Wall clock time and date at job start Tue Mar 31 2020 19:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48500 * 109.47494 * 270.00122 * 3 2 1 5 5 H 1.48504 * 109.46800 * 29.99895 * 3 2 1 6 6 H 1.48499 * 109.47588 * 149.99670 * 3 2 1 7 7 C 1.38948 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99709 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00325 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00013 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00231 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99905 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47132 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00203 * 180.02562 * 13 12 10 15 15 O 1.21591 * 119.99933 * 359.97438 * 14 13 12 16 16 C 1.47524 * 120.00088 * 180.02562 * 14 13 12 17 17 C 1.36596 * 125.76953 * 179.97438 * 16 14 13 18 18 N 1.34817 * 106.83970 * 179.97438 * 17 16 14 19 19 C 1.46496 * 126.59332 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.46989 * 125.00198 * 19 18 17 21 21 C 1.33380 * 125.20446 * 89.71456 * 20 19 18 22 22 C 1.38424 * 114.91979 * 179.85799 * 21 20 19 23 23 C 1.33387 * 114.92317 * 0.43559 * 22 21 20 24 24 S 1.75886 * 109.59281 * 359.76596 * 23 22 21 25 25 N 1.40206 * 106.80733 * 0.25995 * 18 17 16 26 26 N 1.28759 * 108.37153 * 359.55581 * 25 18 17 27 27 H 0.97000 * 119.99955 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00173 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47516 * 59.99872 * 12 10 9 30 30 H 1.08996 * 109.47113 * 299.99690 * 12 10 9 31 31 H 0.97006 * 120.00141 * 359.97438 * 13 12 10 32 32 H 1.07999 * 126.57987 * 0.02562 * 17 16 14 33 33 H 1.09003 * 109.47572 * 5.00139 * 19 18 17 34 34 H 1.09004 * 109.47418 * 244.99448 * 19 18 17 35 35 H 1.08001 * 122.54115 * 0.02562 * 21 20 19 36 36 H 1.08004 * 122.54250 * 180.19862 * 22 21 20 37 37 H 1.07997 * 125.20716 * 179.78972 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5607 -2.3705 0.0022 13 7 6.0491 -3.7517 0.0026 14 6 7.3741 -3.9980 0.0042 15 8 8.1643 -3.0738 0.0048 16 6 7.8659 -5.3889 0.0040 17 6 9.1769 -5.7722 0.0049 18 7 9.1897 -7.1203 0.0049 19 6 10.3740 -7.9825 0.0053 20 6 10.3002 -8.9371 1.1691 21 6 9.7325 -10.1437 1.1391 22 6 9.7886 -10.8445 2.3316 23 6 10.3938 -10.2032 3.3324 24 16 10.9426 -8.6272 2.7769 25 7 7.8514 -7.5384 -0.0022 26 7 7.0996 -6.4931 0.0034 27 1 -0.4850 0.8401 -0.0004 28 1 3.8649 -0.3633 0.0007 29 1 5.9234 -1.8570 0.8927 30 1 5.9247 -1.8563 -0.8872 31 1 5.4187 -4.4891 0.0025 32 1 10.0381 -5.1205 0.0063 33 1 11.2703 -7.3687 0.0951 34 1 10.4124 -8.5476 -0.9261 35 1 9.2669 -10.5447 0.2510 36 1 9.3705 -11.8339 2.4442 37 1 10.5269 -10.5923 4.3310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324391137.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:49 Heat of formation + Delta-G solvation = 71.357623 kcal Electronic energy + Delta-G solvation = -24305.264805 eV Core-core repulsion = 20405.284803 eV Total energy + Delta-G solvation = -3899.980002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36130 -39.43734 -38.47947 -38.16039 -35.25055 -34.50056 -33.71576 -31.76756 -31.50083 -30.72843 -28.02940 -27.07816 -24.63109 -24.01655 -23.09261 -22.27179 -20.39461 -19.86534 -19.62896 -18.87251 -18.20107 -17.50393 -16.55922 -16.41196 -15.95209 -15.77311 -15.33251 -15.16521 -14.85948 -14.72864 -14.26179 -13.99513 -13.76496 -13.48837 -13.30849 -13.11151 -13.02823 -12.51142 -12.43128 -12.19534 -12.13197 -12.07210 -11.39532 -11.32358 -11.20722 -10.66149 -10.61326 -10.12898 -10.01650 -9.65810 -9.49534 -9.33820 -8.97386 -8.86069 -8.72420 -8.26312 -6.36590 -3.88984 0.28672 0.92373 1.07975 1.43104 1.66751 1.76544 2.35041 3.02302 3.06712 3.14272 3.22424 3.33540 3.61329 3.82414 4.01510 4.06938 4.10577 4.53442 4.57156 4.58366 4.63377 4.82899 4.97817 5.04087 5.12626 5.17789 5.54502 5.59528 5.71875 5.74536 5.80753 5.82871 5.92338 6.05590 6.54390 7.47596 7.62501 7.90618 8.04569 8.30619 8.49972 8.86282 9.33976 9.68116 10.75665 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.001916 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.380105 B =14608.334549 C =14934.094043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.577 5.577 10 C 0.438 3.562 11 O -0.573 6.573 12 C 0.106 3.894 13 N -0.690 5.690 14 C 0.603 3.397 15 O -0.549 6.549 16 C -0.094 4.094 17 C 0.091 3.909 18 N -0.365 5.365 19 C 0.201 3.799 20 C -0.224 4.224 21 C -0.088 4.088 22 C -0.141 4.141 23 C -0.196 4.196 24 S 0.115 5.885 25 N -0.054 5.054 26 N -0.197 5.197 27 H 0.275 0.725 28 H 0.374 0.626 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.421 0.579 32 H 0.205 0.795 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.878 -17.363 2.698 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.215 5.215 10 C 0.224 3.776 11 O -0.457 6.457 12 C -0.021 4.021 13 N -0.344 5.344 14 C 0.386 3.614 15 O -0.427 6.427 16 C -0.233 4.233 17 C -0.065 4.065 18 N -0.150 5.150 19 C 0.078 3.922 20 C -0.341 4.341 21 C -0.120 4.120 22 C -0.171 4.171 23 C -0.333 4.333 24 S 0.379 5.621 25 N -0.034 5.034 26 N -0.071 5.071 27 H 0.086 0.914 28 H 0.207 0.793 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.260 0.740 32 H 0.222 0.778 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 27.629 -17.273 3.382 32.759 hybrid contribution 0.246 0.588 -0.496 0.808 sum 27.875 -16.685 2.886 32.615 Atomic orbital electron populations 1.69622 1.05697 1.27738 1.48363 1.25067 0.95538 0.98145 0.97246 0.86667 0.79907 0.83793 0.79089 1.19426 1.20043 1.19219 1.19450 0.78958 0.96818 1.48481 0.86049 1.42107 1.07681 1.06065 1.65678 1.19622 0.88012 0.84948 0.85062 1.90572 1.69092 1.30832 1.55189 1.21036 0.94012 0.83511 1.03586 1.45502 1.06666 1.09702 1.72495 1.16682 0.82504 0.85411 0.76760 1.90786 1.55718 1.44080 1.52108 1.21440 0.90366 0.94500 1.16960 1.23352 1.00211 0.84763 0.98159 1.50614 1.08771 1.05278 1.50348 1.20233 0.84039 0.91005 0.96891 1.24251 1.11127 1.00110 0.98652 1.20245 0.98516 0.93497 0.99743 1.20239 1.02360 1.02160 0.92329 1.25775 1.05904 0.97727 1.03851 1.84395 1.57258 1.17019 1.03431 1.82042 0.82375 1.17145 1.21866 1.74751 1.26532 0.96393 1.09432 0.91435 0.79269 0.89387 0.89358 0.73959 0.77812 0.86665 0.86477 0.83628 0.83726 0.81495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.96 55.50 0.77 -24.50 16 2 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 7 C -0.31 -8.63 10.16 -14.94 -0.15 -8.78 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 9 N -0.58 -13.62 5.09 -10.96 -0.06 -13.67 16 10 C 0.44 9.89 7.85 -10.99 -0.09 9.80 16 11 O -0.57 -15.08 15.24 5.55 0.08 -14.99 16 12 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 13 N -0.69 -12.04 5.52 -62.53 -0.35 -12.39 16 14 C 0.60 9.71 7.82 -12.48 -0.10 9.61 16 15 O -0.55 -9.50 16.86 5.29 0.09 -9.41 16 16 C -0.09 -1.31 6.99 -83.55 -0.58 -1.89 16 17 C 0.09 0.91 11.27 -16.83 -0.19 0.72 16 18 N -0.36 -3.39 3.68 -62.24 -0.23 -3.62 16 19 C 0.20 1.04 7.03 -5.19 -0.04 1.00 16 20 C -0.22 -1.48 5.97 -36.00 -0.21 -1.70 16 21 C -0.09 -0.59 10.05 -41.21 -0.41 -1.00 16 22 C -0.14 -0.89 10.18 -41.21 -0.42 -1.31 16 23 C -0.20 -1.21 11.23 29.04 0.33 -0.88 16 24 S 0.11 0.76 23.33 -107.50 -2.51 -1.75 16 25 N -0.05 -0.71 13.64 60.35 0.82 0.12 16 26 N -0.20 -3.00 12.04 32.85 0.40 -2.60 16 27 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.42 7.81 7.12 -40.82 -0.29 7.52 16 32 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 0.26 8.08 -51.93 -0.42 -0.16 16 34 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 37 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -35.55 351.35 -5.85 -41.40 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -3.46 Total: 13.16 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -2.00 Total: 8.52 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 1.36 Total: -56.67 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.17 Total: -24.40 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.55 -5.85 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324391137.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.759 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds