Wall clock time and date at job start Tue Mar 31 2020 19:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39670 * 120.15961 * 201.66762 * 3 2 1 5 5 C 1.37902 * 119.85540 * 179.70650 * 4 3 2 6 6 C 1.38411 * 120.18701 * 0.54853 * 5 4 3 7 7 C 1.50698 * 119.83897 * 179.72355 * 6 5 4 8 8 N 1.46500 * 109.47467 * 269.72754 * 7 6 5 9 9 C 1.34773 * 120.00432 * 179.97438 * 8 7 6 10 10 O 1.21353 * 120.00047 * 0.02562 * 9 8 7 11 11 C 1.49454 * 120.00135 * 179.72278 * 9 8 7 12 12 O 1.21343 * 119.99752 * 0.28157 * 11 9 8 13 13 N 1.34777 * 120.00164 * 180.27489 * 11 9 8 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46671 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.46681 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00300 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00286 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99512 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00237 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99865 * 20 18 16 24 24 C 1.38280 * 120.32832 * 359.44858 * 6 5 4 25 25 C 1.38133 * 120.13492 * 0.27609 * 24 6 5 26 26 Cl 1.73605 * 120.09348 * 180.02562 * 25 24 6 27 27 H 1.07999 * 120.07047 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.90427 * 180.26798 * 5 4 3 29 29 H 1.09000 * 109.47767 * 149.72462 * 7 6 5 30 30 H 1.09001 * 109.46874 * 29.72515 * 7 6 5 31 31 H 0.97001 * 119.99454 * 0.02562 * 8 7 6 32 32 H 0.97000 * 119.99555 * 0.02562 * 13 11 9 33 33 H 1.08994 * 109.46952 * 300.00262 * 14 13 11 34 34 H 1.08992 * 109.46844 * 60.00609 * 14 13 11 35 35 H 1.08994 * 109.47336 * 299.99647 * 15 14 13 36 36 H 1.08992 * 109.47300 * 60.00508 * 15 14 13 37 37 H 0.96999 * 119.99804 * 180.02562 * 19 18 16 38 38 H 1.08002 * 119.93523 * 180.24879 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 1.1233 0.4459 5 6 4.6482 1.1148 0.4489 6 6 5.3383 0.0018 0.0009 7 6 6.8453 0.0034 0.0017 8 7 7.3339 0.5137 -1.2817 9 6 8.6590 0.6065 -1.5096 10 8 9.4474 0.2670 -0.6519 11 6 9.1573 1.1213 -2.8212 12 8 8.3689 1.4605 -3.6790 13 7 10.4825 1.2089 -3.0512 14 6 10.9710 1.7140 -4.3367 15 6 12.5010 1.7103 -4.3378 16 6 13.0035 2.2305 -5.6599 17 1 12.3019 2.5330 -6.4231 18 6 14.3591 2.3202 -5.8952 19 7 15.2136 1.9514 -4.9660 20 14 14.9820 2.9643 -7.5342 21 1 14.4896 4.3500 -7.7410 22 1 16.4671 2.9609 -7.5354 23 1 14.4847 2.0936 -8.6295 24 6 4.6519 -1.1138 -0.4422 25 6 3.2706 -1.1221 -0.4458 26 17 2.4099 -2.5235 -1.0016 27 1 2.7326 1.9944 0.7916 28 1 5.1912 1.9808 0.7976 29 1 7.2097 -1.0129 0.1511 30 1 7.2074 0.6414 0.8079 31 1 6.7036 0.7855 -1.9671 32 1 11.1126 0.9375 -2.3656 33 1 10.6058 1.0749 -5.1406 34 1 10.6097 2.7310 -4.4884 35 1 12.8665 2.3491 -3.5339 36 1 12.8620 0.6931 -4.1863 37 1 16.1673 2.0148 -5.1313 38 1 5.1968 -1.9803 -0.7867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327774298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:25 Heat of formation + Delta-G solvation = -31.623495 kcal Electronic energy + Delta-G solvation = -23747.884076 eV Core-core repulsion = 19809.102020 eV Total energy + Delta-G solvation = -3938.782056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78510 -40.17485 -38.39898 -37.29678 -37.07582 -35.64672 -34.86740 -32.91166 -32.27749 -31.65093 -29.86798 -27.90271 -25.53290 -23.80910 -23.63290 -22.53672 -21.08879 -20.34842 -19.78647 -18.60154 -16.95537 -16.89361 -16.56568 -16.32951 -15.85960 -15.54766 -15.22316 -14.89716 -14.79051 -14.68842 -14.48300 -14.42888 -13.59622 -13.56012 -13.50820 -13.30775 -13.19239 -12.74574 -12.49156 -12.34019 -12.16015 -12.10563 -11.62038 -11.57725 -11.27623 -11.07126 -10.70889 -10.42437 -9.92492 -9.76453 -9.58352 -9.53912 -9.44412 -9.23078 -8.74774 -8.44242 -6.12409 -4.16257 -0.18180 0.40329 1.33185 1.50809 2.07707 2.08150 2.57198 3.08119 3.14541 3.28968 3.33424 3.33457 3.36007 3.83124 3.84249 3.97029 4.37932 4.39570 4.43543 4.52105 4.68025 4.87675 5.05130 5.16220 5.22261 5.24492 5.36662 5.65217 5.83313 5.89818 6.13528 6.19811 6.53941 6.64754 6.87563 6.89722 7.41242 7.54522 7.56903 7.82567 7.84469 8.16478 8.28655 8.89040 9.48756 10.98934 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.025631 B = 0.001664 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.149933 B =16825.652492 C =17035.891522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.248 3.752 3 C -0.011 4.011 4 C -0.059 4.059 5 C -0.093 4.093 6 C -0.067 4.067 7 C 0.155 3.845 8 N -0.705 5.705 9 C 0.510 3.490 10 O -0.516 6.516 11 C 0.497 3.503 12 O -0.532 6.532 13 N -0.685 5.685 14 C 0.118 3.882 15 C 0.011 3.989 16 C -0.525 4.525 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.089 4.089 25 C 0.003 3.997 26 Cl -0.046 7.046 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.415 0.585 32 H 0.411 0.589 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.179 -5.283 14.492 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.068 4.068 3 C -0.015 4.015 4 C -0.079 4.079 5 C -0.112 4.112 6 C -0.068 4.068 7 C 0.032 3.968 8 N -0.360 5.360 9 C 0.292 3.708 10 O -0.391 6.391 11 C 0.276 3.724 12 O -0.410 6.410 13 N -0.336 5.336 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.564 4.564 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.108 4.108 25 C -0.027 4.027 26 Cl -0.017 7.017 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.252 0.748 32 H 0.246 0.754 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -24.776 -5.434 14.472 29.203 hybrid contribution 0.747 0.150 -0.893 1.174 sum -24.029 -5.283 13.579 28.102 Atomic orbital electron populations 1.81269 1.11706 1.06553 1.07344 1.25371 0.92380 0.94508 0.94572 1.15879 0.84886 0.95234 1.05538 1.21232 0.94178 0.96342 0.96179 1.21228 0.93486 0.98315 0.98123 1.20060 0.95615 0.93523 0.97643 1.20350 0.87891 1.01888 0.86628 1.45750 1.07044 1.65469 1.17753 1.20500 0.82814 0.78955 0.88570 1.90778 1.55147 1.47105 1.46047 1.19906 0.84312 0.80783 0.87351 1.90743 1.55298 1.48984 1.45980 1.46244 1.05650 1.61976 1.19709 1.21949 0.98510 0.98319 0.81529 1.19355 0.86631 0.98287 0.98389 1.20970 0.91812 1.43833 0.99738 0.92214 1.24997 0.96899 0.95233 0.97094 1.69945 1.02293 1.47301 1.33473 0.86555 0.77581 0.79527 0.83756 1.20107 1.21225 1.20111 1.21024 0.91177 0.99643 0.98935 1.20953 0.92633 0.88840 1.00264 1.98434 1.76577 1.39187 1.87456 0.83513 0.83540 0.89275 0.89122 0.74811 0.75351 0.91811 0.91805 0.95640 0.95638 0.92705 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.09 18.54 41.84 0.78 -3.31 16 2 C 0.25 1.99 14.38 -22.47 -0.32 1.67 16 3 C -0.01 -0.06 5.73 -106.88 -0.61 -0.68 16 4 C -0.06 -0.22 9.76 -39.17 -0.38 -0.60 16 5 C -0.09 -0.31 9.68 -39.64 -0.38 -0.69 16 6 C -0.07 -0.29 5.25 -104.54 -0.55 -0.84 16 7 C 0.16 0.90 5.79 -5.19 -0.03 0.87 16 8 N -0.71 -6.08 5.54 -61.91 -0.34 -6.42 16 9 C 0.51 6.43 7.89 -11.59 -0.09 6.34 16 10 O -0.52 -7.50 16.48 5.49 0.09 -7.41 16 11 C 0.50 7.72 7.89 -11.58 -0.09 7.63 16 12 O -0.53 -9.25 16.48 5.50 0.09 -9.15 16 13 N -0.69 -11.58 5.55 -60.73 -0.34 -11.92 16 14 C 0.12 2.36 5.61 -4.04 -0.02 2.33 16 15 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 16 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 20 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.09 -0.42 9.46 -39.60 -0.37 -0.80 16 25 C 0.00 0.02 6.35 -39.06 -0.25 -0.23 16 26 Cl -0.05 -0.33 28.03 -51.86 -1.45 -1.78 16 27 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 28 H 0.15 0.25 8.06 -52.48 -0.42 -0.17 16 29 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.42 3.31 7.94 -40.82 -0.32 2.99 16 32 H 0.41 6.59 7.94 -40.82 -0.32 6.27 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -32.27 367.05 -7.58 -39.85 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.99 Total: 1.32 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -3.66 Total: 2.26 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.83 Total: -46.49 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.18 Total: -16.56 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.45 Total: -1.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.27 -7.58 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327774298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.227 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds