Wall clock time and date at job start Tue Mar 31 2020 19:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28962 * 124.83614 * 2 1 4 4 C 1.31790 * 117.20935 * 180.02562 * 3 2 1 5 5 C 1.34512 * 114.28361 * 0.02562 * 4 3 2 6 6 N 1.39431 * 126.07869 * 179.97438 * 5 4 3 7 7 C 1.34768 * 120.00586 * 179.97438 * 6 5 4 8 8 O 1.21433 * 120.00027 * 0.02562 * 7 6 5 9 9 C 1.49155 * 120.00595 * 179.97438 * 7 6 5 10 10 O 1.21407 * 119.99872 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00645 * 179.97438 * 9 7 6 12 12 C 1.39933 * 120.00102 * 180.02562 * 11 9 7 13 13 C 1.40452 * 125.98310 * 359.97438 * 12 11 9 14 14 C 1.35220 * 107.86988 * 179.97438 * 13 12 11 15 15 N 1.34993 * 107.87218 * 0.02562 * 14 13 12 16 16 C 1.46498 * 125.96688 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47005 * 125.00640 * 16 15 14 18 18 H 1.08005 * 119.99843 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00301 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99807 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00434 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47020 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47676 * 119.99285 * 21 19 17 24 24 H 1.48498 * 109.47451 * 239.99655 * 21 19 17 25 25 N 1.31274 * 125.97818 * 179.97438 * 12 11 9 26 26 S 1.70954 * 124.83418 * 180.31156 * 2 1 3 27 27 H 1.09000 * 109.46813 * 89.97331 * 1 2 3 28 28 H 1.08994 * 109.47028 * 209.97293 * 1 2 3 29 29 H 1.09001 * 109.47000 * 329.97239 * 1 2 3 30 30 H 1.08003 * 122.85752 * 179.97438 * 4 3 2 31 31 H 0.97008 * 119.99489 * 359.97438 * 6 5 4 32 32 H 0.97005 * 119.99332 * 0.02562 * 11 9 7 33 33 H 1.07998 * 126.06620 * 0.02562 * 13 12 11 34 34 H 1.07999 * 126.06257 * 179.97438 * 14 13 12 35 35 H 1.09001 * 109.46909 * 244.99884 * 16 15 14 36 36 H 1.08996 * 109.47340 * 5.00335 * 16 15 14 37 37 H 0.97005 * 120.00427 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2437 1.0585 0.0000 4 6 3.5500 0.8836 -0.0005 5 6 3.9355 -0.4051 -0.0015 6 7 5.2505 -0.8687 -0.0028 7 6 5.4980 -2.1935 -0.0032 8 8 4.5758 -2.9835 -0.0030 9 6 6.9047 -2.6894 -0.0051 10 8 7.8268 -1.8997 -0.0058 11 7 7.1523 -4.0143 -0.0050 12 6 8.4720 -4.4795 -0.0062 13 6 9.6281 -3.6819 -0.0081 14 6 10.7005 -4.5057 -0.0083 15 7 10.2464 -5.7769 -0.0071 16 6 11.0735 -6.9860 -0.0062 17 6 10.6847 -7.8598 1.1584 18 1 9.9002 -7.5456 1.8309 19 6 11.3311 -9.0598 1.3660 20 7 12.2867 -9.4421 0.5474 21 14 10.8496 -10.1425 2.8100 22 1 9.7561 -9.4907 3.5745 23 1 10.3852 -11.4605 2.3074 24 1 12.0250 -10.3370 3.6965 25 7 8.8462 -5.7378 -0.0058 26 16 2.4835 -1.4032 -0.0076 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 4.2512 1.7050 -0.0010 31 1 5.9872 -0.2376 -0.0033 32 1 6.4155 -4.6453 -0.0040 33 1 9.6558 -2.6023 -0.0085 34 1 11.7365 -4.2006 -0.0099 35 1 10.9199 -7.5319 -0.9371 36 1 12.1236 -6.7079 0.0829 37 1 12.7413 -10.2865 0.6932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325903165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:34 Heat of formation + Delta-G solvation = 70.064710 kcal Electronic energy + Delta-G solvation = -24414.437461 eV Core-core repulsion = 20514.401394 eV Total energy + Delta-G solvation = -3900.036067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50068 -40.59065 -39.88911 -38.83631 -36.09562 -34.89943 -33.44700 -31.96429 -31.15372 -29.53401 -28.47387 -27.03095 -25.46286 -24.17022 -23.02227 -21.83815 -21.06537 -20.49257 -19.85088 -18.75030 -18.09445 -17.16278 -16.70951 -16.58111 -16.53572 -16.49900 -15.42696 -15.34092 -14.85448 -14.67701 -14.57129 -14.26619 -13.89438 -13.70841 -13.12597 -13.09407 -12.80085 -12.52562 -12.38879 -12.13745 -11.91000 -11.67880 -11.61768 -11.15045 -10.92763 -10.67289 -10.33806 -10.26032 -9.95206 -9.74349 -9.60032 -9.42392 -8.70464 -8.56729 -8.35308 -7.70526 -6.31151 -4.36554 0.15379 0.70658 0.98149 1.34057 1.76759 2.33528 2.58406 2.83003 2.91904 3.18689 3.26636 3.32823 3.49975 3.60235 3.91800 4.10384 4.27641 4.64185 4.80211 5.04365 5.06432 5.10856 5.24441 5.30500 5.50679 5.57535 5.83865 5.94398 6.07490 6.27439 6.40396 6.70965 6.93455 6.99777 7.07846 7.29116 7.41451 7.60855 7.68042 7.79536 7.88190 8.42412 8.71825 9.29727 10.77723 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.024767 B = 0.002023 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.273288 B =13839.869213 C =14700.969262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.013 4.013 3 N -0.456 5.456 4 C 0.001 3.999 5 C -0.016 4.016 6 N -0.598 5.598 7 C 0.508 3.492 8 O -0.484 6.484 9 C 0.522 3.478 10 O -0.492 6.492 11 N -0.592 5.592 12 C 0.247 3.753 13 C -0.285 4.285 14 C 0.055 3.945 15 N -0.312 5.312 16 C 0.256 3.744 17 C -0.531 4.531 18 H 0.070 0.930 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.281 1.281 25 N -0.291 5.291 26 S 0.243 5.757 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.178 0.822 31 H 0.434 0.566 32 H 0.425 0.575 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.552 18.970 -2.265 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.290 4.290 3 N -0.170 5.170 4 C -0.155 4.155 5 C -0.234 4.234 6 N -0.245 5.245 7 C 0.289 3.711 8 O -0.357 6.357 9 C 0.301 3.699 10 O -0.365 6.365 11 N -0.240 5.240 12 C -0.005 4.005 13 C -0.316 4.316 14 C -0.095 4.095 15 N -0.094 5.094 16 C 0.139 3.861 17 C -0.569 4.569 18 H 0.088 0.912 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.207 1.207 25 N -0.122 5.122 26 S 0.495 5.505 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.195 0.805 31 H 0.274 0.726 32 H 0.262 0.738 33 H 0.179 0.821 34 H 0.189 0.811 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.155 16.899 -2.311 24.910 hybrid contribution 0.964 0.908 0.732 1.513 sum -17.191 17.807 -1.579 24.802 Atomic orbital electron populations 1.20371 0.85214 1.04054 1.03738 1.27327 1.02404 0.93278 1.05952 1.66274 1.03656 1.31884 1.15216 1.21634 0.91934 0.93886 1.08051 1.23771 0.90104 0.97130 1.12349 1.42303 1.05446 1.07599 1.69179 1.20291 0.90420 0.82560 0.77865 1.90773 1.45035 1.54016 1.45915 1.19198 0.88189 0.82971 0.79535 1.90759 1.44273 1.54802 1.46645 1.41873 1.06631 1.06502 1.68980 1.18946 0.83959 0.92448 1.05159 1.21504 0.88973 1.01158 1.19982 1.22603 1.00108 0.84762 1.02024 1.49206 1.02323 1.07108 1.50730 1.19838 0.88279 0.78461 0.99546 1.21274 1.20645 1.03909 1.11081 0.91185 1.24945 0.94614 0.97411 0.97078 1.69921 1.23462 1.22714 1.37102 0.86261 0.78536 0.80024 0.81632 1.19535 1.20625 1.20730 1.77416 0.92653 1.15393 1.26734 1.84939 0.92145 1.06149 1.67272 0.89772 0.90185 0.89490 0.80514 0.72577 0.73751 0.82115 0.81092 0.93452 0.92269 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.46 36.01 0.38 -0.02 16 2 C -0.01 -0.11 7.38 -13.48 -0.10 -0.21 16 3 N -0.46 -4.69 10.54 -11.68 -0.12 -4.81 16 4 C 0.00 0.00 11.39 -18.89 -0.22 -0.21 16 5 C -0.02 -0.15 7.25 -15.41 -0.11 -0.26 16 6 N -0.60 -5.41 5.41 -11.13 -0.06 -5.47 16 7 C 0.51 5.68 7.84 -11.73 -0.09 5.58 16 8 O -0.48 -6.02 14.09 5.42 0.08 -5.95 16 9 C 0.52 6.83 7.85 -11.72 -0.09 6.73 16 10 O -0.49 -6.97 13.60 5.45 0.07 -6.89 16 11 N -0.59 -8.81 5.43 -11.64 -0.06 -8.88 16 12 C 0.25 4.64 8.10 -154.55 -1.25 3.38 16 13 C -0.29 -5.11 9.60 -39.82 -0.38 -5.49 16 14 C 0.06 1.01 11.43 -17.24 -0.20 0.82 16 15 N -0.31 -6.85 3.67 -62.56 -0.23 -7.08 16 16 C 0.26 6.24 6.26 -5.20 -0.03 6.20 16 17 C -0.53 -14.34 9.23 -34.44 -0.32 -14.66 16 18 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -24.71 13.29 55.43 0.74 -23.98 16 21 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 N -0.29 -6.38 12.42 31.41 0.39 -5.99 16 26 S 0.24 2.29 20.41 -107.50 -2.19 0.09 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.18 1.14 8.06 -52.48 -0.42 0.71 16 31 H 0.43 3.00 8.29 -40.82 -0.34 2.67 16 32 H 0.42 5.68 8.29 -40.82 -0.34 5.35 16 33 H 0.16 2.67 5.91 -52.49 -0.31 2.36 16 34 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -32.02 347.34 -7.18 -39.20 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.49 Total: 5.12 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.51 Total: 3.45 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.65 Total: -56.20 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.15 Total: -12.84 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.19 Total: 0.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.02 -7.18 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325903165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.267 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds