Wall clock time and date at job start Tue Mar 31 2020 19:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 120.00092 * 2 1 4 4 H 1.48495 * 109.46867 * 269.99865 * 3 2 1 5 5 H 1.48498 * 109.46775 * 29.99951 * 3 2 1 6 6 H 1.48500 * 109.47069 * 149.99972 * 3 2 1 7 7 C 1.38808 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00220 * 189.08508 * 7 2 1 9 9 N 1.36939 * 120.00381 * 9.09235 * 7 2 1 10 10 C 1.46961 * 120.59378 * 222.97838 * 9 7 2 11 11 C 1.53371 * 108.63402 * 235.20079 * 10 9 7 12 12 N 1.46957 * 108.63517 * 310.57635 * 11 10 9 13 13 C 1.34780 * 120.59087 * 235.20575 * 12 11 10 14 14 O 1.21649 * 120.00531 * 7.04177 * 13 12 11 15 15 C 1.47073 * 119.99543 * 187.04293 * 13 12 11 16 16 N 1.31458 * 126.25873 * 7.32294 * 15 13 12 17 17 N 1.28667 * 109.37704 * 180.02562 * 16 15 13 18 18 C 1.32066 * 109.31898 * 359.97438 * 17 16 15 19 19 C 1.47330 * 126.28898 * 179.74241 * 18 17 16 20 20 C 1.35187 * 123.08705 * 0.02562 * 19 18 17 21 21 S 1.70966 * 108.78023 * 180.02562 * 20 19 18 22 22 C 1.70791 * 91.05262 * 0.02562 * 21 20 19 23 23 N 1.28764 * 110.47576 * 359.72870 * 22 21 20 24 24 O 1.34555 * 107.41234 * 0.02562 * 18 17 16 25 25 C 1.46967 * 118.81478 * 55.47832 * 12 11 10 26 26 C 1.46967 * 120.59387 * 42.95145 * 9 7 2 27 27 H 0.96996 * 119.99524 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.61179 * 115.45707 * 10 9 7 29 29 H 1.08999 * 109.75359 * 355.02963 * 10 9 7 30 30 H 1.09000 * 109.60841 * 190.83091 * 11 10 9 31 31 H 1.08993 * 109.61087 * 70.32222 * 11 10 9 32 32 H 1.07996 * 125.60829 * 0.02615 * 20 19 18 33 33 H 1.08002 * 124.76500 * 180.02562 * 22 21 20 34 34 H 1.08993 * 109.60636 * 64.26179 * 25 12 11 35 35 H 1.08997 * 109.60805 * 184.78255 * 25 12 11 36 36 H 1.09004 * 109.60754 * 244.54248 * 26 9 7 37 37 H 1.08998 * 109.60978 * 5.05050 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2081 0.1482 9 7 1.3385 -2.3807 -0.1863 10 6 1.6500 -3.5578 0.6365 11 6 1.9969 -4.7275 -0.2928 12 7 0.9511 -4.8377 -1.3194 13 6 0.2899 -5.9977 -1.5033 14 8 0.4638 -6.9253 -0.7357 15 6 -0.6420 -6.1420 -2.6319 16 7 -0.8226 -5.2782 -3.6063 17 7 -1.7131 -5.7301 -4.4177 18 6 -2.1369 -6.9058 -3.9908 19 6 -3.1578 -7.7509 -4.6342 20 6 -3.7942 -7.4007 -5.7743 21 16 -4.8961 -8.6393 -6.1923 22 6 -4.4420 -9.5496 -4.8205 23 7 -3.5347 -8.9301 -4.1489 24 8 -1.4694 -7.1868 -2.8568 25 6 0.6434 -3.6622 -2.1461 26 6 0.2926 -2.4909 -1.2130 27 1 -0.4849 0.8400 -0.0004 28 1 0.7840 -3.8184 1.2450 29 1 2.4996 -3.3404 1.2838 30 1 2.0425 -5.6516 0.2835 31 1 2.9595 -4.5430 -0.7695 32 1 -3.6331 -6.4886 -6.3296 33 1 -4.8542 -10.5122 -4.5561 34 1 1.5119 -3.4035 -2.7517 35 1 -0.2050 -3.8826 -2.7939 36 1 -0.6700 -2.6755 -0.7362 37 1 0.2469 -1.5669 -1.7893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339307474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:30 Heat of formation + Delta-G solvation = 109.733089 kcal Electronic energy + Delta-G solvation = -25818.661055 eV Core-core repulsion = 21920.345137 eV Total energy + Delta-G solvation = -3898.315917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.32775 -40.37541 -39.70932 -37.06297 -36.33870 -34.02384 -32.88896 -31.48563 -30.53223 -29.87361 -27.35356 -26.59796 -25.22626 -23.86903 -23.43993 -22.81182 -21.20462 -20.83823 -19.44818 -19.21226 -17.76647 -17.62856 -16.85171 -16.61296 -16.18069 -15.73896 -15.22844 -15.02739 -14.78014 -14.73273 -13.91113 -13.86368 -13.76674 -13.43587 -13.42552 -12.70143 -12.56913 -12.50699 -12.44640 -11.82348 -11.51308 -11.00624 -10.85433 -10.78800 -10.65952 -10.53594 -10.39577 -10.35138 -10.26356 -10.22687 -10.00349 -9.65128 -9.10265 -8.59009 -8.46518 -6.54084 -5.87343 -3.50134 -0.21020 0.55593 0.66482 0.96132 1.53042 1.72280 2.50173 2.88878 2.98262 3.32989 3.39877 3.40978 3.45066 3.89580 4.22654 4.42029 4.54359 4.76280 4.83365 4.93939 4.97627 5.28623 5.31315 5.39266 5.77106 5.80099 5.88939 6.05248 6.22272 6.34320 6.47752 6.74281 6.84229 6.92572 7.11745 7.31742 7.51485 7.75523 7.81908 8.07838 8.45342 9.11715 9.68323 10.34978 11.18758 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.002521 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.734602 B =11103.586691 C =12026.492976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.019 3.981 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.269 4.269 8 H 0.062 0.938 9 N -0.588 5.588 10 C 0.131 3.869 11 C 0.096 3.904 12 N -0.556 5.556 13 C 0.599 3.401 14 O -0.524 6.524 15 C 0.150 3.850 16 N -0.226 5.226 17 N -0.265 5.265 18 C 0.247 3.753 19 C 0.119 3.881 20 C -0.228 4.228 21 S 0.240 5.760 22 C 0.004 3.996 23 N -0.439 5.439 24 O -0.173 6.173 25 C 0.048 3.952 26 C 0.166 3.834 27 H 0.257 0.743 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.198 0.802 33 H 0.211 0.789 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.026 0.974 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 -17.413 -13.815 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.182 4.182 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.399 4.399 8 H 0.079 0.921 9 N -0.311 5.311 10 C 0.004 3.996 11 C -0.026 4.026 12 N -0.287 5.287 13 C 0.380 3.620 14 O -0.400 6.400 15 C -0.062 4.062 16 N -0.080 5.080 17 N -0.116 5.116 18 C 0.038 3.962 19 C -0.016 4.016 20 C -0.371 4.371 21 S 0.495 5.505 22 C -0.296 4.296 23 N -0.152 5.152 24 O -0.048 6.048 25 C -0.076 4.076 26 C 0.039 3.961 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.216 0.784 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.044 0.956 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.074 -17.158 -14.328 24.519 hybrid contribution 0.872 0.495 1.149 1.525 sum -9.202 -16.663 -13.179 23.152 Atomic orbital electron populations 1.69977 1.05539 1.25978 1.52036 1.25504 0.95353 0.98888 0.98469 0.86286 0.79248 0.83282 0.77846 1.21105 1.21587 1.20159 1.19040 0.90308 0.83273 1.47284 0.92067 1.43858 1.43009 1.08050 1.36169 1.21348 0.99141 0.87005 0.92061 1.22534 0.88718 1.01452 0.89918 1.47841 1.35647 1.09424 1.35819 1.15982 0.79978 0.84443 0.81557 1.90871 1.65009 1.39842 1.44264 1.27560 0.95722 0.83141 0.99757 1.74783 1.10673 1.21982 1.00554 1.75110 1.08525 1.06062 1.21921 1.24385 0.94714 0.93078 0.84032 1.16692 0.98515 0.92060 0.94293 1.26600 1.02227 1.07442 1.00878 1.83043 1.34440 1.07866 1.25202 1.28528 0.98795 1.05695 0.96532 1.66644 1.12380 1.05642 1.30566 1.85056 1.41568 1.41231 1.36944 1.23750 1.03215 0.85860 0.94809 1.21161 0.90941 0.94612 0.89387 0.93337 0.95590 0.90883 0.89452 0.90744 0.78446 0.77214 0.90911 0.86556 0.95570 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 11.85 55.49 0.66 -24.77 16 2 C 0.02 0.52 5.04 -17.43 -0.09 0.43 16 3 Si 0.90 21.03 29.56 -169.99 -5.03 16.00 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.27 -7.12 9.43 -15.06 -0.14 -7.26 16 8 H 0.06 1.59 7.84 -52.49 -0.41 1.18 16 9 N -0.59 -14.34 2.88 -171.77 -0.49 -14.84 16 10 C 0.13 2.73 6.67 -3.60 -0.02 2.71 16 11 C 0.10 1.73 6.60 -3.60 -0.02 1.71 16 12 N -0.56 -10.49 2.94 -173.62 -0.51 -11.00 16 13 C 0.60 11.45 7.67 -12.68 -0.10 11.35 16 14 O -0.52 -10.96 16.53 1.18 0.02 -10.94 16 15 C 0.15 2.68 7.90 -14.13 -0.11 2.57 16 16 N -0.23 -3.91 8.69 31.99 0.28 -3.63 16 17 N -0.26 -4.17 12.18 32.04 0.39 -3.78 16 18 C 0.25 3.72 8.22 -13.75 -0.11 3.60 16 19 C 0.12 1.40 6.69 -84.77 -0.57 0.83 16 20 C -0.23 -1.82 10.83 29.65 0.32 -1.50 16 21 S 0.24 1.06 22.97 -107.50 -2.47 -1.41 16 22 C 0.00 0.02 12.18 51.48 0.63 0.65 16 23 N -0.44 -4.93 10.65 -12.44 -0.13 -5.06 16 24 O -0.17 -3.02 10.91 -1.46 -0.02 -3.03 16 25 C 0.05 0.91 6.32 -3.37 -0.02 0.89 16 26 C 0.17 3.84 5.46 -3.37 -0.02 3.82 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.43 7.94 -51.93 -0.41 1.02 16 30 H 0.09 1.48 6.99 -51.93 -0.36 1.12 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.12 2.16 4.09 -81.06 -0.33 1.83 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 2.17 6.89 -51.93 -0.36 1.82 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -33.24 334.24 -6.07 -39.31 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.55 Total: -1.71 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: -0.26 Total: 19.80 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.19 Total: -63.07 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.00 Total: -13.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.47 Total: -1.41 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.24 -6.07 -39.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339307474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.045 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds