Wall clock time and date at job start Tue Mar 31 2020 19:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46954 * 2 1 4 4 N 1.31790 * 122.85761 * 269.95799 * 3 2 1 5 5 C 1.28969 * 117.20938 * 180.02562 * 4 3 2 6 6 S 1.70951 * 110.33017 * 359.75433 * 5 4 3 7 7 C 1.34513 * 122.85749 * 89.99807 * 3 2 1 8 8 N 1.39428 * 126.07772 * 359.94560 * 7 3 2 9 9 C 1.34777 * 119.99943 * 179.97438 * 8 7 3 10 10 O 1.21424 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.49130 * 119.99621 * 179.97438 * 9 8 7 12 12 O 1.21424 * 120.00420 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99971 * 179.97438 * 11 9 8 14 14 C 1.40302 * 119.99862 * 180.02562 * 13 11 9 15 15 C 1.40714 * 126.10289 * 359.97128 * 14 13 11 16 16 N 1.30876 * 108.37753 * 179.73889 * 15 14 13 17 17 N 1.40064 * 108.43320 * 0.44673 * 16 15 14 18 18 C 1.37301 * 126.05474 * 179.81430 * 17 16 15 19 19 H 1.08002 * 119.99622 * 179.68469 * 18 17 16 20 20 C 1.39003 * 119.99972 * 359.96620 * 18 17 16 21 21 N 1.31284 * 120.00043 * 359.72316 * 20 18 17 22 22 Si 1.86801 * 119.99884 * 179.72361 * 20 18 17 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46780 * 119.99905 * 22 20 18 25 25 H 1.48493 * 109.47151 * 239.99809 * 22 20 18 26 26 C 1.35786 * 126.09637 * 179.97438 * 14 13 11 27 27 H 1.08999 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47244 * 300.00306 * 1 2 3 29 29 H 1.09002 * 109.46734 * 60.00028 * 1 2 3 30 30 H 1.09001 * 109.47444 * 240.00450 * 2 1 3 31 31 H 1.08992 * 109.47138 * 119.99592 * 2 1 3 32 32 H 1.08001 * 124.83843 * 180.02562 * 5 4 3 33 33 H 0.97005 * 119.99942 * 359.97438 * 8 7 3 34 34 H 0.96996 * 119.99511 * 359.97438 * 13 11 9 35 35 H 1.08003 * 125.81078 * 0.02562 * 15 14 13 36 36 H 0.96995 * 119.99907 * 180.02562 * 21 20 18 37 37 H 1.07997 * 126.24880 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2714 2.0947 -1.1071 5 6 2.6996 3.3046 -0.9801 6 16 2.8369 3.7156 0.6735 7 6 2.2755 2.1089 1.1299 8 7 2.1075 1.6368 2.4311 9 6 2.3904 2.4352 3.4794 10 8 2.7920 3.5654 3.2908 11 6 2.2100 1.9303 4.8710 12 8 1.8079 0.8002 5.0596 13 7 2.4934 2.7285 5.9195 14 6 2.3242 2.2533 7.2287 15 6 1.8686 0.9730 7.5937 16 7 1.8482 0.8992 8.9002 17 7 2.2781 2.1268 9.4199 18 6 2.3911 2.4460 10.7505 19 1 2.7394 3.4255 11.0431 20 6 2.0626 1.5065 11.7209 21 7 1.6392 0.3158 11.3652 22 14 2.2236 1.9382 13.5312 23 1 2.7185 3.3318 13.6656 24 1 0.8974 1.8177 14.1886 25 1 3.1832 1.0080 14.1784 26 6 2.5710 2.9470 8.3696 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.9336 3.9656 -1.8015 33 1 1.7869 0.7337 2.5817 34 1 2.8150 3.6311 5.7688 35 1 1.5882 0.1838 6.9118 36 1 1.4096 -0.3396 12.0423 37 1 2.9327 3.9625 8.4340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319977034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:27 Heat of formation + Delta-G solvation = 65.294340 kcal Electronic energy + Delta-G solvation = -25010.594607 eV Core-core repulsion = 21110.351681 eV Total energy + Delta-G solvation = -3900.242926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09266 -40.12794 -39.57869 -38.22000 -35.74208 -34.40767 -33.46219 -33.24715 -30.43897 -29.17713 -28.13966 -26.15905 -25.19983 -23.95004 -23.50156 -21.36521 -20.92838 -20.11011 -19.59857 -18.54726 -17.98709 -17.52347 -16.79699 -16.28035 -16.17495 -15.59565 -15.24972 -15.01407 -14.55564 -14.34775 -14.13025 -14.07134 -13.90835 -13.79193 -13.21987 -13.10736 -12.62376 -12.19190 -11.87111 -11.75861 -11.63181 -11.53232 -11.38813 -11.36897 -11.12862 -10.99913 -10.58224 -10.46322 -9.78860 -9.41449 -9.33771 -9.22003 -8.98771 -8.37703 -8.23482 -6.91264 -6.68929 -4.36909 0.37931 0.90153 1.38827 1.58171 2.23439 2.57192 2.85617 2.99041 3.05148 3.11669 3.56745 3.56842 3.77861 4.05405 4.23751 4.38518 4.66867 4.80600 4.84219 4.90086 5.04665 5.10696 5.30448 5.55377 5.66952 5.80624 5.93130 6.05531 6.08762 6.22526 6.49657 6.64784 6.78699 6.81830 7.06395 7.32279 7.55470 7.70192 7.86267 8.05417 8.27747 8.56912 9.20783 9.49000 10.26717 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.031100 B = 0.002205 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.103235 B =12692.752395 C =13501.044412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.018 3.982 4 N -0.446 5.446 5 C -0.044 4.044 6 S 0.235 5.765 7 C -0.002 4.002 8 N -0.601 5.601 9 C 0.507 3.493 10 O -0.495 6.495 11 C 0.490 3.510 12 O -0.517 6.517 13 N -0.574 5.574 14 C -0.074 4.074 15 C -0.023 4.023 16 N -0.260 5.260 17 N -0.136 5.136 18 C -0.320 4.320 19 H 0.120 0.880 20 C 0.046 3.954 21 N -0.765 5.765 22 Si 0.937 3.063 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.076 4.076 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.198 0.802 33 H 0.432 0.568 34 H 0.411 0.589 35 H 0.178 0.822 36 H 0.276 0.724 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 4.614 -18.384 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.119 4.119 4 N -0.159 5.159 5 C -0.341 4.341 6 S 0.486 5.514 7 C -0.220 4.220 8 N -0.248 5.248 9 C 0.289 3.711 10 O -0.370 6.370 11 C 0.269 3.731 12 O -0.394 6.394 13 N -0.216 5.216 14 C -0.180 4.180 15 C -0.199 4.199 16 N -0.091 5.091 17 N 0.098 4.902 18 C -0.453 4.453 19 H 0.137 0.863 20 C -0.172 4.172 21 N -0.391 5.391 22 Si 0.761 3.239 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.227 4.227 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.214 0.786 33 H 0.273 0.727 34 H 0.246 0.754 35 H 0.195 0.805 36 H 0.087 0.913 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.118 4.368 -17.207 17.788 hybrid contribution 0.030 0.011 -0.098 0.103 sum 1.148 4.379 -17.305 17.888 Atomic orbital electron populations 1.21754 0.94211 1.02194 1.02366 1.20053 0.96288 0.88953 1.03405 1.20131 1.07281 0.99317 0.85142 1.66157 1.13097 1.06354 1.30293 1.28483 1.06179 0.96856 1.02589 1.84888 1.59956 1.07566 0.98977 1.23512 1.10147 0.99838 0.88489 1.42465 1.62850 1.18391 1.01090 1.20783 0.77963 0.85325 0.87038 1.90706 1.43073 1.18273 1.84933 1.18997 0.83304 0.86462 0.84295 1.90701 1.45854 1.18321 1.84520 1.42075 1.60002 1.16038 1.03477 1.17212 1.22142 0.97191 0.81442 1.24159 1.05692 0.96293 0.93765 1.78291 1.22862 1.01046 1.06874 1.44606 1.34196 1.06908 1.04473 1.20010 1.46589 1.01421 0.77250 0.86262 1.25691 0.95234 0.94750 1.01525 1.70209 1.30595 1.03362 1.34958 0.85720 0.78694 0.79396 0.80128 1.18566 1.19792 1.19804 1.21299 1.16590 0.98278 0.86582 0.91734 0.92667 0.92221 0.89681 0.90713 0.78575 0.72732 0.75406 0.80503 0.91281 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.05 -0.43 6.12 -27.88 -0.17 -0.60 16 3 C 0.02 0.20 6.03 -83.93 -0.51 -0.31 16 4 N -0.45 -5.14 10.52 -11.72 -0.12 -5.26 16 5 C -0.04 -0.41 12.21 51.56 0.63 0.22 16 6 S 0.24 2.49 20.45 -107.50 -2.20 0.29 16 7 C 0.00 -0.02 7.17 -15.41 -0.11 -0.13 16 8 N -0.60 -7.24 5.38 -11.13 -0.06 -7.30 16 9 C 0.51 7.09 7.84 -11.74 -0.09 7.00 16 10 O -0.50 -7.18 14.09 5.43 0.08 -7.11 16 11 C 0.49 8.15 7.85 -11.73 -0.09 8.05 16 12 O -0.52 -9.68 13.62 5.43 0.07 -9.60 16 13 N -0.57 -9.99 5.45 -10.51 -0.06 -10.05 16 14 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 15 C -0.02 -0.58 10.84 -17.02 -0.18 -0.76 16 16 N -0.26 -7.22 10.39 30.81 0.32 -6.90 16 17 N -0.14 -3.56 3.73 -11.40 -0.04 -3.60 16 18 C -0.32 -8.11 10.25 -14.82 -0.15 -8.26 16 19 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 20 C 0.05 1.14 5.50 -17.50 -0.10 1.04 16 21 N -0.77 -20.54 11.81 55.50 0.66 -19.89 16 22 Si 0.94 18.17 29.55 -169.99 -5.02 13.14 16 23 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 C -0.08 -1.70 11.50 -16.38 -0.19 -1.89 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.60 7.22 -51.93 -0.37 0.22 16 32 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.43 4.65 7.08 -40.82 -0.29 4.36 16 34 H 0.41 6.01 8.29 -40.82 -0.34 5.67 16 35 H 0.18 4.23 5.92 -52.48 -0.31 3.92 16 36 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -31.68 341.75 -5.80 -37.48 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -3.40 Total: 12.35 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.17 Total: 1.31 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.69 Total: -53.00 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.15 Total: -16.71 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.02 Total: 13.14 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.20 Total: 0.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.68 -5.80 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319977034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.771 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds