Wall clock time and date at job start Tue Mar 31 2020 19:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48497 * 109.47310 * 240.00472 * 3 2 1 5 5 H 1.48508 * 109.46922 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99942 * 3 2 1 7 7 C 1.38941 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00539 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99460 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00349 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.46984 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99541 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00556 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99422 * 180.02562 * 14 13 12 17 17 S 1.81405 * 109.46778 * 179.97438 * 16 14 13 18 18 C 1.76207 * 102.99809 * 179.97438 * 17 16 14 19 19 N 1.31404 * 126.33906 * 359.96195 * 18 17 16 20 20 N 1.28661 * 110.29738 * 180.02562 * 19 18 17 21 21 C 1.32011 * 109.69166 * 359.97438 * 20 19 18 22 22 C 1.40956 * 133.51652 * 179.97438 * 21 20 19 23 23 C 1.35910 * 119.24290 * 180.25993 * 22 21 20 24 24 C 1.40748 * 119.86258 * 359.44259 * 23 22 21 25 25 C 1.34800 * 120.43833 * 0.60511 * 24 23 22 26 26 N 1.36357 * 126.33755 * 180.02562 * 18 17 16 27 27 H 0.97006 * 119.99928 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99472 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47294 * 60.00119 * 12 10 9 30 30 H 1.09001 * 109.47170 * 299.99892 * 12 10 9 31 31 H 0.97001 * 120.00117 * 359.97438 * 13 12 10 32 32 H 1.08999 * 109.47421 * 60.00310 * 16 14 13 33 33 H 1.08998 * 109.47368 * 299.99370 * 16 14 13 34 34 H 1.08002 * 120.37537 * 359.97438 * 22 21 20 35 35 H 1.08003 * 120.06925 * 179.72444 * 23 22 21 36 36 H 1.08005 * 119.78198 * 180.30438 * 24 23 22 37 37 H 1.07996 * 119.77335 * 179.69472 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2103 -3.5577 -0.0031 12 6 1.2438 -4.8629 -0.0032 13 7 2.1959 -5.9764 -0.0037 14 6 1.7466 -7.2471 -0.0048 15 8 0.5543 -7.4688 -0.0049 16 6 2.7260 -8.3924 -0.0047 17 16 1.8190 -9.9635 -0.0056 18 6 3.1077 -11.1651 -0.0062 19 7 4.3991 -10.9220 -0.0067 20 7 5.0610 -12.0253 -0.0076 21 6 4.2240 -13.0461 -0.0071 22 6 4.3991 -14.4448 -0.0080 23 6 3.3049 -15.2509 -0.0125 24 6 2.0167 -14.6839 -0.0042 25 6 1.8598 -13.3451 -0.0041 26 7 2.9496 -12.5195 -0.0074 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3906 -0.0024 29 1 0.6168 -4.9201 -0.8930 30 1 0.6175 -4.9212 0.8870 31 1 3.1496 -5.7991 -0.0040 32 1 3.3519 -8.3353 0.8857 33 1 3.3532 -8.3342 -0.8942 34 1 5.3915 -14.8709 -0.0099 35 1 3.4236 -16.3244 -0.0178 36 1 1.1480 -15.3257 -0.0028 37 1 0.8664 -12.9215 -0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341881554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:48 Heat of formation + Delta-G solvation = 42.284988 kcal Electronic energy + Delta-G solvation = -23929.315158 eV Core-core repulsion = 20028.074472 eV Total energy + Delta-G solvation = -3901.240686 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.77255 -39.73272 -38.58783 -38.18123 -34.59364 -34.41847 -33.79247 -31.74976 -31.45473 -30.68071 -29.79360 -27.25075 -24.71502 -24.48797 -24.00689 -23.07937 -20.65863 -19.72571 -19.12742 -18.16551 -17.97161 -17.27182 -17.00821 -16.93405 -16.23276 -15.85684 -15.68010 -15.50462 -15.31923 -14.53928 -14.44191 -14.10444 -13.99651 -13.32384 -13.17131 -13.15373 -12.92635 -12.61571 -12.27329 -12.01726 -11.98485 -11.86970 -11.66057 -11.40372 -11.12778 -10.68297 -10.52786 -10.35078 -10.26836 -10.10476 -9.66269 -9.22711 -8.99404 -8.69440 -8.14197 -7.73946 -6.54830 -3.97147 0.12948 0.47795 0.57341 1.66569 2.04876 2.20590 2.50890 2.85799 3.11864 3.15112 3.20439 3.25969 3.67209 3.68774 3.96062 4.08017 4.22093 4.33957 4.42362 4.62921 4.78048 4.79774 4.97230 5.00958 5.11507 5.13381 5.35983 5.47986 5.55687 5.79131 5.79567 5.86172 5.99184 6.29581 6.46553 7.42842 7.52899 7.87155 8.04300 8.14970 8.40626 9.00818 9.34474 9.82079 10.61743 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.043821 B = 0.001714 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.806475 B =16331.175265 C =16949.533362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.597 6.597 12 C 0.110 3.890 13 N -0.696 5.696 14 C 0.533 3.467 15 O -0.536 6.536 16 C -0.141 4.141 17 S 0.081 5.919 18 C 0.112 3.888 19 N -0.251 5.251 20 N -0.277 5.277 21 C 0.195 3.805 22 C -0.077 4.077 23 C -0.088 4.088 24 C -0.137 4.137 25 C 0.072 3.928 26 N -0.378 5.378 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.415 0.585 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -29.912 -0.015 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.211 3.789 11 O -0.483 6.483 12 C -0.018 4.018 13 N -0.350 5.350 14 C 0.316 3.684 15 O -0.414 6.414 16 C -0.293 4.293 17 S 0.308 5.692 18 C -0.257 4.257 19 N -0.095 5.095 20 N -0.123 5.123 21 C -0.057 4.057 22 C -0.098 4.098 23 C -0.113 4.113 24 C -0.159 4.159 25 C -0.050 4.050 26 N -0.060 5.060 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.254 0.746 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.176 0.824 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.743 -29.004 -0.018 29.014 hybrid contribution 0.480 0.430 -0.001 0.644 sum 1.223 -28.574 -0.019 28.600 Atomic orbital electron populations 1.69606 1.06018 1.28706 1.49032 1.25330 0.95675 0.99970 0.96646 0.85860 0.78780 0.80065 0.79196 1.19744 1.20828 1.19748 1.19692 0.93481 0.81965 1.48486 0.87661 1.41779 1.09494 1.04447 1.62394 1.19684 0.88302 0.84935 0.85963 1.90513 1.13636 1.86744 1.57440 1.21024 0.91689 0.85501 1.03591 1.45546 1.12133 1.04048 1.73270 1.19360 0.88471 0.83338 0.77225 1.90742 1.16002 1.84336 1.50295 1.23700 1.02417 0.93265 1.09906 1.85932 0.98322 0.92326 1.92606 1.27008 1.00103 0.85761 1.12857 1.74670 0.99046 1.19618 1.16175 1.74679 1.24030 0.93127 1.20472 1.22478 0.80378 0.96852 1.05942 1.20314 1.01463 0.86740 1.01317 1.21227 0.91325 1.01129 0.97572 1.20984 0.99318 0.92922 1.02639 1.21810 0.91027 0.90690 1.01489 1.43574 1.08572 1.05646 1.48253 0.91486 0.77003 0.89472 0.89475 0.74608 0.85362 0.85360 0.82393 0.83327 0.82387 0.81052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.52 13.05 55.50 0.72 -22.80 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.31 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.26 5.29 -10.97 -0.06 -13.32 16 10 C 0.43 9.47 7.85 -10.99 -0.09 9.39 16 11 O -0.60 -14.94 15.24 5.54 0.08 -14.85 16 12 C 0.11 1.91 6.15 -5.19 -0.03 1.88 16 13 N -0.70 -10.80 5.53 -61.47 -0.34 -11.14 16 14 C 0.53 7.72 7.85 -10.98 -0.09 7.63 16 15 O -0.54 -9.15 15.86 5.56 0.09 -9.06 16 16 C -0.14 -1.63 6.08 36.01 0.22 -1.41 16 17 S 0.08 0.93 21.25 -107.50 -2.28 -1.36 16 18 C 0.11 1.40 8.23 -88.41 -0.73 0.67 16 19 N -0.25 -3.65 11.80 30.67 0.36 -3.28 16 20 N -0.28 -3.95 12.28 31.23 0.38 -3.57 16 21 C 0.20 2.17 7.93 -155.73 -1.24 0.94 16 22 C -0.08 -0.52 10.11 -39.39 -0.40 -0.92 16 23 C -0.09 -0.35 10.06 -39.47 -0.40 -0.75 16 24 C -0.14 -0.54 9.98 -39.85 -0.40 -0.94 16 25 C 0.07 0.47 10.96 -16.59 -0.18 0.29 16 26 N -0.38 -3.97 2.98 -62.70 -0.19 -4.16 16 27 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.40 9.20 7.90 -40.82 -0.32 8.88 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.42 6.34 7.44 -40.82 -0.30 6.03 16 32 H 0.13 1.34 8.14 -51.92 -0.42 0.92 16 33 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.15 0.11 8.06 -52.48 -0.42 -0.31 16 36 H 0.16 0.10 8.06 -52.48 -0.42 -0.32 16 37 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -34.63 350.15 -8.06 -42.69 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.52 Total: 11.26 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -3.56 Total: 9.00 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.88 Total: -58.27 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.92 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.28 Total: -1.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.63 -8.06 -42.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341881554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.970 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds