45626 * 10 9 8 12 12 O 1.42104 * 106.39851 * 203.54281 * 10 9 8 13 13 N 1.65598 * 107.21791 * 90.00115 * 10 9 8 14 14 C 1.36939 * 119.99768 * 269.99862 * 13 10 9 15 15 H 1.08004 * 120.00009 * 7.03615 * 14 13 10 16 16 C 1.38812 * 120.00050 * 187.03815 * 14 13 10 17 17 N 1.31625 * 119.99521 * 26.45476 * 16 14 13 18 18 Si 1.86794 * 120.00267 * 206.45838 * 16 14 13 19 19 H 1.48501 * 109.46890 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47229 * 119.99896 * 18 16 14 21 21 H 1.48502 * 109.47023 * 240.00003 * 18 16 14 22 22 C 1.46500 * 119.99987 * 90.00165 * 13 10 9 23 23 C 1.47201 * 109.47151 * 92.88346 * 22 13 10 24 24 N 8.37913 * 83.93828 * 165.58348 * 2 1 3 25 25 C 1.37019 * 119.64217 * 0.27320 * 9 8 7 26 26 C 1.39995 * 118.15591 * 359.47209 * 25 9 8 27 27 H 1.09005 * 109.46406 * 89.97840 * 1 2 3 28 28 H 1.08993 * 109.47111 * 209.97653 * 1 2 3 29 29 H 1.08997 * 109.47109 * 329.97748 * 1 2 3 30 30 H 1.09002 * 109.46359 * 269.95769 * 5 4 3 31 31 H 1.09000 * 109.46827 * 29.95530 * 5 4 3 32 32 H 1.08993 * 109.47101 * 149.96008 * 5 4 3 33 33 H 1.08003 * 119.20260 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99567 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.47030 * 332.88069 * 22 13 10 36 36 H 1.08998 * 109.46731 * 212.88041 * 22 13 10 37 37 H 1.07993 * 120.91904 * 179.70146 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2757 1.0513 0.0000 4 7 3.6193 0.6641 0.0006 5 6 4.7654 1.5768 0.0013 6 6 3.6944 -0.7021 0.0016 7 7 4.7049 -1.5632 0.0028 8 6 4.5001 -2.8622 0.0041 9 6 3.2189 -3.3963 0.0036 10 16 2.9874 -5.1430 0.0059 11 8 4.1741 -5.7057 -0.5366 12 8 1.6963 -5.3774 -0.5395 13 7 2.9214 -5.6266 1.5884 14 6 4.0698 -5.9823 2.2440 15 1 5.0291 -5.8403 1.7687 16 6 4.0009 -6.5255 3.5196 17 7 2.9205 -7.1733 3.9015 18 14 5.4411 -6.3372 4.6941 19 1 6.5265 -5.5736 4.0277 20 1 4.9967 -5.6086 5.9094 21 1 5.9452 -7.6801 5.0785 22 6 1.6344 -5.6739 2.2868 23 6 1.0621 -7.0250 2.1700 24 7 0.6222 -8.0699 2.0745 25 6 2.1351 -2.5579 -0.0039 26 6 2.3679 -1.1774 0.0005 27 1 -0.3632 0.0004 -1.0278 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 5.0505 1.8026 -1.0263 31 1 4.4946 2.4995 0.5145 32 1 5.6035 1.1072 0.5160 33 1 5.3492 -3.5295 0.0046 34 1 2.8725 -7.5532 4.7927 35 1 0.9521 -4.9504 1.8405 36 1 1.7831 -5.4320 3.3391 37 1 1.1294 -2.9511 -0.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319904091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:46 Heat of formation + Delta-G solvation = 57.764427 kcal Electronic energy + Delta-G solvation = -26607.924892 eV Core-core repulsion = 22707.355444 eV Total energy + Delta-G solvation = -3900.569447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.74184 -39.33206 -38.34330 -38.11074 -36.74745 -36.12416 -35.51499 -33.24385 -33.09114 -31.46020 -30.43352 -29.09110 -26.83288 -25.78372 -25.15338 -24.04082 -21.11521 -20.50061 -19.78056 -19.38758 -18.52910 -18.38997 -17.89065 -17.51540 -17.05287 -16.44838 -16.33927 -16.10173 -15.33433 -14.86195 -14.73868 -14.55266 -14.43243 -14.37225 -14.31752 -14.02620 -13.66753 -13.49007 -13.24553 -13.15752 -13.11412 -13.02942 -12.90062 -12.79997 -12.65954 -12.61927 -12.16219 -11.98626 -11.92865 -11.78500 -11.69103 -11.34474 -10.68340 -10.22044 -10.06402 -9.55712 -8.18714 -5.76969 -0.54362 -0.39119 -0.24127 1.01953 1.24957 1.51609 1.59089 1.68203 1.96425 2.37933 2.40981 2.52743 2.73254 2.93506 2.99908 3.07354 3.16385 3.22200 3.59051 3.74869 3.82497 3.84548 4.20579 4.28912 4.30484 4.34584 4.41025 4.60792 4.67091 4.82076 4.84512 4.92701 4.98839 5.17696 5.35322 5.43356 5.60991 5.70331 6.26980 6.46376 6.63467 7.01672 7.22274 7.39433 8.86183 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.004485 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.382675 B = 6240.944214 C = 7014.927004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.132 3.868 3 N -0.264 5.264 4 N -0.399 5.399 5 C 0.103 3.897 6 C 0.325 3.675 7 N -0.524 5.524 8 C 0.258 3.742 9 C -0.763 4.763 10 S 2.702 3.298 11 O -0.985 6.985 12 O -0.983 6.983 13 N -0.861 5.861 14 C -0.339 4.339 15 H 0.114 0.886 16 C 0.010 3.990 17 N -0.901 5.901 18 Si 0.962 3.038 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.298 1.298 22 C 0.238 3.762 23 C 0.265 3.735 24 N -0.525 5.525 25 C 0.120 3.880 26 C -0.260 4.260 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.187 0.813 34 H 0.267 0.733 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 19.470 -4.407 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 N -0.077 5.077 4 N -0.187 5.187 5 C -0.036 4.036 6 C 0.085 3.915 7 N -0.240 5.240 8 C 0.086 3.914 9 C -0.854 4.854 10 S 2.793 3.207 11 O -0.975 6.975 12 O -0.972 6.972 13 N -0.693 5.693 14 C -0.468 4.468 15 H 0.132 0.868 16 C -0.192 4.192 17 N -0.541 5.541 18 Si 0.788 3.212 19 H -0.184 1.184 20 H -0.202 1.202 21 H -0.225 1.225 22 C 0.108 3.892 23 C -0.053 4.053 24 N -0.206 5.206 25 C 0.091 3.909 26 C -0.271 4.271 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.204 0.796 34 H 0.077 0.923 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.944 19.242 -5.150 20.014 hybrid contribution 0.734 -0.581 1.143 1.477 sum -1.210 18.661 -4.007 19.125 Atomic orbital electron populations 1.20626 0.81756 1.06063 1.05539 1.24246 0.98658 0.86748 0.95004 1.76708 0.86276 1.23274 1.21461 1.48537 1.05589 1.01350 1.63273 1.22117 0.83812 0.93218 1.04466 1.19581 0.91285 0.87197 0.93438 1.66912 1.33297 1.02924 1.20882 1.22648 0.95644 0.89648 0.83438 1.31494 1.01318 1.27773 1.24783 1.01289 0.72532 0.74430 0.72429 1.93473 1.49680 1.76869 1.77519 1.93510 1.41009 1.85303 1.77427 1.53017 1.11036 1.75930 1.29293 1.19442 0.85453 1.42783 0.99118 0.86832 1.25519 0.99645 0.95054 0.98990 1.70019 1.30940 1.32998 1.20179 0.85359 0.79567 0.77276 0.78989 1.18417 1.20215 1.22517 1.18747 0.82911 0.84893 1.02605 1.29985 0.89962 0.95882 0.89465 1.80899 1.13953 1.12945 1.12823 1.20871 0.99811 0.89793 0.80410 1.20681 0.94091 0.95516 1.16831 0.87685 0.87514 0.88530 0.89810 0.87460 0.88823 0.79582 0.92308 0.85145 0.85367 0.79666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.48 71.24 0.75 -0.17 16 2 C 0.13 2.79 7.44 44.77 0.33 3.12 16 3 N -0.26 -6.28 12.40 -43.75 -0.54 -6.82 16 4 N -0.40 -9.96 4.04 -366.54 -1.48 -11.44 16 5 C 0.10 1.71 11.44 127.77 1.46 3.18 16 6 C 0.33 9.48 7.97 134.12 1.07 10.55 16 7 N -0.52 -16.24 10.40 -192.96 -2.01 -18.25 16 8 C 0.26 8.03 10.65 84.88 0.90 8.93 16 9 C -0.76 -23.38 5.96 22.12 0.13 -23.25 16 10 S 2.70 101.08 5.61 -56.49 -0.32 100.76 16 11 O -0.99 -42.60 16.16 -128.00 -2.07 -44.67 16 12 O -0.98 -37.73 16.32 -128.00 -2.09 -39.82 16 13 N -0.86 -35.26 2.88 -352.51 -1.02 -36.27 16 14 C -0.34 -15.48 9.37 84.03 0.79 -14.69 16 15 H 0.11 5.11 7.41 -2.91 -0.02 5.09 16 16 C 0.01 0.48 4.88 84.86 0.41 0.89 16 17 N -0.90 -44.31 9.06 21.65 0.20 -44.12 16 18 Si 0.96 38.27 29.63 68.60 2.03 40.30 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.30 -12.46 7.11 99.48 0.71 -11.75 16 22 C 0.24 8.93 5.09 84.57 0.43 9.36 16 23 C 0.27 12.11 13.35 89.42 1.19 13.30 16 24 N -0.52 -26.40 18.55 20.03 0.37 -26.03 16 25 C 0.12 3.07 9.64 22.41 0.22 3.28 16 26 C -0.26 -6.81 6.35 -20.23 -0.13 -6.94 16 27 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.19 5.44 7.59 -2.91 -0.02 5.42 16 34 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 35 H 0.13 3.48 7.69 -2.39 -0.02 3.46 16 36 H 0.13 4.83 6.45 -2.39 -0.02 4.82 16 37 H 0.19 3.49 7.66 -2.91 -0.02 3.46 16 Total: -1.00 -70.71 342.94 1.77 -68.94 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.13 Total: 9.83 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 7.56 Total: 7.57 kcal Atomic # 7 Polarization: -138.44 SS G_CDS: -4.48 Total: -142.92 kcal Atomic # 8 Polarization: -80.33 SS G_CDS: -4.16 Total: -84.49 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 16 Polarization: 101.08 SS G_CDS: -0.32 Total: 100.76 kcal Total: -70.71 1.77 -68.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319904091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.704 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds