Wall clock time and date at job start Tue Mar 31 2020 19:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31904 * 122.71997 * 2 1 4 4 C 1.29684 * 116.93075 * 180.02562 * 3 2 1 5 5 N 1.38746 * 124.95154 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00427 * 179.97438 * 5 4 3 7 7 O 1.21398 * 120.00147 * 0.02562 * 6 5 4 8 8 C 1.49170 * 120.00376 * 180.02562 * 6 5 4 9 9 O 1.21424 * 119.99927 * 359.97438 * 8 6 5 10 10 N 1.34769 * 120.00380 * 180.02562 * 8 6 5 11 11 C 1.40302 * 120.00173 * 180.02562 * 10 8 6 12 12 C 1.40719 * 126.10234 * 359.97438 * 11 10 8 13 13 N 1.30876 * 108.38130 * 179.74057 * 12 11 10 14 14 N 1.40063 * 108.42908 * 0.41055 * 13 12 11 15 15 C 1.37301 * 126.05067 * 179.85123 * 14 13 12 16 16 H 1.08002 * 119.99622 * 179.68466 * 15 14 13 17 17 C 1.39003 * 119.99972 * 359.96617 * 15 14 13 18 18 N 1.31284 * 120.00043 * 359.72316 * 17 15 14 19 19 Si 1.86801 * 119.99884 * 179.72361 * 17 15 14 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46780 * 119.99905 * 19 17 15 22 22 H 1.48493 * 109.47151 * 239.99809 * 19 17 15 23 23 C 1.35786 * 126.10056 * 179.97438 * 11 10 8 24 24 S 1.70980 * 110.10659 * 0.26162 * 4 3 2 25 25 C 1.33532 * 122.71491 * 180.02562 * 2 1 3 26 26 C 1.50702 * 125.96978 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.46834 * 89.97727 * 1 2 3 28 28 H 1.09000 * 109.47168 * 209.98001 * 1 2 3 29 29 H 1.09005 * 109.47041 * 329.97657 * 1 2 3 30 30 H 0.97005 * 119.99718 * 0.02562 * 5 4 3 31 31 H 0.97001 * 120.00380 * 359.97438 * 10 8 6 32 32 H 1.08003 * 125.80709 * 0.02562 * 12 11 10 33 33 H 0.97004 * 119.99619 * 180.02562 * 18 17 15 34 34 H 1.08007 * 126.24995 * 0.02562 * 23 11 10 35 35 H 1.08995 * 109.47500 * 89.99921 * 26 25 2 36 36 H 1.09004 * 109.46716 * 209.99922 * 26 25 2 37 37 H 1.09001 * 109.47342 * 329.99302 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1097 0.0000 4 6 3.5102 0.9789 -0.0005 5 7 4.4157 2.0302 -0.0011 6 6 5.7398 1.7791 -0.0011 7 8 6.1404 0.6331 -0.0010 8 6 6.7134 2.9093 -0.0012 9 8 6.3128 4.0556 -0.0017 10 7 8.0375 2.6583 -0.0017 11 6 8.9531 3.7213 -0.0012 12 6 8.6327 5.0916 -0.0007 13 7 9.7481 5.7762 0.0053 14 7 10.8206 4.8754 -0.0007 15 6 12.1533 5.2057 -0.0001 16 1 12.9024 4.4277 0.0001 17 6 12.5383 6.5413 0.0062 18 7 11.6276 7.4870 0.0061 19 14 14.3514 6.9906 0.0149 20 1 15.1687 5.7508 0.0141 21 1 14.6681 7.7936 -1.1936 22 1 14.6588 7.7848 1.2313 23 6 10.3065 3.6115 -0.0011 24 16 3.9330 -0.6777 -0.0084 25 6 2.2287 -1.1235 -0.0005 26 6 1.6809 -2.5274 -0.0017 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.0957 2.9459 -0.0008 31 1 8.3575 1.7426 -0.0016 32 1 7.6360 5.5074 -0.0002 33 1 11.8964 8.4190 0.0102 34 1 10.8726 2.6917 -0.0018 35 1 1.5492 -2.8652 -1.0296 36 1 2.3778 -3.1897 0.5120 37 1 0.7196 -2.5428 0.5119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322304153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:30 Heat of formation + Delta-G solvation = 46.752477 kcal Electronic energy + Delta-G solvation = -24652.823140 eV Core-core repulsion = 20751.776178 eV Total energy + Delta-G solvation = -3901.046961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.41139 -41.55327 -40.83002 -39.71464 -36.95358 -35.94322 -35.02711 -33.49440 -32.32225 -30.49963 -30.01014 -27.85939 -26.70656 -25.72958 -24.38159 -22.98421 -22.39893 -21.41093 -20.89083 -19.44379 -19.41292 -18.70606 -18.08043 -17.53698 -17.45962 -17.12943 -16.81614 -16.31425 -15.85008 -15.55497 -15.38583 -14.94593 -14.93446 -14.89766 -13.99325 -13.91757 -13.81915 -13.58895 -13.53996 -13.43888 -13.16676 -12.95751 -12.84071 -12.77281 -12.06791 -12.02800 -11.85972 -11.76872 -11.11656 -10.90360 -10.86139 -10.79678 -10.17492 -10.16510 -9.21722 -8.67112 -8.50203 -6.28278 -0.60094 -0.00115 0.16108 0.65798 0.93456 1.24642 1.41438 1.55377 1.60053 1.77211 1.95288 2.06334 2.28725 2.44211 2.76834 3.06877 3.28066 3.46060 4.09507 4.19324 4.37545 4.44723 4.49612 4.66103 4.74480 4.82410 4.86008 4.89955 4.96943 5.03772 5.11283 5.12800 5.26617 5.39460 5.46591 5.89736 6.05370 6.23707 6.40176 6.65479 6.68285 6.91533 7.39343 7.60620 8.48982 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.047907 B = 0.001982 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.330803 B =14126.127639 C =14689.995576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.058 3.942 3 N -0.519 5.519 4 C 0.211 3.789 5 N -0.592 5.592 6 C 0.529 3.471 7 O -0.491 6.491 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.569 5.569 11 C -0.059 4.059 12 C -0.046 4.046 13 N -0.309 5.309 14 N -0.163 5.163 15 C -0.351 4.351 16 H 0.144 0.856 17 C -0.006 4.006 18 N -0.820 5.820 19 Si 1.019 2.981 20 H -0.240 1.240 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.068 4.068 24 S 0.240 5.760 25 C -0.268 4.268 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.438 0.562 31 H 0.428 0.572 32 H 0.176 0.824 33 H 0.278 0.722 34 H 0.192 0.808 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.577 -19.798 -0.019 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.243 5.243 4 C -0.155 4.155 5 N -0.242 5.242 6 C 0.309 3.691 7 O -0.365 6.365 8 C 0.280 3.720 9 O -0.412 6.412 10 N -0.214 5.214 11 C -0.166 4.166 12 C -0.221 4.221 13 N -0.140 5.140 14 N 0.070 4.930 15 C -0.482 4.482 16 H 0.161 0.839 17 C -0.218 4.218 18 N -0.448 5.448 19 Si 0.838 3.162 20 H -0.163 1.163 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.220 4.220 24 S 0.490 5.510 25 C -0.390 4.390 26 C -0.129 4.129 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.279 0.721 31 H 0.266 0.734 32 H 0.193 0.807 33 H 0.088 0.912 34 H 0.209 0.791 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.247 -18.342 -0.022 23.225 hybrid contribution -0.666 0.297 -0.004 0.729 sum -14.913 -18.044 -0.026 23.409 Atomic orbital electron populations 1.20465 0.84857 1.04212 1.03769 1.20295 0.99135 0.85260 1.02595 1.66129 1.02490 1.34349 1.21307 1.23310 0.90785 0.94625 1.06783 1.42221 1.03493 1.10059 1.68458 1.20004 0.82441 0.89407 0.77199 1.90699 1.77511 1.21555 1.46738 1.19292 0.83281 0.88206 0.81190 1.90717 1.78442 1.22147 1.49895 1.41910 1.03064 1.09451 1.66982 1.17209 0.88222 0.87344 1.23785 1.24280 0.98403 0.91412 1.08031 1.78191 0.92349 1.16022 1.27425 1.44873 1.05825 1.02746 1.39585 1.20714 0.78604 0.95197 1.53691 0.83885 1.26884 1.05932 0.94911 0.94055 1.70380 1.36385 1.01244 1.36795 0.84531 0.73903 0.79596 0.78180 1.16287 1.19806 1.19834 1.22026 0.92375 0.90554 1.17008 1.84783 1.03587 0.94934 1.67658 1.26626 0.97062 1.02444 1.12859 1.20353 1.01864 0.86781 1.03939 0.89730 0.88097 0.91283 0.72080 0.73379 0.80718 0.91239 0.79131 0.89396 0.90442 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.06 71.24 0.72 -0.23 16 2 C 0.06 1.18 6.74 41.48 0.28 1.46 16 3 N -0.52 -13.40 10.58 -189.74 -2.01 -15.41 16 4 C 0.21 5.47 8.18 179.28 1.47 6.93 16 5 N -0.59 -15.47 5.39 -315.25 -1.70 -17.17 16 6 C 0.53 14.73 7.84 87.18 0.68 15.41 16 7 O -0.49 -13.58 13.93 -3.39 -0.05 -13.62 16 8 C 0.50 16.63 7.85 87.18 0.68 17.31 16 9 O -0.53 -20.77 13.62 -3.48 -0.05 -20.81 16 10 N -0.57 -19.25 5.45 -305.45 -1.66 -20.91 16 11 C -0.06 -2.59 6.90 37.82 0.26 -2.33 16 12 C -0.05 -2.35 10.84 85.44 0.93 -1.42 16 13 N -0.31 -17.87 10.39 -56.43 -0.59 -18.46 16 14 N -0.16 -8.68 3.73 -189.97 -0.71 -9.39 16 15 C -0.35 -17.90 10.25 84.02 0.86 -17.04 16 16 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 17 C -0.01 -0.28 5.50 84.96 0.47 0.18 16 18 N -0.82 -46.02 11.81 21.66 0.26 -45.77 16 19 Si 1.02 37.42 29.55 68.60 2.03 39.45 16 20 H -0.24 -7.87 7.11 99.48 0.71 -7.16 16 21 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 23 C -0.07 -3.02 11.50 83.41 0.96 -2.06 16 24 S 0.24 5.23 20.21 -56.49 -1.14 4.09 16 25 C -0.27 -4.71 6.58 24.62 0.16 -4.55 16 26 C -0.07 -0.65 10.09 71.24 0.72 0.07 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 0.73 6.70 -2.39 -0.02 0.72 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.44 10.94 8.29 -92.70 -0.77 10.17 16 31 H 0.43 11.55 8.29 -92.71 -0.77 10.78 16 32 H 0.18 8.85 5.92 -2.91 -0.02 8.83 16 33 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.19 6.56 8.06 -2.91 -0.02 6.54 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.10 0.53 6.75 -2.39 -0.02 0.52 16 Total: -1.00 -71.66 341.01 2.21 -69.45 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.36 Total: 34.82 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 8.19 Total: 13.74 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -6.41 Total: -127.10 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.09 Total: -34.44 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.14 Total: 4.09 kcal Total: -71.66 2.21 -69.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322304153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.200 kcal (2) G-P(sol) polarization free energy of solvation -71.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds