Wall clock time and date at job start Tue Mar 31 2020 19:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 120.00092 * 2 1 4 4 H 1.48495 * 109.46867 * 269.99865 * 3 2 1 5 5 H 1.48498 * 109.46775 * 29.99951 * 3 2 1 6 6 H 1.48500 * 109.47069 * 149.99972 * 3 2 1 7 7 C 1.38808 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00220 * 189.08508 * 7 2 1 9 9 N 1.36939 * 120.00381 * 9.09235 * 7 2 1 10 10 C 1.46961 * 120.59378 * 222.97838 * 9 7 2 11 11 C 1.53371 * 108.63402 * 235.20079 * 10 9 7 12 12 N 1.46957 * 108.63517 * 310.57635 * 11 10 9 13 13 C 1.34780 * 120.59087 * 235.20575 * 12 11 10 14 14 O 1.21649 * 120.00531 * 7.04177 * 13 12 11 15 15 C 1.47073 * 119.99543 * 187.04293 * 13 12 11 16 16 N 1.31458 * 126.25873 * 7.32294 * 15 13 12 17 17 N 1.28667 * 109.37704 * 180.02562 * 16 15 13 18 18 C 1.32066 * 109.31898 * 359.97438 * 17 16 15 19 19 C 1.47330 * 126.28898 * 179.74241 * 18 17 16 20 20 C 1.35187 * 123.08705 * 0.02562 * 19 18 17 21 21 S 1.70966 * 108.78023 * 180.02562 * 20 19 18 22 22 C 1.70791 * 91.05262 * 0.02562 * 21 20 19 23 23 N 1.28764 * 110.47576 * 359.72870 * 22 21 20 24 24 O 1.34555 * 107.41234 * 0.02562 * 18 17 16 25 25 C 1.46967 * 118.81478 * 55.47832 * 12 11 10 26 26 C 1.46967 * 120.59387 * 42.95145 * 9 7 2 27 27 H 0.96996 * 119.99524 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.61179 * 115.45707 * 10 9 7 29 29 H 1.08999 * 109.75359 * 355.02963 * 10 9 7 30 30 H 1.09000 * 109.60841 * 190.83091 * 11 10 9 31 31 H 1.08993 * 109.61087 * 70.32222 * 11 10 9 32 32 H 1.07996 * 125.60829 * 0.02615 * 20 19 18 33 33 H 1.08002 * 124.76500 * 180.02562 * 22 21 20 34 34 H 1.08993 * 109.60636 * 64.26179 * 25 12 11 35 35 H 1.08997 * 109.60805 * 184.78255 * 25 12 11 36 36 H 1.09004 * 109.60754 * 244.54248 * 26 9 7 37 37 H 1.08998 * 109.60978 * 5.05050 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2081 0.1482 9 7 1.3385 -2.3807 -0.1863 10 6 1.6500 -3.5578 0.6365 11 6 1.9969 -4.7275 -0.2928 12 7 0.9511 -4.8377 -1.3194 13 6 0.2899 -5.9977 -1.5033 14 8 0.4638 -6.9253 -0.7357 15 6 -0.6420 -6.1420 -2.6319 16 7 -0.8226 -5.2782 -3.6063 17 7 -1.7131 -5.7301 -4.4177 18 6 -2.1369 -6.9058 -3.9908 19 6 -3.1578 -7.7509 -4.6342 20 6 -3.7942 -7.4007 -5.7743 21 16 -4.8961 -8.6393 -6.1923 22 6 -4.4420 -9.5496 -4.8205 23 7 -3.5347 -8.9301 -4.1489 24 8 -1.4694 -7.1868 -2.8568 25 6 0.6434 -3.6622 -2.1461 26 6 0.2926 -2.4909 -1.2130 27 1 -0.4849 0.8400 -0.0004 28 1 0.7840 -3.8184 1.2450 29 1 2.4996 -3.3404 1.2838 30 1 2.0425 -5.6516 0.2835 31 1 2.9595 -4.5430 -0.7695 32 1 -3.6331 -6.4886 -6.3296 33 1 -4.8542 -10.5122 -4.5561 34 1 1.5119 -3.4035 -2.7517 35 1 -0.2050 -3.8826 -2.7939 36 1 -0.6700 -2.6755 -0.7362 37 1 0.2469 -1.5669 -1.7893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339307474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:29 Heat of formation + Delta-G solvation = 82.867451 kcal Electronic energy + Delta-G solvation = -25819.826036 eV Core-core repulsion = 21920.345137 eV Total energy + Delta-G solvation = -3899.480899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.58587 -41.33475 -40.95602 -38.69163 -37.70069 -35.77485 -34.08490 -33.13811 -32.09860 -31.05256 -28.99706 -27.46166 -26.66261 -25.25958 -24.86430 -24.38763 -22.80348 -21.73507 -20.97700 -19.91098 -19.34954 -18.95450 -18.18776 -17.97659 -17.35066 -17.10675 -16.65467 -16.49464 -15.80068 -15.74216 -15.56070 -15.36032 -15.27878 -15.13593 -14.42086 -14.21789 -14.08358 -13.90984 -13.33814 -13.14485 -13.00193 -12.76774 -12.63534 -12.56046 -12.25040 -12.09267 -11.90915 -11.82644 -11.73311 -11.34195 -10.94691 -10.82649 -10.59826 -10.12901 -9.82229 -8.52129 -7.89368 -5.57309 -1.15318 -0.35841 0.06366 0.31825 0.43986 0.67267 1.48679 1.50132 1.51267 1.59436 1.67397 1.77731 2.26422 2.49484 2.56973 3.26391 3.43063 3.51369 3.59205 3.67245 3.92023 3.98780 4.13688 4.19466 4.29663 4.34924 4.52888 4.59420 4.68611 4.70516 4.89756 5.05413 5.17691 5.34326 5.43532 5.66276 5.94967 6.33779 6.42836 6.43681 6.68955 7.11530 7.71732 8.35474 9.14007 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.002521 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.734602 B =11103.586691 C =12026.492976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.034 4.034 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.275 4.275 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.131 3.869 11 C 0.106 3.894 12 N -0.559 5.559 13 C 0.606 3.394 14 O -0.545 6.545 15 C 0.126 3.874 16 N -0.225 5.225 17 N -0.280 5.280 18 C 0.266 3.734 19 C 0.072 3.928 20 C -0.228 4.228 21 S 0.355 5.645 22 C -0.003 4.003 23 N -0.489 5.489 24 O -0.188 6.188 25 C 0.068 3.932 26 C 0.175 3.825 27 H 0.253 0.747 28 H 0.009 0.991 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.209 0.791 33 H 0.245 0.755 34 H 0.084 0.916 35 H 0.125 0.875 36 H -0.003 1.003 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 -18.854 -15.891 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.231 4.231 3 Si 0.798 3.202 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.405 4.405 8 H 0.085 0.915 9 N -0.329 5.329 10 C 0.005 3.995 11 C -0.016 4.016 12 N -0.291 5.291 13 C 0.389 3.611 14 O -0.423 6.423 15 C -0.085 4.085 16 N -0.079 5.079 17 N -0.131 5.131 18 C 0.058 3.942 19 C -0.063 4.063 20 C -0.373 4.373 21 S 0.612 5.388 22 C -0.301 4.301 23 N -0.203 5.203 24 O -0.064 6.064 25 C -0.056 4.056 26 C 0.048 3.952 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.226 0.774 33 H 0.261 0.739 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.015 0.985 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.714 -18.627 -16.425 27.047 hybrid contribution 0.829 0.764 1.625 1.978 sum -9.885 -17.863 -14.800 25.216 Atomic orbital electron populations 1.70134 1.07075 1.26354 1.53768 1.26264 0.96045 1.02156 0.98678 0.85244 0.78187 0.79023 0.77771 1.20732 1.22286 1.18955 1.19381 0.90791 0.84154 1.46166 0.91471 1.44109 1.42918 1.08672 1.37209 1.21429 0.98901 0.86772 0.92408 1.22458 0.89107 1.00574 0.89498 1.47846 1.35902 1.09291 1.36020 1.15981 0.79634 0.84050 0.81458 1.90845 1.65756 1.40462 1.45194 1.27138 0.97098 0.84095 1.00206 1.74628 1.10812 1.22043 1.00435 1.75059 1.09136 1.06854 1.22016 1.25225 0.93681 0.92815 0.82509 1.16767 1.00054 0.93247 0.96201 1.27026 1.01903 1.08968 0.99392 1.82736 1.30388 1.03942 1.21784 1.29154 0.97291 1.06707 0.96911 1.66611 1.14763 1.06128 1.32805 1.85046 1.41990 1.41294 1.38114 1.23458 1.04020 0.84399 0.93747 1.20912 0.89681 0.95123 0.89443 0.93831 0.97266 0.89637 0.88139 0.88852 0.77426 0.73882 0.89798 0.85791 0.98501 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.44 11.85 21.65 0.26 -54.18 16 2 C -0.03 -1.85 5.04 84.86 0.43 -1.42 16 3 Si 0.97 43.56 29.56 68.60 2.03 45.59 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.27 -14.60 9.43 84.03 0.79 -13.81 16 8 H 0.07 3.44 7.84 -2.91 -0.02 3.42 16 9 N -0.61 -29.99 2.88 -697.35 -2.01 -31.99 16 10 C 0.13 5.47 6.67 86.42 0.58 6.04 16 11 C 0.11 3.72 6.60 86.42 0.57 4.29 16 12 N -0.56 -21.18 2.94 -821.45 -2.42 -23.59 16 13 C 0.61 23.51 7.67 86.56 0.66 24.17 16 14 O -0.55 -23.06 16.53 -0.31 -0.01 -23.06 16 15 C 0.13 4.64 7.90 87.07 0.69 5.33 16 16 N -0.22 -7.90 8.69 -166.26 -1.44 -9.35 16 17 N -0.28 -8.91 12.18 -166.13 -2.02 -10.93 16 18 C 0.27 8.10 8.22 87.05 0.72 8.82 16 19 C 0.07 1.63 6.69 40.66 0.27 1.91 16 20 C -0.23 -3.14 10.83 67.12 0.73 -2.41 16 21 S 0.36 1.73 22.97 -56.49 -1.30 0.43 16 22 C 0.00 -0.03 12.18 130.69 1.59 1.57 16 23 N -0.49 -10.44 10.65 -193.29 -2.06 -12.50 16 24 O -0.19 -6.76 10.91 -9.75 -0.11 -6.87 16 25 C 0.07 2.63 6.32 86.56 0.55 3.17 16 26 C 0.18 8.40 5.46 86.56 0.47 8.87 16 27 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 3.31 7.94 -2.39 -0.02 3.29 16 30 H 0.10 3.32 6.99 -2.39 -0.02 3.30 16 31 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.21 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.25 0.29 8.06 -2.91 -0.02 0.27 16 34 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.13 4.70 4.09 -40.07 -0.16 4.53 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.06 3.25 6.89 -2.39 -0.02 3.23 16 Total: -1.00 -74.85 334.24 -0.04 -74.89 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 0.99 Total: 5.04 kcal Atomic # 6 Polarization: 38.49 SS G_CDS: 8.04 Total: 46.53 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -9.69 Total: -142.55 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.11 Total: -29.93 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.30 Total: 0.43 kcal Total: -74.85 -0.04 -74.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339307474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.756 kcal (2) G-P(sol) polarization free energy of solvation -74.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds