Wall clock time and date at job start Tue Mar 31 2020 19:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48500 * 109.47494 * 270.00122 * 3 2 1 5 5 H 1.48504 * 109.46800 * 29.99895 * 3 2 1 6 6 H 1.48499 * 109.47588 * 149.99670 * 3 2 1 7 7 C 1.38948 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99709 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00325 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00013 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00231 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99905 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47132 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00203 * 180.02562 * 13 12 10 15 15 O 1.21591 * 119.99933 * 359.97438 * 14 13 12 16 16 C 1.47524 * 120.00088 * 180.02562 * 14 13 12 17 17 C 1.36596 * 125.76953 * 179.97438 * 16 14 13 18 18 N 1.34817 * 106.83970 * 179.97438 * 17 16 14 19 19 C 1.46496 * 126.59332 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.46989 * 125.00198 * 19 18 17 21 21 C 1.33380 * 125.20446 * 89.71456 * 20 19 18 22 22 C 1.38424 * 114.91979 * 179.85799 * 21 20 19 23 23 C 1.33387 * 114.92317 * 0.43559 * 22 21 20 24 24 S 1.75886 * 109.59281 * 359.76596 * 23 22 21 25 25 N 1.40206 * 106.80733 * 0.25995 * 18 17 16 26 26 N 1.28759 * 108.37153 * 359.55581 * 25 18 17 27 27 H 0.97000 * 119.99955 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00173 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47516 * 59.99872 * 12 10 9 30 30 H 1.08996 * 109.47113 * 299.99690 * 12 10 9 31 31 H 0.97006 * 120.00141 * 359.97438 * 13 12 10 32 32 H 1.07999 * 126.57987 * 0.02562 * 17 16 14 33 33 H 1.09003 * 109.47572 * 5.00139 * 19 18 17 34 34 H 1.09004 * 109.47418 * 244.99448 * 19 18 17 35 35 H 1.08001 * 122.54115 * 0.02562 * 21 20 19 36 36 H 1.08004 * 122.54250 * 180.19862 * 22 21 20 37 37 H 1.07997 * 125.20716 * 179.78972 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5607 -2.3705 0.0022 13 7 6.0491 -3.7517 0.0026 14 6 7.3741 -3.9980 0.0042 15 8 8.1643 -3.0738 0.0048 16 6 7.8659 -5.3889 0.0040 17 6 9.1769 -5.7722 0.0049 18 7 9.1897 -7.1203 0.0049 19 6 10.3740 -7.9825 0.0053 20 6 10.3002 -8.9371 1.1691 21 6 9.7325 -10.1437 1.1391 22 6 9.7886 -10.8445 2.3316 23 6 10.3938 -10.2032 3.3324 24 16 10.9426 -8.6272 2.7769 25 7 7.8514 -7.5384 -0.0022 26 7 7.0996 -6.4931 0.0034 27 1 -0.4850 0.8401 -0.0004 28 1 3.8649 -0.3633 0.0007 29 1 5.9234 -1.8570 0.8927 30 1 5.9247 -1.8563 -0.8872 31 1 5.4187 -4.4891 0.0025 32 1 10.0381 -5.1205 0.0063 33 1 11.2703 -7.3687 0.0951 34 1 10.4124 -8.5476 -0.9261 35 1 9.2669 -10.5447 0.2510 36 1 9.3705 -11.8339 2.4442 37 1 10.5269 -10.5923 4.3310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324391137.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:49 Heat of formation + Delta-G solvation = 43.035719 kcal Electronic energy + Delta-G solvation = -24306.492935 eV Core-core repulsion = 20405.284803 eV Total energy + Delta-G solvation = -3901.208132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.25140 -40.89719 -39.85244 -38.92771 -36.30433 -35.94867 -35.29912 -33.82793 -32.30633 -31.53366 -29.45267 -27.71852 -26.41734 -24.60270 -24.25268 -23.00995 -21.52015 -21.45281 -20.58617 -20.33811 -19.45177 -18.11786 -17.69214 -17.38453 -17.15284 -16.86347 -16.68558 -16.53843 -16.23693 -15.67168 -15.49375 -15.35823 -14.86613 -14.54698 -14.29173 -14.12642 -13.99563 -13.80706 -13.60612 -13.55274 -13.19804 -12.94950 -12.81759 -12.43245 -12.22870 -11.98346 -11.84093 -11.56909 -11.40777 -11.35536 -10.65594 -10.46547 -10.31963 -10.12467 -9.83497 -9.45485 -8.44110 -6.06532 -0.21703 0.15012 0.59025 0.61347 0.96085 1.13682 1.32612 1.35797 1.45977 1.80286 1.83606 1.98153 2.20585 2.22448 2.85843 3.11809 3.16986 3.29931 3.62039 3.77631 3.94160 4.03024 4.17233 4.27787 4.33697 4.39653 4.43381 4.56265 4.64080 4.72148 5.10734 5.18714 5.26499 5.38644 5.46813 5.49730 5.89195 6.35378 6.50179 6.79613 6.87213 7.05684 7.30031 7.80450 8.72529 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.001916 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.380105 B =14608.334549 C =14934.094043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.011 4.011 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.230 1.230 7 C -0.332 4.332 8 H 0.060 0.940 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.616 6.616 12 C 0.118 3.882 13 N -0.703 5.703 14 C 0.609 3.391 15 O -0.560 6.560 16 C -0.126 4.126 17 C 0.119 3.881 18 N -0.349 5.349 19 C 0.190 3.810 20 C -0.230 4.230 21 C -0.099 4.099 22 C -0.153 4.153 23 C -0.202 4.202 24 S 0.103 5.897 25 N -0.076 5.076 26 N -0.233 5.233 27 H 0.281 0.719 28 H 0.393 0.607 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.414 0.586 32 H 0.246 0.754 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.885 -16.097 2.660 35.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.210 4.210 3 Si 0.782 3.218 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.153 1.153 7 C -0.461 4.461 8 H 0.078 0.922 9 N -0.216 5.216 10 C 0.230 3.770 11 O -0.502 6.502 12 C -0.009 4.009 13 N -0.355 5.355 14 C 0.394 3.606 15 O -0.439 6.439 16 C -0.265 4.265 17 C -0.038 4.038 18 N -0.133 5.133 19 C 0.070 3.930 20 C -0.348 4.348 21 C -0.132 4.132 22 C -0.183 4.183 23 C -0.338 4.338 24 S 0.367 5.633 25 N -0.056 5.056 26 N -0.107 5.107 27 H 0.091 0.909 28 H 0.229 0.771 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.251 0.749 32 H 0.262 0.738 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 31.680 -16.047 3.347 35.670 hybrid contribution -0.954 -0.030 -0.466 1.062 sum 30.726 -16.077 2.880 34.797 Atomic orbital electron populations 1.69793 1.08122 1.29478 1.49294 1.26127 0.96487 1.02767 0.95666 0.85401 0.79608 0.76677 0.80137 1.17965 1.19869 1.15304 1.19022 0.81042 0.95230 1.50820 0.92175 1.41887 1.06063 1.07361 1.66317 1.20572 0.90225 0.83868 0.82382 1.90559 1.70833 1.32530 1.56275 1.20993 0.89485 0.84483 1.05908 1.45601 1.07306 1.09180 1.73426 1.16855 0.81640 0.86315 0.75780 1.90767 1.55641 1.44711 1.52790 1.21372 0.91927 0.93344 1.19867 1.23891 0.99776 0.85157 0.95026 1.50893 1.08599 1.05638 1.48198 1.20811 0.83484 0.91330 0.97379 1.24430 1.11128 1.00329 0.98927 1.20479 0.98583 0.93915 1.00205 1.20493 1.02513 1.02927 0.92351 1.26064 1.05584 0.97482 1.04685 1.84383 1.57482 1.17551 1.03856 1.81952 0.84112 1.16876 1.22700 1.74732 1.28050 0.97204 1.10683 0.90926 0.77051 0.86965 0.86777 0.74852 0.73840 0.82914 0.84202 0.83068 0.82431 0.79870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.96 21.66 0.30 -55.03 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 0.96 38.33 27.74 68.60 1.90 40.23 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 7 C -0.33 -19.27 10.16 84.04 0.85 -18.42 16 8 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 9 N -0.58 -27.01 5.09 -306.99 -1.56 -28.57 16 10 C 0.44 20.04 7.85 87.66 0.69 20.73 16 11 O -0.62 -33.77 15.24 -3.07 -0.05 -33.81 16 12 C 0.12 3.97 6.15 85.63 0.53 4.50 16 13 N -0.70 -24.04 5.52 -470.02 -2.60 -26.64 16 14 C 0.61 18.69 7.82 86.69 0.68 19.37 16 15 O -0.56 -17.88 16.86 -4.00 -0.07 -17.95 16 16 C -0.13 -3.34 6.99 40.82 0.29 -3.06 16 17 C 0.12 2.01 11.27 83.85 0.95 2.96 16 18 N -0.35 -5.60 3.68 -350.82 -1.29 -6.89 16 19 C 0.19 1.35 7.03 85.64 0.60 1.95 16 20 C -0.23 -2.59 5.97 24.59 0.15 -2.44 16 21 C -0.10 -1.21 10.05 21.21 0.21 -0.99 16 22 C -0.15 -1.76 10.18 21.22 0.22 -1.55 16 23 C -0.20 -2.24 11.23 66.72 0.75 -1.49 16 24 S 0.10 1.20 23.33 -56.49 -1.32 -0.12 16 25 N -0.08 -1.94 13.64 37.02 0.50 -1.43 16 26 N -0.23 -7.08 12.04 -49.99 -0.60 -7.68 16 27 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.39 15.22 5.76 -92.71 -0.53 14.69 16 29 H 0.11 3.28 8.14 -2.39 -0.02 3.27 16 30 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.41 15.69 7.12 -92.70 -0.66 15.03 16 32 H 0.25 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.15 -0.02 8.08 -2.39 -0.02 -0.04 16 34 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -82.88 351.35 1.50 -81.37 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.10 Total: 35.07 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.37 Total: 21.44 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -5.24 Total: -126.23 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.11 Total: -51.76 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -1.32 Total: -0.12 kcal Total: -82.88 1.50 -81.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324391137.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.410 kcal (2) G-P(sol) polarization free energy of solvation -82.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds