Wall clock time and date at job start Tue Mar 31 2020 19:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47148 * 2 1 4 4 C 1.33534 * 125.96881 * 90.00485 * 3 2 1 5 5 N 1.31916 * 114.56611 * 179.97438 * 4 3 2 6 6 C 1.29690 * 116.92520 * 0.02562 * 5 4 3 7 7 N 1.38746 * 124.94009 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00427 * 0.02562 * 7 6 5 9 9 O 1.21398 * 120.00147 * 0.02562 * 8 7 6 10 10 C 1.49170 * 120.00376 * 180.02562 * 8 7 6 11 11 O 1.21424 * 119.99927 * 359.97438 * 10 8 7 12 12 N 1.34769 * 120.00380 * 180.02562 * 10 8 7 13 13 C 1.40302 * 120.00173 * 180.02562 * 12 10 8 14 14 C 1.40719 * 126.10234 * 359.97438 * 13 12 10 15 15 N 1.30876 * 108.38130 * 179.74057 * 14 13 12 16 16 N 1.40063 * 108.42908 * 0.41055 * 15 14 13 17 17 C 1.37301 * 126.05067 * 179.85123 * 16 15 14 18 18 H 1.08002 * 119.99622 * 179.68466 * 17 16 15 19 19 C 1.39003 * 119.99972 * 359.96617 * 17 16 15 20 20 N 1.31284 * 120.00043 * 359.72316 * 19 17 16 21 21 Si 1.86801 * 119.99884 * 179.72361 * 19 17 16 22 22 H 1.48504 * 109.46920 * 59.99981 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47038 * 299.99751 * 21 19 17 25 25 C 1.35786 * 126.10056 * 179.97438 * 13 12 10 26 26 S 1.70968 * 110.11206 * 0.26154 * 6 5 4 27 27 H 1.09000 * 109.47582 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47340 * 300.00074 * 1 2 3 29 29 H 1.09005 * 109.46906 * 59.99676 * 1 2 3 30 30 H 1.09004 * 109.46689 * 240.00235 * 2 1 3 31 31 H 1.08997 * 109.46987 * 120.00709 * 2 1 3 32 32 H 1.08001 * 122.71455 * 359.97438 * 4 3 2 33 33 H 0.97005 * 119.99718 * 180.02562 * 7 6 5 34 34 H 0.97001 * 120.00380 * 359.97438 * 12 10 8 35 35 H 1.08003 * 125.80709 * 0.02562 * 14 13 12 36 36 H 0.97004 * 119.99619 * 180.02562 * 20 19 17 37 37 H 1.08007 * 126.24995 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2938 2.1602 1.0807 5 7 2.7254 3.3791 0.8199 6 6 2.8409 3.7064 -0.4297 7 7 3.2780 4.9398 -0.8909 8 6 3.6209 5.9043 -0.0143 9 8 3.5477 5.6938 1.1791 10 6 4.0903 7.2305 -0.5102 11 8 4.1639 7.4410 -1.7038 12 7 4.4336 8.1948 0.3665 13 6 4.8746 9.4423 -0.1000 14 6 5.0075 9.8238 -1.4480 15 7 5.4388 11.0589 -1.4868 16 7 5.6069 11.5107 -0.1718 17 6 6.0478 12.7552 0.2049 18 1 6.1365 13.0024 1.2525 19 6 6.3743 13.6990 -0.7621 20 7 6.2663 13.3984 -2.0355 21 14 6.9667 15.3948 -0.2496 22 1 8.2070 15.2631 0.5565 23 1 7.2476 16.2077 -1.4602 24 1 5.9171 16.0614 0.5623 25 6 5.2493 10.4971 0.6687 26 16 2.3700 2.3991 -1.4257 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.1627 1.7901 2.0869 33 1 3.3368 5.1079 -1.8445 34 1 4.3752 8.0267 1.3200 35 1 4.7865 9.2044 -2.3047 36 1 6.4945 14.0569 -2.7102 37 1 5.2623 10.5279 1.7482 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320730223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:23 Heat of formation + Delta-G solvation = 51.033515 kcal Electronic energy + Delta-G solvation = -24505.050988 eV Core-core repulsion = 20604.189667 eV Total energy + Delta-G solvation = -3900.861322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.30173 -41.53645 -40.55379 -39.39256 -36.87242 -35.93062 -35.03974 -34.63878 -32.31463 -30.08588 -29.51430 -27.64404 -26.69045 -25.14363 -23.89861 -22.97357 -22.39043 -21.36865 -20.73352 -20.28337 -19.33449 -18.47495 -17.86265 -17.44854 -17.33109 -17.13804 -16.76023 -16.10845 -15.83125 -15.68305 -15.35151 -15.26271 -14.89522 -14.87528 -14.75103 -14.49415 -13.51962 -13.42670 -13.41056 -13.02398 -12.89494 -12.71224 -12.63309 -12.42996 -12.13311 -12.01910 -11.95702 -11.71940 -11.07546 -11.03980 -10.87642 -10.37520 -10.26244 -10.15615 -9.29568 -8.66132 -8.49608 -6.27808 -0.52676 -0.18901 0.29071 0.59862 1.16163 1.28925 1.41410 1.57118 1.65925 1.82752 2.04932 2.09390 2.33636 2.47908 2.77644 3.06946 3.29365 3.61766 3.90575 4.15895 4.37868 4.45374 4.49545 4.57820 4.66099 4.83589 4.91747 4.96694 5.09486 5.09815 5.16508 5.22488 5.27235 5.40975 5.57524 5.89686 6.11755 6.29273 6.49041 6.66833 6.85571 6.94947 7.39245 7.60976 8.49262 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.053492 B = 0.001876 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.320991 B =14924.927684 C =15338.040837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.222 4.222 4 C 0.041 3.959 5 N -0.509 5.509 6 C 0.226 3.774 7 N -0.603 5.603 8 C 0.523 3.477 9 O -0.476 6.476 10 C 0.496 3.504 11 O -0.536 6.536 12 N -0.576 5.576 13 C -0.059 4.059 14 C -0.045 4.045 15 N -0.307 5.307 16 N -0.162 5.162 17 C -0.354 4.354 18 H 0.142 0.858 19 C -0.004 4.004 20 N -0.820 5.820 21 Si 1.019 2.981 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.254 1.254 25 C -0.073 4.073 26 S 0.192 5.808 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.194 0.806 33 H 0.443 0.557 34 H 0.424 0.576 35 H 0.179 0.821 36 H 0.278 0.722 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.876 -24.073 3.718 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 C -0.345 4.345 4 C -0.109 4.109 5 N -0.231 5.231 6 C -0.140 4.140 7 N -0.257 5.257 8 C 0.301 3.699 9 O -0.345 6.345 10 C 0.277 3.723 11 O -0.414 6.414 12 N -0.220 5.220 13 C -0.166 4.166 14 C -0.220 4.220 15 N -0.139 5.139 16 N 0.071 4.929 17 C -0.485 4.485 18 H 0.159 0.841 19 C -0.216 4.216 20 N -0.447 5.447 21 Si 0.838 3.162 22 H -0.178 1.178 23 H -0.202 1.202 24 H -0.178 1.178 25 C -0.224 4.224 26 S 0.443 5.557 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.211 0.789 33 H 0.285 0.715 34 H 0.262 0.738 35 H 0.195 0.805 36 H 0.088 0.912 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.391 -22.661 2.081 24.254 hybrid contribution -0.014 0.013 1.341 1.341 sum -8.405 -22.648 3.422 24.398 Atomic orbital electron populations 1.21821 0.93760 1.03050 1.02040 1.20132 0.96327 0.86668 1.05004 1.26343 1.11006 1.03775 0.93346 1.21839 1.00516 0.87012 1.01563 1.66511 1.19629 1.19687 1.17308 1.23705 1.04124 0.92762 0.93406 1.42454 1.62639 1.08527 1.12039 1.20039 0.78675 0.84907 0.86301 1.90856 1.48021 1.80147 1.15484 1.19672 0.81222 0.85065 0.86349 1.90672 1.53911 1.80788 1.16008 1.41997 1.60022 1.09456 1.10548 1.17254 1.19066 0.87577 0.92657 1.24283 1.06451 0.94624 0.96668 1.78172 1.25453 1.11198 0.99053 1.44842 1.35766 1.09252 1.03090 1.20634 1.45558 0.86157 0.96170 0.84082 1.26874 0.95345 1.05022 0.94393 1.70366 1.36586 1.36293 1.01460 0.84649 0.79474 0.73830 0.78261 1.17781 1.20158 1.17799 1.21997 1.13783 0.89199 0.97392 1.83764 1.61241 1.02204 1.08480 0.90211 0.92759 0.93063 0.89264 0.87889 0.78917 0.71488 0.73791 0.80470 0.91180 0.79483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 71.98 0.71 -0.36 16 2 C -0.04 -0.31 6.47 29.85 0.19 -0.12 16 3 C -0.22 -3.23 5.84 24.62 0.14 -3.08 16 4 C 0.04 0.80 11.24 83.61 0.94 1.74 16 5 N -0.51 -13.89 8.64 -201.90 -1.74 -15.64 16 6 C 0.23 5.49 8.01 179.27 1.44 6.92 16 7 N -0.60 -15.27 5.39 -315.26 -1.70 -16.97 16 8 C 0.52 16.20 7.84 87.18 0.68 16.89 16 9 O -0.48 -16.55 15.10 -3.39 -0.05 -16.60 16 10 C 0.50 17.48 7.85 87.18 0.68 18.17 16 11 O -0.54 -20.95 13.62 -3.48 -0.05 -20.99 16 12 N -0.58 -21.05 5.45 -305.45 -1.66 -22.72 16 13 C -0.06 -2.70 6.90 37.82 0.26 -2.44 16 14 C -0.04 -2.34 10.84 85.44 0.93 -1.41 16 15 N -0.31 -18.01 10.39 -56.43 -0.59 -18.60 16 16 N -0.16 -8.83 3.73 -189.97 -0.71 -9.54 16 17 C -0.35 -18.43 10.25 84.02 0.86 -17.57 16 18 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 19 C 0.00 -0.20 5.50 84.96 0.47 0.27 16 20 N -0.82 -46.23 11.81 21.66 0.26 -45.98 16 21 Si 1.02 37.83 29.55 68.60 2.03 39.85 16 22 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 23 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 24 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.07 -3.34 11.50 83.41 0.96 -2.38 16 26 S 0.19 2.99 23.22 -56.49 -1.31 1.68 16 27 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.19 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.44 9.20 8.29 -92.70 -0.77 8.43 16 34 H 0.42 13.16 8.29 -92.71 -0.77 12.39 16 35 H 0.18 9.01 5.92 -2.91 -0.02 8.99 16 36 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -75.35 345.80 2.37 -72.98 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.37 Total: 35.92 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 8.27 Total: 16.60 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -6.15 Total: -129.44 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.10 Total: -37.60 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.31 Total: 1.68 kcal Total: -75.35 2.37 -72.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320730223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.014 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds