Wall clock time and date at job start Tue Mar 31 2020 19:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47148 * 2 1 4 4 C 1.33534 * 125.96881 * 90.00485 * 3 2 1 5 5 N 1.31916 * 114.56611 * 179.97438 * 4 3 2 6 6 C 1.29690 * 116.92520 * 0.02562 * 5 4 3 7 7 N 1.38746 * 124.94009 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00427 * 0.02562 * 7 6 5 9 9 O 1.21398 * 120.00147 * 0.02562 * 8 7 6 10 10 C 1.49170 * 120.00376 * 180.02562 * 8 7 6 11 11 O 1.21424 * 119.99927 * 359.97438 * 10 8 7 12 12 N 1.34769 * 120.00380 * 180.02562 * 10 8 7 13 13 C 1.40302 * 120.00173 * 180.02562 * 12 10 8 14 14 C 1.40719 * 126.10234 * 359.97438 * 13 12 10 15 15 N 1.30876 * 108.38130 * 179.74057 * 14 13 12 16 16 N 1.40063 * 108.42908 * 0.41055 * 15 14 13 17 17 C 1.37301 * 126.05067 * 179.85123 * 16 15 14 18 18 H 1.08002 * 119.99622 * 179.68466 * 17 16 15 19 19 C 1.39003 * 119.99972 * 359.96617 * 17 16 15 20 20 N 1.31284 * 120.00043 * 359.72316 * 19 17 16 21 21 Si 1.86801 * 119.99884 * 179.72361 * 19 17 16 22 22 H 1.48504 * 109.46920 * 59.99981 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47038 * 299.99751 * 21 19 17 25 25 C 1.35786 * 126.10056 * 179.97438 * 13 12 10 26 26 S 1.70968 * 110.11206 * 0.26154 * 6 5 4 27 27 H 1.09000 * 109.47582 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47340 * 300.00074 * 1 2 3 29 29 H 1.09005 * 109.46906 * 59.99676 * 1 2 3 30 30 H 1.09004 * 109.46689 * 240.00235 * 2 1 3 31 31 H 1.08997 * 109.46987 * 120.00709 * 2 1 3 32 32 H 1.08001 * 122.71455 * 359.97438 * 4 3 2 33 33 H 0.97005 * 119.99718 * 180.02562 * 7 6 5 34 34 H 0.97001 * 120.00380 * 359.97438 * 12 10 8 35 35 H 1.08003 * 125.80709 * 0.02562 * 14 13 12 36 36 H 0.97004 * 119.99619 * 180.02562 * 20 19 17 37 37 H 1.08007 * 126.24995 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2938 2.1602 1.0807 5 7 2.7254 3.3791 0.8199 6 6 2.8409 3.7064 -0.4297 7 7 3.2780 4.9398 -0.8909 8 6 3.6209 5.9043 -0.0143 9 8 3.5477 5.6938 1.1791 10 6 4.0903 7.2305 -0.5102 11 8 4.1639 7.4410 -1.7038 12 7 4.4336 8.1948 0.3665 13 6 4.8746 9.4423 -0.1000 14 6 5.0075 9.8238 -1.4480 15 7 5.4388 11.0589 -1.4868 16 7 5.6069 11.5107 -0.1718 17 6 6.0478 12.7552 0.2049 18 1 6.1365 13.0024 1.2525 19 6 6.3743 13.6990 -0.7621 20 7 6.2663 13.3984 -2.0355 21 14 6.9667 15.3948 -0.2496 22 1 8.2070 15.2631 0.5565 23 1 7.2476 16.2077 -1.4602 24 1 5.9171 16.0614 0.5623 25 6 5.2493 10.4971 0.6687 26 16 2.3700 2.3991 -1.4257 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.1627 1.7901 2.0869 33 1 3.3368 5.1079 -1.8445 34 1 4.3752 8.0267 1.3200 35 1 4.7865 9.2044 -2.3047 36 1 6.4945 14.0569 -2.7102 37 1 5.2623 10.5279 1.7482 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320730223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:24 Heat of formation + Delta-G solvation = 74.530720 kcal Electronic energy + Delta-G solvation = -24504.032073 eV Core-core repulsion = 20604.189667 eV Total energy + Delta-G solvation = -3899.842406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01335 -39.99970 -39.28836 -37.99915 -35.75471 -34.48905 -33.90853 -33.21088 -30.38137 -28.94112 -28.10821 -26.40077 -25.11903 -24.03745 -23.08443 -21.48688 -20.94943 -19.76928 -19.55929 -19.02990 -17.67967 -17.35090 -16.83677 -16.11309 -15.87814 -15.53797 -15.20599 -15.07312 -14.81562 -14.43794 -14.20547 -14.04596 -13.72516 -13.71424 -13.15434 -13.03934 -12.80334 -12.04728 -12.01715 -11.78192 -11.67020 -11.38461 -11.30128 -11.22901 -11.00145 -10.97795 -10.60489 -10.37953 -9.88114 -9.50115 -9.27482 -9.17415 -8.93188 -8.45101 -8.18210 -6.85019 -6.64259 -4.32142 0.38512 0.64736 1.36073 1.54397 2.34464 2.67233 2.92390 3.01472 3.05479 3.25382 3.47961 3.64086 3.79079 4.30154 4.31535 4.44216 4.59172 4.62578 4.87435 4.91738 4.94499 5.13888 5.28179 5.44853 5.59481 5.64367 5.78317 5.97221 6.14936 6.28943 6.54108 6.70948 6.83478 6.85898 7.11364 7.40159 7.71699 7.77454 7.95943 8.11500 8.36309 8.62456 9.25941 9.54349 10.31338 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.053492 B = 0.001876 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.320991 B =14924.927684 C =15338.040837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.040 4.040 3 C -0.242 4.242 4 C 0.068 3.932 5 N -0.475 5.475 6 C 0.270 3.730 7 N -0.613 5.613 8 C 0.511 3.489 9 O -0.455 6.455 10 C 0.489 3.511 11 O -0.520 6.520 12 N -0.576 5.576 13 C -0.073 4.073 14 C -0.024 4.024 15 N -0.260 5.260 16 N -0.136 5.136 17 C -0.322 4.322 18 H 0.118 0.882 19 C 0.047 3.953 20 N -0.766 5.766 21 Si 0.937 3.063 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.266 1.266 25 C -0.076 4.076 26 S 0.131 5.869 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.435 0.565 34 H 0.411 0.589 35 H 0.178 0.822 36 H 0.277 0.723 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -22.140 2.595 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 C -0.364 4.364 4 C -0.083 4.083 5 N -0.196 5.196 6 C -0.098 4.098 7 N -0.267 5.267 8 C 0.290 3.710 9 O -0.322 6.322 10 C 0.269 3.731 11 O -0.398 6.398 12 N -0.218 5.218 13 C -0.178 4.178 14 C -0.200 4.200 15 N -0.091 5.091 16 N 0.097 4.903 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.393 5.393 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.227 4.227 26 S 0.382 5.618 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.195 0.805 33 H 0.275 0.725 34 H 0.246 0.754 35 H 0.195 0.805 36 H 0.088 0.912 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.747 -20.668 0.958 22.092 hybrid contribution -0.070 -0.213 1.712 1.727 sum -7.817 -20.880 2.671 22.455 Atomic orbital electron populations 1.21823 0.94311 1.02028 1.02593 1.19929 0.96027 0.88620 1.03410 1.25787 1.13961 1.02788 0.93894 1.21572 0.99120 0.87546 1.00105 1.66573 1.19358 1.17789 1.15894 1.23563 1.01723 0.92152 0.92381 1.42687 1.63323 1.08556 1.12086 1.20671 0.78519 0.85432 0.86394 1.90861 1.46624 1.79922 1.14806 1.19232 0.82687 0.84459 0.86769 1.90681 1.53790 1.80245 1.15088 1.42085 1.59521 1.10593 1.09623 1.17227 1.20671 0.86218 0.93724 1.24155 1.05677 0.94878 0.95279 1.78279 1.23852 1.09814 0.97158 1.44575 1.34380 1.08130 1.03180 1.19906 1.44872 0.85915 0.94708 0.86397 1.25675 0.95984 1.00718 0.94755 1.70196 1.34545 1.34593 0.99921 0.85859 0.79615 0.79820 0.78684 1.19057 1.20056 1.19062 1.21304 1.15557 0.90087 0.95779 1.83963 1.63209 1.04716 1.09870 0.91953 0.92189 0.92484 0.90689 0.89641 0.80532 0.72506 0.75409 0.80493 0.91232 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.04 -0.22 6.47 -27.89 -0.18 -0.40 16 3 C -0.24 -2.06 5.84 -35.96 -0.21 -2.27 16 4 C 0.07 0.71 11.24 -19.16 -0.22 0.50 16 5 N -0.48 -6.65 8.64 -15.17 -0.13 -6.78 16 6 C 0.27 3.40 8.01 -87.55 -0.70 2.70 16 7 N -0.61 -7.92 5.39 -13.59 -0.07 -7.99 16 8 C 0.51 7.98 7.84 -11.72 -0.09 7.89 16 9 O -0.46 -7.96 15.10 5.46 0.08 -7.88 16 10 C 0.49 8.62 7.85 -11.72 -0.09 8.53 16 11 O -0.52 -10.08 13.62 5.43 0.07 -10.01 16 12 N -0.58 -10.63 5.45 -10.50 -0.06 -10.69 16 13 C -0.07 -1.64 6.90 -83.92 -0.58 -2.22 16 14 C -0.02 -0.61 10.84 -17.02 -0.18 -0.80 16 15 N -0.26 -7.35 10.39 30.81 0.32 -7.03 16 16 N -0.14 -3.65 3.73 -11.40 -0.04 -3.70 16 17 C -0.32 -8.31 10.25 -14.82 -0.15 -8.46 16 18 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 19 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -20.87 11.81 55.50 0.66 -20.22 16 21 Si 0.94 18.47 29.55 -169.99 -5.02 13.45 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.08 -1.75 11.50 -16.38 -0.19 -1.94 16 26 S 0.13 1.17 23.22 -107.50 -2.50 -1.33 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.43 4.63 8.29 -40.82 -0.34 4.29 16 34 H 0.41 6.54 8.29 -40.82 -0.34 6.20 16 35 H 0.18 4.32 5.92 -52.48 -0.31 4.01 16 36 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -33.50 345.80 -7.30 -40.80 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -3.49 Total: 11.96 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.32 Total: 4.22 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.67 Total: -56.42 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.16 Total: -17.89 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.50 Total: -1.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.50 -7.30 -40.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320730223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.327 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds