Wall clock time and date at job start Tue Mar 31 2020 19:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39670 * 120.15961 * 201.66762 * 3 2 1 5 5 C 1.37902 * 119.85540 * 179.70650 * 4 3 2 6 6 C 1.38411 * 120.18701 * 0.54853 * 5 4 3 7 7 C 1.50698 * 119.83897 * 179.72355 * 6 5 4 8 8 N 1.46500 * 109.47467 * 269.72754 * 7 6 5 9 9 C 1.34773 * 120.00432 * 179.97438 * 8 7 6 10 10 O 1.21353 * 120.00047 * 0.02562 * 9 8 7 11 11 C 1.49454 * 120.00135 * 179.72278 * 9 8 7 12 12 O 1.21343 * 119.99752 * 0.28157 * 11 9 8 13 13 N 1.34777 * 120.00164 * 180.27489 * 11 9 8 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46671 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.46681 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00300 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00286 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99512 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00237 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99865 * 20 18 16 24 24 C 1.38280 * 120.32832 * 359.44858 * 6 5 4 25 25 C 1.38133 * 120.13492 * 0.27609 * 24 6 5 26 26 Cl 1.73605 * 120.09348 * 180.02562 * 25 24 6 27 27 H 1.07999 * 120.07047 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.90427 * 180.26798 * 5 4 3 29 29 H 1.09000 * 109.47767 * 149.72462 * 7 6 5 30 30 H 1.09001 * 109.46874 * 29.72515 * 7 6 5 31 31 H 0.97001 * 119.99454 * 0.02562 * 8 7 6 32 32 H 0.97000 * 119.99555 * 0.02562 * 13 11 9 33 33 H 1.08994 * 109.46952 * 300.00262 * 14 13 11 34 34 H 1.08992 * 109.46844 * 60.00609 * 14 13 11 35 35 H 1.08994 * 109.47336 * 299.99647 * 15 14 13 36 36 H 1.08992 * 109.47300 * 60.00508 * 15 14 13 37 37 H 0.96999 * 119.99804 * 180.02562 * 19 18 16 38 38 H 1.08002 * 119.93523 * 180.24879 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 1.1233 0.4459 5 6 4.6482 1.1148 0.4489 6 6 5.3383 0.0018 0.0009 7 6 6.8453 0.0034 0.0017 8 7 7.3339 0.5137 -1.2817 9 6 8.6590 0.6065 -1.5096 10 8 9.4474 0.2670 -0.6519 11 6 9.1573 1.1213 -2.8212 12 8 8.3689 1.4605 -3.6790 13 7 10.4825 1.2089 -3.0512 14 6 10.9710 1.7140 -4.3367 15 6 12.5010 1.7103 -4.3378 16 6 13.0035 2.2305 -5.6599 17 1 12.3019 2.5330 -6.4231 18 6 14.3591 2.3202 -5.8952 19 7 15.2136 1.9514 -4.9660 20 14 14.9820 2.9643 -7.5342 21 1 14.4896 4.3500 -7.7410 22 1 16.4671 2.9609 -7.5354 23 1 14.4847 2.0936 -8.6295 24 6 4.6519 -1.1138 -0.4422 25 6 3.2706 -1.1221 -0.4458 26 17 2.4099 -2.5235 -1.0016 27 1 2.7326 1.9944 0.7916 28 1 5.1912 1.9808 0.7976 29 1 7.2097 -1.0129 0.1511 30 1 7.2074 0.6414 0.8079 31 1 6.7036 0.7855 -1.9671 32 1 11.1126 0.9375 -2.3656 33 1 10.6058 1.0749 -5.1406 34 1 10.6097 2.7310 -4.4884 35 1 12.8665 2.3491 -3.5339 36 1 12.8620 0.6931 -4.1863 37 1 16.1673 2.0148 -5.1313 38 1 5.1968 -1.9803 -0.7867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327774298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:24 Heat of formation + Delta-G solvation = -53.365616 kcal Electronic energy + Delta-G solvation = -23748.826885 eV Core-core repulsion = 19809.102020 eV Total energy + Delta-G solvation = -3939.724865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70009 -40.80148 -39.53893 -37.87850 -37.65865 -36.87608 -35.97197 -34.77866 -32.86303 -32.01027 -31.64970 -28.62782 -27.10444 -25.01121 -23.99292 -23.29740 -22.70570 -21.44475 -20.22927 -19.73258 -18.54172 -17.80014 -17.40510 -17.15395 -16.92412 -16.49867 -16.46429 -15.97824 -15.77481 -15.58548 -15.42880 -14.99151 -14.76910 -14.63698 -14.27799 -14.14925 -14.09485 -13.89731 -13.56625 -13.23215 -12.95175 -12.90346 -12.79811 -12.57024 -12.52383 -12.48323 -12.23541 -12.05516 -11.65432 -11.42777 -10.72990 -10.58175 -10.32922 -10.14357 -10.12476 -9.90080 -8.20897 -6.31735 -0.61711 0.06866 0.38798 0.88405 1.32563 1.45608 1.47134 1.47227 1.55189 1.80244 2.18888 2.42108 2.56605 2.63731 2.86507 3.14156 3.40960 3.51956 3.63997 4.03369 4.08888 4.15632 4.43227 4.49653 4.52512 4.66461 4.78753 4.84952 4.85796 5.04648 5.10959 5.13779 5.30692 5.45952 5.53560 5.59037 5.78525 5.96679 6.16203 6.28393 6.40664 6.75334 6.82826 6.98984 7.37668 8.90658 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.025631 B = 0.001664 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.149933 B =16825.652492 C =17035.891522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.268 3.732 3 C -0.023 4.023 4 C -0.048 4.048 5 C -0.082 4.082 6 C -0.062 4.062 7 C 0.154 3.846 8 N -0.685 5.685 9 C 0.520 3.480 10 O -0.537 6.537 11 C 0.498 3.502 12 O -0.550 6.550 13 N -0.690 5.690 14 C 0.138 3.862 15 C 0.018 3.982 16 C -0.545 4.545 17 H 0.064 0.936 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.268 1.268 24 C -0.087 4.087 25 C -0.006 4.006 26 Cl -0.063 7.063 27 H 0.170 0.830 28 H 0.171 0.829 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.421 0.579 32 H 0.415 0.585 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.265 0.735 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.572 -4.485 14.790 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.047 4.047 3 C -0.027 4.027 4 C -0.068 4.068 5 C -0.100 4.100 6 C -0.064 4.064 7 C 0.032 3.968 8 N -0.338 5.338 9 C 0.300 3.700 10 O -0.414 6.414 11 C 0.279 3.721 12 O -0.429 6.429 13 N -0.341 5.341 14 C 0.015 3.985 15 C -0.020 4.020 16 C -0.584 4.584 17 H 0.083 0.917 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.106 4.106 25 C -0.035 4.035 26 Cl -0.034 7.034 27 H 0.187 0.813 28 H 0.189 0.811 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.258 0.742 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -25.226 -4.643 14.786 29.606 hybrid contribution 0.839 -0.096 -0.926 1.254 sum -24.387 -4.738 13.859 28.447 Atomic orbital electron populations 1.81281 1.13150 1.08174 1.09253 1.25711 0.92748 0.93082 0.93139 1.16024 0.83724 0.96200 1.06800 1.21486 0.94379 0.96097 0.94848 1.21499 0.93292 0.98515 0.96734 1.19941 0.94707 0.93778 0.97924 1.20552 0.88627 1.02389 0.85205 1.45722 1.05507 1.63684 1.18924 1.19810 0.83992 0.79306 0.86900 1.90786 1.55931 1.48537 1.46105 1.20418 0.83378 0.79836 0.88465 1.90730 1.55543 1.49561 1.47017 1.46069 1.06680 1.62554 1.18780 1.21449 0.95657 0.98325 0.83040 1.19180 0.89406 0.96552 0.96852 1.21434 0.92341 1.43696 1.00919 0.91746 1.25888 0.97223 0.95450 1.00730 1.70065 1.02575 1.48480 1.35502 0.85491 0.76942 0.79200 0.79357 1.19224 1.20942 1.19306 1.21106 0.90679 1.00206 0.98646 1.21001 0.92979 0.88418 1.01145 1.98430 1.77016 1.40229 1.87759 0.81299 0.81114 0.88729 0.87767 0.74178 0.74879 0.92136 0.92018 0.97302 0.97376 0.92625 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.25 18.54 19.00 0.35 -8.89 16 2 C 0.27 4.15 14.38 88.33 1.27 5.42 16 3 C -0.02 -0.23 5.73 -21.32 -0.12 -0.35 16 4 C -0.05 -0.20 9.76 22.54 0.22 0.02 16 5 C -0.08 -0.24 9.68 22.23 0.22 -0.02 16 6 C -0.06 -0.34 5.25 -19.81 -0.10 -0.45 16 7 C 0.15 1.28 5.79 85.63 0.50 1.78 16 8 N -0.68 -9.95 5.54 -468.14 -2.59 -12.54 16 9 C 0.52 12.12 7.89 87.27 0.69 12.80 16 10 O -0.54 -14.68 16.48 -3.26 -0.05 -14.73 16 11 C 0.50 14.90 7.89 87.27 0.69 15.59 16 12 O -0.55 -18.38 16.48 -3.23 -0.05 -18.43 16 13 N -0.69 -23.08 5.55 -464.43 -2.58 -25.65 16 14 C 0.14 5.50 5.61 86.38 0.48 5.98 16 15 C 0.02 0.86 5.09 29.85 0.15 1.01 16 16 C -0.55 -29.39 9.11 25.60 0.23 -29.16 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 18 C 0.01 0.33 5.46 84.66 0.46 0.79 16 19 N -0.93 -53.68 13.29 21.45 0.28 -53.39 16 20 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 C -0.09 -0.65 9.46 22.25 0.21 -0.44 16 25 C -0.01 -0.06 6.35 22.61 0.14 0.08 16 26 Cl -0.06 -0.88 28.03 -2.72 -0.08 -0.96 16 27 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 28 H 0.17 -0.25 8.06 -2.91 -0.02 -0.27 16 29 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 30 H 0.10 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.42 5.52 7.94 -92.71 -0.74 4.78 16 32 H 0.41 13.30 7.94 -92.71 -0.74 12.56 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -69.82 367.05 2.02 -67.80 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -0.33 Total: 9.19 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.04 Total: 13.05 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -4.53 Total: -100.48 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.11 Total: -33.16 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -69.82 2.02 -67.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327774298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.433 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds